Wall clock time and date at job start Sat Apr 11 2020 06:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47338 * 2 1 4 4 N 1.46500 * 109.46926 * 240.00016 * 2 1 3 5 5 C 1.34780 * 119.99762 * 85.00118 * 4 2 1 6 6 O 1.21509 * 120.00225 * 0.02562 * 5 4 2 7 7 O 1.34640 * 120.00058 * 179.97438 * 5 4 2 8 8 C 1.45200 * 116.99990 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.46901 * 60.00575 * 8 7 5 10 10 C 1.53005 * 109.46961 * 179.97438 * 8 7 5 11 11 C 1.52995 * 109.47498 * 300.00417 * 8 7 5 12 12 C 1.50695 * 109.47130 * 120.00529 * 2 1 3 13 13 N 1.28653 * 124.71072 * 255.28224 * 12 2 1 14 14 C 1.33572 * 115.76927 * 180.15433 * 13 12 2 15 15 C 1.47176 * 123.14845 * 179.82810 * 14 13 12 16 16 O 1.21668 * 119.99598 * 179.72754 * 15 14 13 17 17 N 1.34777 * 120.00228 * 359.73172 * 15 14 13 18 18 C 1.36955 * 119.99887 * 179.97438 * 17 15 14 19 19 H 1.07995 * 120.00044 * 359.72777 * 18 17 15 20 20 C 1.38978 * 119.99882 * 179.97438 * 18 17 15 21 21 N 1.31411 * 119.99963 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00096 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46812 * 90.00254 * 22 20 18 24 24 H 1.48494 * 109.47357 * 210.00329 * 22 20 18 25 25 H 1.48494 * 109.47227 * 330.00847 * 22 20 18 26 26 C 1.35291 * 113.69637 * 359.55931 * 14 13 12 27 27 S 1.70767 * 124.71648 * 74.97347 * 12 2 1 28 28 H 1.08998 * 109.47474 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47169 * 300.00032 * 1 2 3 30 30 H 1.09000 * 109.47294 * 59.99807 * 1 2 3 31 31 H 0.96997 * 120.00331 * 264.99928 * 4 2 1 32 32 H 1.09005 * 109.47488 * 59.99407 * 9 8 7 33 33 H 1.08998 * 109.47480 * 179.97438 * 9 8 7 34 34 H 1.08998 * 109.47157 * 299.99917 * 9 8 7 35 35 H 1.09003 * 109.46781 * 60.00123 * 10 8 7 36 36 H 1.09000 * 109.47065 * 179.97438 * 10 8 7 37 37 H 1.08993 * 109.47315 * 300.00711 * 10 8 7 38 38 H 1.08998 * 109.46856 * 59.99902 * 11 8 7 39 39 H 1.09000 * 109.47458 * 180.02562 * 11 8 7 40 40 H 1.09003 * 109.46801 * 300.00218 * 11 8 7 41 41 H 0.96999 * 120.00047 * 359.97438 * 17 15 14 42 42 H 0.97005 * 120.00019 * 179.97438 * 21 20 18 43 43 H 1.08001 * 125.59140 * 180.21552 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8585 1.1609 -2.4116 7 8 2.5962 -0.6527 -3.4564 8 6 2.7090 0.1338 -4.6717 9 6 3.6803 1.2931 -4.4405 10 6 3.2324 -0.7509 -5.8050 11 6 1.3341 0.6881 -5.0500 12 6 2.0323 -0.7105 1.2304 13 7 2.5298 -0.1253 2.2624 14 6 2.9229 -0.9303 3.2532 15 6 3.5172 -0.4346 4.5051 16 8 3.8507 -1.2197 5.3727 17 7 3.6918 0.8889 4.6905 18 6 4.2444 1.3501 5.8557 19 1 4.5360 0.6535 6.6277 20 6 4.4250 2.7148 6.0466 21 7 4.0651 3.5626 5.1093 22 14 5.1780 3.3439 7.6361 23 1 6.6535 3.4214 7.4881 24 1 4.6392 4.6942 7.9386 25 1 4.8399 2.4162 8.7452 26 6 2.7182 -2.2435 3.0005 27 16 2.0134 -2.4037 1.4515 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 2.2490 -1.6317 -1.1527 32 1 4.6599 0.8982 -4.1709 33 1 3.7654 1.8833 -5.3529 34 1 3.3080 1.9235 -3.6330 35 1 2.5407 -1.5772 -5.9698 36 1 3.3166 -0.1606 -6.7175 37 1 4.2119 -1.1455 -5.5352 38 1 0.9618 1.3185 -4.2425 39 1 1.4188 1.2782 -5.9626 40 1 0.6422 -0.1378 -5.2147 41 1 3.4262 1.5147 3.9986 42 1 4.1909 4.5152 5.2427 43 1 2.9607 -3.0573 3.6679 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001546236640.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:45 Heat of formation + Delta-G solvation = -79.931675 kcal Electronic energy + Delta-G solvation = -27052.155927 eV Core-core repulsion = 23031.388342 eV Total energy + Delta-G solvation = -4020.767585 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.00573 -39.87793 -38.10331 -37.36129 -35.55010 -34.30808 -34.08439 -31.40852 -31.26343 -29.32077 -27.68019 -27.60409 -26.25809 -25.11785 -23.60693 -22.15015 -21.06528 -20.17280 -19.16021 -18.50024 -18.08662 -17.76155 -16.75514 -16.34548 -15.69042 -15.58696 -15.20102 -14.87800 -14.72884 -14.53499 -14.28923 -13.88642 -13.76043 -13.48893 -13.20050 -12.81524 -12.73191 -12.70533 -12.41691 -12.21771 -12.17316 -12.13151 -11.85643 -11.76076 -11.58356 -11.53102 -11.46643 -11.16473 -10.59137 -10.46447 -10.34007 -10.23440 -9.65648 -9.63629 -9.56871 -9.39057 -8.67857 -8.60670 -8.09287 -6.57357 -3.90799 0.75225 1.37898 1.81691 1.89799 2.53897 2.67339 3.17141 3.20604 3.26716 3.80789 4.00439 4.08956 4.28179 4.45228 4.49890 4.64233 4.86807 4.98190 5.12864 5.19602 5.24570 5.26105 5.28010 5.31600 5.42445 5.49551 5.53902 5.61603 5.66382 5.72201 5.72624 5.90710 5.98408 6.00494 6.06233 6.18432 6.31068 6.52648 7.15729 7.40074 7.71954 7.94637 8.17888 8.49556 9.01648 9.42008 9.95601 10.58175 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013975 B = 0.002595 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.043956 B =10786.063159 C =12003.223521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.243 3.757 3 H 0.124 0.876 4 N -0.707 5.707 5 C 0.656 3.344 6 O -0.560 6.560 7 O -0.364 6.364 8 C 0.136 3.864 9 C -0.186 4.186 10 C -0.141 4.141 11 C -0.184 4.184 12 C 0.004 3.996 13 N -0.422 5.422 14 C 0.053 3.947 15 C 0.487 3.513 16 O -0.598 6.598 17 N -0.521 5.521 18 C -0.297 4.297 19 H 0.109 0.891 20 C 0.026 3.974 21 N -0.878 5.878 22 Si 0.937 3.063 23 H -0.275 1.275 24 H -0.281 1.281 25 H -0.266 1.266 26 C -0.240 4.240 27 S 0.165 5.835 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.404 0.596 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.404 0.596 42 H 0.277 0.723 43 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.425 -8.354 -21.726 24.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.136 3.864 3 H 0.142 0.858 4 N -0.367 5.367 5 C 0.410 3.590 6 O -0.448 6.448 7 O -0.279 6.279 8 C 0.100 3.900 9 C -0.243 4.243 10 C -0.198 4.198 11 C -0.241 4.241 12 C -0.277 4.277 13 N -0.138 5.138 14 C -0.081 4.081 15 C 0.271 3.729 16 O -0.485 6.485 17 N -0.153 5.153 18 C -0.428 4.428 19 H 0.127 0.873 20 C -0.179 4.179 21 N -0.516 5.516 22 Si 0.763 3.237 23 H -0.201 1.201 24 H -0.206 1.206 25 H -0.191 1.191 26 C -0.382 4.382 27 S 0.419 5.581 28 H 0.081 0.919 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.239 0.761 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.239 0.761 42 H 0.087 0.913 43 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -6.585 -8.228 -21.831 24.241 hybrid contribution 0.778 0.643 1.199 1.568 sum -5.808 -7.585 -20.631 22.736 Atomic orbital electron populations 1.22240 0.92635 1.02999 1.03998 1.19170 0.94298 0.96652 0.76297 0.85824 1.44845 1.70468 1.14180 1.07253 1.17915 0.76548 0.83674 0.80896 1.90928 1.54748 1.14466 1.84700 1.86300 1.79339 1.43897 1.18372 1.22091 0.96524 0.90916 0.80507 1.22537 0.98997 0.98451 1.04296 1.21864 1.02074 0.99939 0.95907 1.22520 0.95692 1.02219 1.03643 1.26844 1.05948 0.95170 0.99696 1.66919 1.09760 1.37268 0.99818 1.21009 1.02196 0.88934 0.95987 1.16541 0.87335 0.83597 0.85391 1.90636 1.58238 1.55661 1.43978 1.41878 1.50363 1.05293 1.17758 1.19897 1.36176 0.91730 0.94973 0.87281 1.25463 0.97218 0.95709 0.99517 1.69658 1.44810 1.03646 1.33514 0.85752 0.79057 0.78106 0.80813 1.20051 1.20609 1.19071 1.26362 1.08560 1.01807 1.01483 1.82295 1.56241 1.07753 1.11793 0.91858 0.90141 0.90651 0.76067 0.92062 0.91117 0.89157 0.91488 0.90125 0.91406 0.89231 0.91133 0.92192 0.76083 0.91267 0.79641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 9.47 37.16 0.35 -1.33 16 2 C 0.24 3.08 3.08 -69.09 -0.21 2.86 16 3 H 0.12 1.82 7.58 -51.93 -0.39 1.43 16 4 N -0.71 -7.91 5.06 -59.87 -0.30 -8.22 16 5 C 0.66 8.15 8.02 54.06 0.43 8.58 16 6 O -0.56 -8.07 11.54 -19.28 -0.22 -8.30 16 7 O -0.36 -4.03 9.94 -40.33 -0.40 -4.43 16 8 C 0.14 1.25 1.13 -90.62 -0.10 1.15 16 9 C -0.19 -1.78 8.37 37.16 0.31 -1.47 16 10 C -0.14 -0.91 8.85 37.16 0.33 -0.58 16 11 C -0.18 -1.58 8.37 37.16 0.31 -1.27 16 12 C 0.00 0.06 6.26 -13.61 -0.09 -0.03 16 13 N -0.42 -8.11 10.12 -8.52 -0.09 -8.19 16 14 C 0.05 1.10 6.70 -84.53 -0.57 0.54 16 15 C 0.49 12.57 7.75 -12.63 -0.10 12.47 16 16 O -0.60 -16.90 16.29 5.22 0.08 -16.81 16 17 N -0.52 -14.13 5.28 -12.02 -0.06 -14.19 16 18 C -0.30 -8.41 9.68 -14.99 -0.15 -8.55 16 19 H 0.11 3.16 7.15 -52.49 -0.38 2.79 16 20 C 0.03 0.69 5.50 -17.46 -0.10 0.60 16 21 N -0.88 -24.04 13.05 55.50 0.72 -23.32 16 22 Si 0.94 20.71 29.55 -169.99 -5.02 15.69 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 25 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 26 C -0.24 -4.08 10.62 29.68 0.32 -3.76 16 27 S 0.16 2.01 21.99 -107.50 -2.36 -0.35 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.40 3.79 7.88 -40.82 -0.32 3.47 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 1.10 5.88 -51.93 -0.31 0.80 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.09 0.98 5.88 -51.93 -0.31 0.67 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.40 10.87 7.41 -40.82 -0.30 10.56 16 42 H 0.28 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.19 2.99 8.03 -52.49 -0.42 2.57 16 LS Contribution 377.48 15.07 5.69 5.69 Total: -1.00 -32.56 377.48 -7.01 -39.57 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -5.79 Total: 13.65 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: 0.75 Total: 9.20 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: 0.27 Total: -53.92 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -0.54 Total: -29.54 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -2.36 Total: -0.35 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.56 -7.01 -39.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001546236640.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.361 kcal (2) G-P(sol) polarization free energy of solvation -32.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds