Wall clock time and date at job start Sat Apr 11 2020 06:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47338 * 2 1 4 4 N 1.46500 * 109.46926 * 240.00016 * 2 1 3 5 5 C 1.34780 * 119.99762 * 85.00118 * 4 2 1 6 6 O 1.21509 * 120.00225 * 0.02562 * 5 4 2 7 7 O 1.34640 * 120.00058 * 179.97438 * 5 4 2 8 8 C 1.45200 * 116.99990 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.46901 * 60.00575 * 8 7 5 10 10 C 1.53005 * 109.46961 * 179.97438 * 8 7 5 11 11 C 1.52995 * 109.47498 * 300.00417 * 8 7 5 12 12 C 1.50695 * 109.47130 * 120.00529 * 2 1 3 13 13 N 1.28653 * 124.71072 * 255.28224 * 12 2 1 14 14 C 1.33572 * 115.76927 * 180.15433 * 13 12 2 15 15 C 1.47176 * 123.14845 * 179.82810 * 14 13 12 16 16 O 1.21668 * 119.99598 * 179.72754 * 15 14 13 17 17 N 1.34777 * 120.00228 * 359.73172 * 15 14 13 18 18 C 1.36955 * 119.99887 * 179.97438 * 17 15 14 19 19 H 1.07995 * 120.00044 * 359.72777 * 18 17 15 20 20 C 1.38978 * 119.99882 * 179.97438 * 18 17 15 21 21 N 1.31411 * 119.99963 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00096 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46812 * 90.00254 * 22 20 18 24 24 H 1.48494 * 109.47357 * 210.00329 * 22 20 18 25 25 H 1.48494 * 109.47227 * 330.00847 * 22 20 18 26 26 C 1.35291 * 113.69637 * 359.55931 * 14 13 12 27 27 S 1.70767 * 124.71648 * 74.97347 * 12 2 1 28 28 H 1.08998 * 109.47474 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47169 * 300.00032 * 1 2 3 30 30 H 1.09000 * 109.47294 * 59.99807 * 1 2 3 31 31 H 0.96997 * 120.00331 * 264.99928 * 4 2 1 32 32 H 1.09005 * 109.47488 * 59.99407 * 9 8 7 33 33 H 1.08998 * 109.47480 * 179.97438 * 9 8 7 34 34 H 1.08998 * 109.47157 * 299.99917 * 9 8 7 35 35 H 1.09003 * 109.46781 * 60.00123 * 10 8 7 36 36 H 1.09000 * 109.47065 * 179.97438 * 10 8 7 37 37 H 1.08993 * 109.47315 * 300.00711 * 10 8 7 38 38 H 1.08998 * 109.46856 * 59.99902 * 11 8 7 39 39 H 1.09000 * 109.47458 * 180.02562 * 11 8 7 40 40 H 1.09003 * 109.46801 * 300.00218 * 11 8 7 41 41 H 0.96999 * 120.00047 * 359.97438 * 17 15 14 42 42 H 0.97005 * 120.00019 * 179.97438 * 21 20 18 43 43 H 1.08001 * 125.59140 * 180.21552 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8585 1.1609 -2.4116 7 8 2.5962 -0.6527 -3.4564 8 6 2.7090 0.1338 -4.6717 9 6 3.6803 1.2931 -4.4405 10 6 3.2324 -0.7509 -5.8050 11 6 1.3341 0.6881 -5.0500 12 6 2.0323 -0.7105 1.2304 13 7 2.5298 -0.1253 2.2624 14 6 2.9229 -0.9303 3.2532 15 6 3.5172 -0.4346 4.5051 16 8 3.8507 -1.2197 5.3727 17 7 3.6918 0.8889 4.6905 18 6 4.2444 1.3501 5.8557 19 1 4.5360 0.6535 6.6277 20 6 4.4250 2.7148 6.0466 21 7 4.0651 3.5626 5.1093 22 14 5.1780 3.3439 7.6361 23 1 6.6535 3.4214 7.4881 24 1 4.6392 4.6942 7.9386 25 1 4.8399 2.4162 8.7452 26 6 2.7182 -2.2435 3.0005 27 16 2.0134 -2.4037 1.4515 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 2.2490 -1.6317 -1.1527 32 1 4.6599 0.8982 -4.1709 33 1 3.7654 1.8833 -5.3529 34 1 3.3080 1.9235 -3.6330 35 1 2.5407 -1.5772 -5.9698 36 1 3.3166 -0.1606 -6.7175 37 1 4.2119 -1.1455 -5.5352 38 1 0.9618 1.3185 -4.2425 39 1 1.4188 1.2782 -5.9626 40 1 0.6422 -0.1378 -5.2147 41 1 3.4262 1.5147 3.9986 42 1 4.1909 4.5152 5.2427 43 1 2.9607 -3.0573 3.6679 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001546236640.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:44 Heat of formation + Delta-G solvation = -104.649785 kcal Electronic energy + Delta-G solvation = -27053.227785 eV Core-core repulsion = 23031.388342 eV Total energy + Delta-G solvation = -4021.839443 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.93833 -41.35501 -39.58752 -38.66695 -36.61746 -36.14023 -35.07653 -33.40463 -32.43007 -30.56717 -28.32478 -28.25012 -27.99813 -26.49621 -24.97768 -23.36335 -22.22027 -21.26417 -20.62821 -20.06487 -19.58875 -19.17419 -17.67803 -17.25581 -17.19000 -17.01412 -16.56772 -16.21032 -16.13737 -15.74989 -15.43478 -15.34798 -15.02767 -14.67734 -14.49104 -14.22887 -14.04469 -13.64394 -13.31055 -13.20808 -13.10543 -12.98618 -12.95759 -12.88120 -12.83309 -12.62280 -12.51331 -12.40019 -12.29923 -12.13415 -11.63248 -11.37253 -11.14277 -10.92769 -10.76895 -10.71033 -10.46545 -10.19297 -9.89617 -8.58846 -6.06321 -0.55520 0.17384 0.49912 0.80241 1.14456 1.38723 1.45179 1.53969 1.70276 2.23864 2.39303 2.69339 3.07300 3.19889 3.21237 3.74684 3.78723 3.83416 3.98375 4.02019 4.12723 4.27805 4.33469 4.51666 4.62566 4.66102 4.72560 4.80965 4.81132 4.85907 4.90736 4.92621 5.06055 5.14964 5.21883 5.29392 5.32708 5.37811 5.53691 5.84240 6.23713 6.32672 6.54212 6.95051 7.25236 7.38466 7.91378 8.57926 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013975 B = 0.002595 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.043956 B =10786.063159 C =12003.223521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.247 3.753 3 H 0.097 0.903 4 N -0.698 5.698 5 C 0.655 3.345 6 O -0.583 6.583 7 O -0.364 6.364 8 C 0.125 3.875 9 C -0.184 4.184 10 C -0.135 4.135 11 C -0.179 4.179 12 C -0.011 4.011 13 N -0.461 5.461 14 C 0.012 3.988 15 C 0.487 3.513 16 O -0.631 6.631 17 N -0.537 5.537 18 C -0.341 4.341 19 H 0.090 0.910 20 C -0.011 4.011 21 N -0.909 5.909 22 Si 1.006 2.994 23 H -0.266 1.266 24 H -0.267 1.267 25 H -0.266 1.266 26 C -0.241 4.241 27 S 0.319 5.681 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.414 0.586 32 H 0.058 0.942 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.401 0.599 42 H 0.283 0.717 43 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.218 -10.290 -24.115 27.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.140 3.860 3 H 0.115 0.885 4 N -0.360 5.360 5 C 0.408 3.592 6 O -0.473 6.473 7 O -0.278 6.278 8 C 0.089 3.911 9 C -0.241 4.241 10 C -0.192 4.192 11 C -0.237 4.237 12 C -0.290 4.290 13 N -0.178 5.178 14 C -0.122 4.122 15 C 0.274 3.726 16 O -0.520 6.520 17 N -0.170 5.170 18 C -0.471 4.471 19 H 0.108 0.892 20 C -0.213 4.213 21 N -0.547 5.547 22 Si 0.827 3.173 23 H -0.192 1.192 24 H -0.191 1.191 25 H -0.191 1.191 26 C -0.384 4.384 27 S 0.576 5.424 28 H 0.106 0.894 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.252 0.748 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.120 0.880 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.108 0.892 40 H 0.086 0.914 41 H 0.236 0.764 42 H 0.093 0.907 43 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -7.392 -10.195 -24.275 27.347 hybrid contribution 0.935 1.009 1.686 2.176 sum -6.457 -9.185 -22.589 25.226 Atomic orbital electron populations 1.22208 0.90605 1.04514 1.03897 1.19072 0.95611 0.95336 0.76026 0.88486 1.44667 1.70335 1.14470 1.06521 1.18034 0.76342 0.83415 0.81383 1.90934 1.55635 1.15620 1.85123 1.86316 1.78920 1.44096 1.18499 1.22451 0.96813 0.91364 0.80470 1.22512 0.98815 0.98584 1.04225 1.21889 1.02022 0.99980 0.95339 1.22472 0.95428 1.02277 1.03477 1.27202 1.04793 0.97847 0.99144 1.66824 1.11653 1.38596 1.00715 1.20355 1.05838 0.90538 0.95492 1.17291 0.85746 0.82911 0.86694 1.90575 1.59260 1.56319 1.45873 1.41908 1.51602 1.05855 1.17624 1.19911 1.39041 0.92449 0.95673 0.89181 1.26363 0.96928 0.95137 1.02882 1.69735 1.45688 1.04073 1.35241 0.84755 0.78407 0.77743 0.76365 1.19160 1.19120 1.19067 1.26809 1.06424 1.00623 1.04588 1.81742 1.51540 1.03062 1.06083 0.89445 0.90695 0.90379 0.74820 0.92321 0.89002 0.92170 0.90693 0.88000 0.91407 0.91885 0.89197 0.91355 0.76435 0.90704 0.78861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.47 71.98 0.68 -2.27 16 2 C 0.25 6.02 3.08 44.24 0.14 6.16 16 3 H 0.10 2.95 7.58 -2.39 -0.02 2.93 16 4 N -0.70 -14.38 5.06 -573.73 -2.91 -17.28 16 5 C 0.65 15.65 8.02 129.79 1.04 16.69 16 6 O -0.58 -16.98 11.54 19.81 0.23 -16.75 16 7 O -0.36 -7.45 9.94 -55.50 -0.55 -8.00 16 8 C 0.13 2.08 1.13 -10.79 -0.01 2.06 16 9 C -0.18 -3.39 8.37 71.98 0.60 -2.79 16 10 C -0.14 -1.36 8.85 71.98 0.64 -0.72 16 11 C -0.18 -2.80 8.37 71.98 0.60 -2.20 16 12 C -0.01 -0.30 6.26 88.57 0.55 0.25 16 13 N -0.46 -17.97 10.12 -180.85 -1.83 -19.80 16 14 C 0.01 0.52 6.70 40.55 0.27 0.79 16 15 C 0.49 26.37 7.75 86.59 0.67 27.05 16 16 O -0.63 -37.21 16.29 -4.25 -0.07 -37.28 16 17 N -0.54 -30.91 5.28 -310.18 -1.64 -32.55 16 18 C -0.34 -20.36 9.68 84.07 0.81 -19.55 16 19 H 0.09 5.56 7.15 -2.91 -0.02 5.54 16 20 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 21 N -0.91 -51.49 13.05 21.67 0.28 -51.20 16 22 Si 1.01 43.47 29.55 68.60 2.03 45.50 16 23 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 24 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 25 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 26 C -0.24 -7.80 10.62 67.14 0.71 -7.09 16 27 S 0.32 6.59 21.99 -56.49 -1.24 5.35 16 28 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.41 6.45 7.88 -92.71 -0.73 5.72 16 32 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.06 1.50 5.88 -2.39 -0.01 1.48 16 35 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.06 1.35 5.88 -2.39 -0.01 1.34 16 39 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.40 23.00 7.41 -92.71 -0.69 22.31 16 42 H 0.28 14.79 8.31 -92.70 -0.77 14.02 16 43 H 0.19 5.88 8.03 -2.91 -0.02 5.86 16 Total: -1.00 -76.55 377.48 1.13 -75.42 By element: Atomic # 1 Polarization: 38.73 SS G_CDS: -0.35 Total: 38.37 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: 7.18 Total: 18.23 kcal Atomic # 7 Polarization: -114.74 SS G_CDS: -6.09 Total: -120.83 kcal Atomic # 8 Polarization: -61.64 SS G_CDS: -0.39 Total: -62.03 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: 6.59 SS G_CDS: -1.24 Total: 5.35 kcal Total: -76.55 1.13 -75.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001546236640.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.232 kcal (2) G-P(sol) polarization free energy of solvation -76.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds