Wall clock time and date at job start Sat Apr 11 2020 06:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21292 * 120.00119 * 2 1 4 4 N 1.34784 * 119.99423 * 179.97438 * 2 1 3 5 5 C 1.40129 * 119.99378 * 184.27685 * 4 2 1 6 6 C 1.39112 * 119.91868 * 213.86573 * 5 4 2 7 7 C 1.37992 * 120.32685 * 180.02562 * 6 5 4 8 8 C 1.38695 * 120.16493 * 0.02562 * 7 6 5 9 9 O 1.35727 * 120.07888 * 179.97438 * 8 7 6 10 10 C 1.40124 * 119.84218 * 359.97438 * 8 7 6 11 11 C 1.47494 * 120.16677 * 180.02562 * 10 8 7 12 12 O 1.21588 * 119.99795 * 359.97438 * 11 10 8 13 13 N 1.34777 * 120.00282 * 179.97438 * 11 10 8 14 14 C 1.39175 * 119.99762 * 185.69125 * 13 11 10 15 15 C 1.39692 * 119.57907 * 18.00030 * 14 13 11 16 16 C 1.38650 * 119.49509 * 180.02562 * 15 14 13 17 17 C 1.38353 * 118.66842 * 0.02562 * 16 15 14 18 18 C 1.40569 * 119.13578 * 359.97438 * 17 16 15 19 19 C 1.41340 * 119.78830 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99431 * 5.39936 * 19 18 17 21 21 C 1.40021 * 120.00257 * 185.41040 * 19 18 17 22 22 N 1.30746 * 119.99963 * 210.48335 * 21 19 18 23 23 Si 1.86800 * 120.00137 * 30.47977 * 21 19 18 24 24 H 1.48494 * 109.47429 * 270.00429 * 23 21 19 25 25 H 1.48501 * 109.47187 * 30.00318 * 23 21 19 26 26 H 1.48502 * 109.47097 * 150.00247 * 23 21 19 27 27 N 1.31920 * 119.57473 * 198.26182 * 14 13 11 28 28 C 1.38386 * 119.92433 * 34.14678 * 5 4 2 29 29 H 1.09002 * 109.47291 * 270.00151 * 1 2 3 30 30 H 1.09010 * 109.46883 * 30.00106 * 1 2 3 31 31 H 1.09004 * 109.47307 * 149.99906 * 1 2 3 32 32 H 0.97000 * 120.00445 * 4.27407 * 4 2 1 33 33 H 1.08003 * 119.83876 * 359.97438 * 6 5 4 34 34 H 1.08005 * 119.91968 * 180.02562 * 7 6 5 35 35 H 0.96692 * 114.00280 * 270.02821 * 9 8 7 36 36 H 0.96998 * 119.99994 * 5.69073 * 13 11 10 37 37 H 1.08006 * 120.25410 * 359.97438 * 15 14 13 38 38 H 1.08000 * 120.66503 * 179.97438 * 16 15 14 39 39 H 1.07999 * 120.42873 * 180.02562 * 17 16 15 40 40 H 0.96993 * 119.99681 * 354.99005 * 22 21 19 41 41 H 1.07994 * 120.08210 * 0.02562 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.5792 -1.1690 0.0910 6 6 4.3162 -2.1455 -0.5711 7 6 5.6935 -2.1554 -0.4873 8 6 6.3533 -1.1905 0.2593 9 8 7.7080 -1.2022 0.3409 10 6 5.6178 -0.2036 0.9290 11 6 6.3121 0.8263 1.7245 12 8 7.5256 0.8200 1.8007 13 7 5.6015 1.7744 2.3669 14 6 6.2581 2.8139 3.0189 15 6 7.5900 3.0934 2.7039 16 6 8.2426 4.1291 3.3549 17 6 7.5486 4.8585 4.3038 18 6 6.2097 4.5283 4.5762 19 6 5.4879 5.2640 5.5434 20 1 5.9354 6.1307 6.0072 21 6 4.1928 4.8692 5.9003 22 7 3.3178 5.7637 6.2795 23 14 3.7150 3.0645 5.8347 24 1 3.1743 2.7441 4.4893 25 1 4.9114 2.2258 6.0999 26 1 2.6795 2.7889 6.8629 27 7 5.6162 3.5195 3.9302 28 6 4.2234 -0.2026 0.8435 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 0.8901 -0.5139 31 1 -0.3634 -0.8900 -0.5139 32 1 1.6978 -2.0062 -0.0617 33 1 3.8078 -2.9002 -1.1529 34 1 6.2592 -2.9164 -1.0043 35 1 8.0532 -1.7251 1.0773 36 1 4.6324 1.7321 2.3749 37 1 8.1078 2.5066 1.9595 38 1 9.2723 4.3613 3.1264 39 1 8.0291 5.6715 4.8277 40 1 3.5854 6.6901 6.3835 41 1 3.6498 0.5519 1.3611 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001558101411.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:48 Heat of formation + Delta-G solvation = -48.211733 kcal Electronic energy + Delta-G solvation = -28909.311642 eV Core-core repulsion = 24754.475585 eV Total energy + Delta-G solvation = -4154.836057 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.05128 -40.08047 -39.00537 -37.71606 -36.94949 -34.62793 -34.38999 -33.50442 -31.66887 -30.91923 -30.81151 -29.19898 -28.18007 -25.40414 -24.47770 -23.24432 -21.92922 -21.60972 -20.77100 -19.96145 -18.78081 -18.43622 -18.01744 -17.37228 -16.69620 -16.39883 -15.91195 -15.55748 -15.16273 -14.93567 -14.80248 -14.66801 -14.23835 -14.08194 -13.69728 -13.63839 -13.17995 -13.09558 -12.89760 -12.81158 -12.47161 -12.37908 -12.23115 -12.14692 -11.81213 -11.20995 -10.90845 -10.71347 -10.55306 -10.24431 -10.18001 -10.05113 -9.74674 -9.30564 -9.09318 -8.90089 -8.40777 -8.30289 -8.00179 -7.31470 -7.29146 -4.67757 0.55348 0.93961 2.19847 2.44934 2.67653 2.78895 3.06111 3.31366 3.46246 3.53821 3.70259 3.81453 4.08930 4.32480 4.32815 4.54890 4.56885 4.58192 4.79169 4.93788 5.03942 5.08258 5.16274 5.44103 5.54210 5.61100 5.70051 5.88325 5.95207 5.99773 6.08242 6.19582 6.51227 6.58612 6.63601 6.69513 6.98746 7.25178 7.30952 7.47086 7.61805 7.67937 7.73164 7.77597 7.88388 8.18359 8.38249 8.51495 8.72793 9.58258 9.93854 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010116 B = 0.004206 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2767.238321 B = 6655.879164 C = 8856.919888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.506 3.494 3 O -0.516 6.516 4 N -0.676 5.676 5 C 0.127 3.873 6 C -0.104 4.104 7 C -0.136 4.136 8 C 0.156 3.844 9 O -0.475 6.475 10 C -0.138 4.138 11 C 0.559 3.441 12 O -0.494 6.494 13 N -0.648 5.648 14 C 0.385 3.615 15 C -0.316 4.316 16 C -0.036 4.036 17 C -0.282 4.282 18 C 0.276 3.724 19 C -0.493 4.493 20 H 0.085 0.915 21 C 0.063 3.937 22 N -0.791 5.791 23 Si 1.122 2.878 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.316 1.316 27 N -0.599 5.599 28 C -0.073 4.073 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.412 0.588 33 H 0.134 0.866 34 H 0.141 0.859 35 H 0.395 0.605 36 H 0.406 0.594 37 H 0.140 0.860 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.287 0.713 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.992 -19.640 -12.503 24.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.294 3.706 3 O -0.390 6.390 4 N -0.323 5.323 5 C 0.033 3.967 6 C -0.125 4.125 7 C -0.156 4.156 8 C 0.109 3.891 9 O -0.286 6.286 10 C -0.143 4.143 11 C 0.346 3.654 12 O -0.369 6.369 13 N -0.293 5.293 14 C 0.154 3.846 15 C -0.340 4.340 16 C -0.060 4.060 17 C -0.305 4.305 18 C 0.153 3.847 19 C -0.524 4.524 20 H 0.103 0.897 21 C -0.162 4.162 22 N -0.411 5.411 23 Si 0.953 3.047 24 H -0.204 1.204 25 H -0.211 1.211 26 H -0.246 1.246 27 N -0.324 5.324 28 C -0.094 4.094 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.100 0.900 32 H 0.248 0.752 33 H 0.152 0.848 34 H 0.158 0.842 35 H 0.253 0.747 36 H 0.243 0.757 37 H 0.157 0.843 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.098 0.902 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.898 -19.567 -12.517 24.231 hybrid contribution 1.360 0.822 -0.033 1.589 sum -5.539 -18.745 -12.550 23.228 Atomic orbital electron populations 1.21897 0.90326 1.05270 1.05492 1.21139 0.91127 0.83101 0.75224 1.90832 1.70375 1.31062 1.46743 1.43674 1.04659 1.10049 1.73889 1.17536 0.83122 0.97826 0.98220 1.20885 0.93582 0.99292 0.98725 1.21192 0.93839 0.99177 1.01342 1.18414 0.83673 0.92309 0.94699 1.84781 1.15134 1.74957 1.53715 1.20299 0.93248 0.98901 1.01848 1.17866 0.87080 0.80985 0.79492 1.90717 1.12819 1.72632 1.60720 1.43191 1.10794 1.24358 1.51003 1.18088 0.89357 0.86921 0.90268 1.21574 0.95385 1.06218 1.10860 1.20898 0.97724 0.93412 0.93938 1.21597 0.96453 1.06024 1.06394 1.18101 0.89097 0.86916 0.90614 1.20540 1.00909 1.11505 1.19463 0.89672 1.27478 0.91890 1.07834 0.88949 1.70617 1.35299 1.04995 1.30207 0.82571 0.74773 0.71610 0.75788 1.20439 1.21062 1.24642 1.66449 1.38793 1.13609 1.13531 1.21320 0.92934 0.98593 0.96579 0.88091 0.88289 0.89983 0.75174 0.84779 0.84167 0.74729 0.75699 0.84284 0.87763 0.87868 0.90181 0.83872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.92 10.31 36.01 0.37 -0.55 16 2 C 0.51 5.03 7.68 -10.98 -0.08 4.94 16 3 O -0.52 -7.98 14.79 5.55 0.08 -7.89 16 4 N -0.68 -5.19 5.35 -9.87 -0.05 -5.25 16 5 C 0.13 1.33 6.27 -83.68 -0.52 0.80 16 6 C -0.10 -0.85 9.94 -39.35 -0.39 -1.25 16 7 C -0.14 -1.28 9.97 -39.50 -0.39 -1.67 16 8 C 0.16 2.02 6.72 -38.71 -0.26 1.76 16 9 O -0.48 -6.26 11.56 -40.81 -0.47 -6.73 16 10 C -0.14 -2.12 5.88 -104.87 -0.62 -2.74 16 11 C 0.56 10.80 7.61 -12.49 -0.10 10.70 16 12 O -0.49 -10.48 11.91 -16.64 -0.20 -10.68 16 13 N -0.65 -13.77 5.35 -12.36 -0.07 -13.84 16 14 C 0.39 9.63 7.52 -155.05 -1.17 8.46 16 15 C -0.32 -7.71 8.84 -38.89 -0.34 -8.05 16 16 C -0.04 -0.84 10.15 -39.39 -0.40 -1.24 16 17 C -0.28 -7.13 9.83 -38.66 -0.38 -7.51 16 18 C 0.28 7.63 6.24 -85.00 -0.53 7.10 16 19 C -0.49 -13.80 9.37 -37.73 -0.35 -14.15 16 20 H 0.09 2.36 8.06 -52.48 -0.42 1.94 16 21 C 0.06 1.74 5.44 -17.35 -0.09 1.64 16 22 N -0.79 -21.56 13.65 55.55 0.76 -20.80 16 23 Si 1.12 27.74 26.09 -169.99 -4.43 23.31 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.32 -7.43 7.11 56.52 0.40 -7.03 16 27 N -0.60 -16.20 6.12 -10.27 -0.06 -16.27 16 28 C -0.07 -1.02 8.14 -38.98 -0.32 -1.34 16 29 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.10 0.59 8.14 -51.92 -0.42 0.17 16 31 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.41 1.40 8.82 -40.82 -0.36 1.04 16 33 H 0.13 0.63 8.06 -52.48 -0.42 0.20 16 34 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 35 H 0.39 3.63 9.06 45.56 0.41 4.04 16 36 H 0.41 8.07 6.87 -40.82 -0.28 7.79 16 37 H 0.14 3.34 5.27 -52.58 -0.28 3.07 16 38 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 39 H 0.10 2.42 8.06 -52.49 -0.42 2.00 16 40 H 0.29 7.49 8.72 -40.82 -0.36 7.13 16 41 H 0.14 2.21 4.79 -52.49 -0.25 1.96 16 LS Contribution 354.30 15.07 5.34 5.34 Total: -1.00 -36.72 354.30 -7.98 -44.69 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -3.29 Total: 11.19 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -5.58 Total: -3.08 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: 0.58 Total: -56.15 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.59 Total: -25.30 kcal Atomic # 14 Polarization: 27.74 SS G_CDS: -4.43 Total: 23.31 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.72 -7.98 -44.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001558101411.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.520 kcal (2) G-P(sol) polarization free energy of solvation -36.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds