Wall clock time and date at job start Sat Apr 11 2020 06:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46650 * 2 1 4 4 C 1.52995 * 109.47190 * 240.00075 * 2 1 3 5 5 N 1.46498 * 109.47613 * 64.99938 * 4 2 1 6 6 C 1.34772 * 120.00438 * 180.02562 * 5 4 2 7 7 O 1.21279 * 119.99722 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.00338 * 179.97438 * 6 5 4 9 9 S 1.80994 * 109.47359 * 179.97438 * 8 6 5 10 10 C 1.76192 * 100.00093 * 179.97438 * 9 8 6 11 11 H 1.07999 * 120.00142 * 359.97438 * 10 9 8 12 12 C 1.38796 * 120.00298 * 179.97438 * 10 9 8 13 13 N 1.31638 * 119.99740 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00297 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47177 * 90.00089 * 14 12 10 16 16 H 1.48505 * 109.47060 * 209.99932 * 14 12 10 17 17 H 1.48501 * 109.47017 * 330.00210 * 14 12 10 18 18 C 1.52999 * 109.47007 * 119.99491 * 2 1 3 19 19 N 1.46492 * 109.47623 * 295.00368 * 18 2 1 20 20 C 1.34778 * 120.00556 * 180.02562 * 19 18 2 21 21 O 1.21284 * 119.99600 * 359.97438 * 20 19 18 22 22 C 1.50697 * 120.00291 * 180.02562 * 20 19 18 23 23 C 1.50702 * 109.46965 * 179.97438 * 22 20 19 24 24 C 1.41385 * 128.00459 * 90.00055 * 23 22 20 25 25 N 1.30179 * 106.39389 * 179.97438 * 24 23 22 26 26 O 1.20927 * 111.60367 * 359.97438 * 25 24 23 27 27 C 1.34037 * 111.56699 * 359.97438 * 26 25 24 28 28 H 1.09004 * 109.46650 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47225 * 300.00001 * 1 2 3 30 30 H 1.08998 * 109.47131 * 60.00664 * 1 2 3 31 31 H 1.09009 * 109.47106 * 185.00090 * 4 2 1 32 32 H 1.09003 * 109.47102 * 304.99336 * 4 2 1 33 33 H 0.97003 * 119.99581 * 359.97438 * 5 4 2 34 34 H 1.09002 * 109.46542 * 300.00225 * 8 6 5 35 35 H 1.09001 * 109.46569 * 59.99644 * 8 6 5 36 36 H 0.97001 * 120.00015 * 179.97438 * 13 12 10 37 37 H 1.09005 * 109.46733 * 175.00270 * 18 2 1 38 38 H 1.08998 * 109.47143 * 55.00924 * 18 2 1 39 39 H 0.97010 * 119.99963 * 359.97438 * 19 18 2 40 40 H 1.08997 * 109.47662 * 59.99660 * 22 20 19 41 41 H 1.08998 * 109.46934 * 299.99061 * 22 20 19 42 42 H 1.07993 * 126.80227 * 359.70041 * 24 23 22 43 43 H 1.08002 * 126.77549 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6525 0.0353 -2.4424 6 6 1.9957 -0.4136 -3.6659 7 8 2.6257 -1.4437 -3.7792 8 6 1.5965 0.3643 -4.8934 9 16 2.2000 -0.4888 -6.3712 10 6 1.6093 0.6058 -7.6191 11 1 1.0560 1.4912 -7.3430 12 6 1.8551 0.3303 -8.9570 13 7 2.5292 -0.7492 -9.2936 14 14 1.2295 1.4912 -10.2800 15 1 2.2596 2.5235 -10.5602 16 1 0.9483 0.7233 -11.5197 17 1 -0.0166 2.1495 -9.8120 18 6 2.0400 -0.7211 1.2493 19 7 1.6524 0.0354 2.4424 20 6 1.9964 -0.4129 3.6660 21 8 2.6265 -1.4430 3.7793 22 6 1.5972 0.3651 4.8933 23 6 2.0996 -0.3452 6.1238 24 6 3.3416 -0.1791 6.7787 25 7 3.3353 -0.9972 7.7913 26 8 2.3019 -1.6223 7.8522 27 6 1.4652 -1.2891 6.8595 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 3.1264 -0.7994 -1.2055 32 1 1.6055 -1.7198 -1.2951 33 1 1.1483 0.8590 -2.3518 34 1 0.5102 0.4424 -4.9366 35 1 2.0311 1.3629 -4.8478 36 1 2.7006 -0.9420 -10.2287 37 1 3.1264 -0.7993 1.2056 38 1 1.6055 -1.7197 1.2952 39 1 1.1488 0.8596 2.3517 40 1 0.5108 0.4425 4.9370 41 1 2.0311 1.3639 4.8474 42 1 4.1393 0.4903 6.4928 43 1 0.4800 -1.6939 6.6809 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001532114519.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:30 Heat of formation + Delta-G solvation = -53.656337 kcal Electronic energy + Delta-G solvation = -25227.966734 eV Core-core repulsion = 21208.338533 eV Total energy + Delta-G solvation = -4019.628201 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.87516 -40.90502 -40.52586 -38.00947 -35.63818 -35.42227 -34.57335 -33.45671 -33.00199 -30.90002 -29.89556 -27.80383 -27.56225 -26.19096 -23.94501 -22.87267 -21.84532 -21.60676 -21.16567 -19.80975 -18.86513 -18.58912 -17.98663 -17.67028 -17.50982 -16.87253 -16.84835 -16.67945 -16.50729 -15.84379 -15.70251 -15.54109 -14.81011 -14.73954 -14.49199 -14.34462 -14.14467 -14.04983 -13.80378 -13.61162 -13.31698 -13.15383 -12.98468 -12.88001 -12.61036 -12.17213 -12.15431 -12.10473 -11.83701 -11.71403 -11.37937 -11.13274 -11.04534 -10.93494 -10.30910 -10.25676 -10.12698 -10.06569 -8.65883 -8.33629 -6.11874 0.61295 1.25719 1.29036 1.43573 1.48580 1.58425 1.62959 1.68469 2.13614 2.28513 2.40742 2.52869 3.00798 3.33549 3.39169 3.70781 3.80449 3.81746 3.87206 3.88899 4.03909 4.11685 4.28226 4.32180 4.43000 4.51904 4.53018 4.64543 4.77981 4.78704 4.79983 4.84074 4.91367 5.00703 5.15007 5.20879 5.35661 5.42884 5.46253 5.48524 6.20784 6.52255 6.60704 7.07803 7.26963 7.32163 7.32786 8.75577 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.048139 B = 0.001344 C = 0.001328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.514160 B =20828.663885 C =21085.964941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.094 4.094 3 H 0.109 0.891 4 C 0.124 3.876 5 N -0.707 5.707 6 C 0.532 3.468 7 O -0.569 6.569 8 C -0.128 4.128 9 S -0.157 6.157 10 C -0.546 4.546 11 H 0.085 0.915 12 C 0.013 3.987 13 N -0.912 5.912 14 Si 0.999 3.001 15 H -0.268 1.268 16 H -0.279 1.279 17 H -0.256 1.256 18 C 0.129 3.871 19 N -0.711 5.711 20 C 0.508 3.492 21 O -0.589 6.589 22 C -0.052 4.052 23 C -0.199 4.199 24 C -0.008 4.008 25 N -0.406 5.406 26 O 0.078 5.922 27 C -0.040 4.040 28 H 0.049 0.951 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.418 0.582 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.271 0.729 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.420 0.580 40 H 0.147 0.853 41 H 0.138 0.862 42 H 0.202 0.798 43 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.894 10.269 32.333 35.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.113 4.113 3 H 0.127 0.873 4 C 0.000 4.000 5 N -0.362 5.362 6 C 0.317 3.683 7 O -0.447 6.447 8 C -0.280 4.280 9 S 0.070 5.930 10 C -0.693 4.693 11 H 0.103 0.897 12 C -0.191 4.191 13 N -0.549 5.549 14 Si 0.820 3.180 15 H -0.193 1.193 16 H -0.205 1.205 17 H -0.180 1.180 18 C 0.004 3.996 19 N -0.364 5.364 20 C 0.296 3.704 21 O -0.468 6.468 22 C -0.092 4.092 23 C -0.204 4.204 24 C -0.186 4.186 25 N -0.113 5.113 26 O 0.017 5.983 27 C -0.122 4.122 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.256 0.744 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.259 0.741 40 H 0.165 0.835 41 H 0.156 0.844 42 H 0.219 0.781 43 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -7.474 7.429 33.101 34.738 hybrid contribution -1.219 2.079 -1.706 2.953 sum -8.694 9.508 31.394 33.935 Atomic orbital electron populations 1.21919 0.92677 1.02593 1.03527 1.21422 0.97886 1.00992 0.90991 0.87291 1.21301 0.99712 0.95380 0.83629 1.45641 1.58082 1.28411 1.04050 1.20097 0.78452 0.84702 0.85007 1.90706 1.40971 1.26097 1.86971 1.23367 1.05825 1.03346 0.95427 1.85641 1.74291 1.36032 0.96999 1.23213 1.41425 1.11454 0.93250 0.89727 1.26132 0.94815 0.97516 1.00684 1.70193 1.39058 1.26838 1.18799 0.84951 0.78997 0.77543 0.76470 1.19350 1.20460 1.18017 1.21107 0.99499 0.95268 0.83677 1.45776 1.57756 1.28283 1.04626 1.21179 0.78436 0.85224 0.85562 1.90764 1.41732 1.26986 1.87353 1.19996 1.05443 0.99159 0.84615 1.21093 0.95114 1.03014 1.01136 1.25395 1.00082 1.00287 0.92857 1.73870 1.04746 1.09639 1.23043 1.84769 1.19757 1.50030 1.43764 1.26575 0.99587 0.97212 0.88785 0.93227 0.89695 0.91591 0.92572 0.92561 0.74409 0.86990 0.87011 0.92049 0.92673 0.92336 0.74115 0.83501 0.84424 0.78070 0.73250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 8.94 71.98 0.64 -0.33 16 2 C -0.09 -0.84 2.46 -10.79 -0.03 -0.87 16 3 H 0.11 0.55 8.14 -2.38 -0.02 0.53 16 4 C 0.12 2.35 5.06 86.38 0.44 2.79 16 5 N -0.71 -15.27 5.28 -463.06 -2.45 -17.72 16 6 C 0.53 18.57 7.85 87.66 0.69 19.26 16 7 O -0.57 -25.99 15.86 -3.03 -0.05 -26.04 16 8 C -0.13 -4.82 6.16 71.24 0.44 -4.39 16 9 S -0.16 -8.58 20.57 -56.49 -1.16 -9.75 16 10 C -0.55 -30.61 9.50 67.95 0.65 -29.96 16 11 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 12 C 0.01 0.74 5.49 84.86 0.47 1.21 16 13 N -0.91 -55.75 13.22 21.65 0.29 -55.46 16 14 Si 1.00 42.82 29.55 68.60 2.03 44.85 16 15 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 16 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 17 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 18 C 0.13 1.52 5.06 86.38 0.44 1.96 16 19 N -0.71 -4.52 5.28 -463.07 -2.45 -6.97 16 20 C 0.51 5.69 7.82 87.66 0.69 6.38 16 21 O -0.59 -13.77 16.03 -3.04 -0.05 -13.82 16 22 C -0.05 -0.15 6.28 29.10 0.18 0.04 16 23 C -0.20 -2.07 4.82 -19.73 -0.10 -2.17 16 24 C -0.01 -0.12 12.16 85.71 1.04 0.93 16 25 N -0.41 -8.22 12.07 -59.25 -0.72 -8.93 16 26 O 0.08 1.34 11.20 71.65 0.80 2.14 16 27 C -0.04 -0.40 12.26 67.17 0.82 0.43 16 28 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 29 H 0.08 0.11 7.18 -2.39 -0.02 0.09 16 30 H 0.07 0.43 7.18 -2.39 -0.02 0.42 16 31 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.42 5.69 7.65 -92.71 -0.71 4.98 16 34 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 35 H 0.11 3.71 8.14 -2.40 -0.02 3.69 16 36 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 37 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.42 -0.57 7.66 -92.70 -0.71 -1.28 16 40 H 0.15 -0.65 8.14 -2.39 -0.02 -0.67 16 41 H 0.14 -0.33 8.14 -2.39 -0.02 -0.35 16 42 H 0.20 2.08 8.06 -2.91 -0.02 2.06 16 43 H 0.25 0.16 8.06 -2.91 -0.02 0.13 16 Total: -1.00 -92.66 387.60 2.25 -90.41 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -0.37 Total: 6.01 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: 6.37 Total: -4.72 kcal Atomic # 7 Polarization: -83.76 SS G_CDS: -5.32 Total: -89.09 kcal Atomic # 8 Polarization: -38.42 SS G_CDS: 0.71 Total: -37.72 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.75 kcal Total: -92.66 2.25 -90.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001532114519.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.756 kcal (2) G-P(sol) polarization free energy of solvation -92.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds