Wall clock time and date at job start Sat Apr 11 2020 06:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21292 * 120.00119 * 2 1 4 4 N 1.34784 * 119.99423 * 179.97438 * 2 1 3 5 5 C 1.40129 * 119.99378 * 184.27685 * 4 2 1 6 6 C 1.39112 * 119.91868 * 213.86573 * 5 4 2 7 7 C 1.37992 * 120.32685 * 180.02562 * 6 5 4 8 8 C 1.38695 * 120.16493 * 0.02562 * 7 6 5 9 9 O 1.35727 * 120.07888 * 179.97438 * 8 7 6 10 10 C 1.40124 * 119.84218 * 359.97438 * 8 7 6 11 11 C 1.47494 * 120.16677 * 180.02562 * 10 8 7 12 12 O 1.21588 * 119.99795 * 359.97438 * 11 10 8 13 13 N 1.34777 * 120.00282 * 179.97438 * 11 10 8 14 14 C 1.39175 * 119.99762 * 185.69125 * 13 11 10 15 15 C 1.39692 * 119.57907 * 18.00030 * 14 13 11 16 16 C 1.38650 * 119.49509 * 180.02562 * 15 14 13 17 17 C 1.38353 * 118.66842 * 0.02562 * 16 15 14 18 18 C 1.40569 * 119.13578 * 359.97438 * 17 16 15 19 19 C 1.41340 * 119.78830 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99431 * 5.39936 * 19 18 17 21 21 C 1.40021 * 120.00257 * 185.41040 * 19 18 17 22 22 N 1.30746 * 119.99963 * 210.48335 * 21 19 18 23 23 Si 1.86800 * 120.00137 * 30.47977 * 21 19 18 24 24 H 1.48494 * 109.47429 * 270.00429 * 23 21 19 25 25 H 1.48501 * 109.47187 * 30.00318 * 23 21 19 26 26 H 1.48502 * 109.47097 * 150.00247 * 23 21 19 27 27 N 1.31920 * 119.57473 * 198.26182 * 14 13 11 28 28 C 1.38386 * 119.92433 * 34.14678 * 5 4 2 29 29 H 1.09002 * 109.47291 * 270.00151 * 1 2 3 30 30 H 1.09010 * 109.46883 * 30.00106 * 1 2 3 31 31 H 1.09004 * 109.47307 * 149.99906 * 1 2 3 32 32 H 0.97000 * 120.00445 * 4.27407 * 4 2 1 33 33 H 1.08003 * 119.83876 * 359.97438 * 6 5 4 34 34 H 1.08005 * 119.91968 * 180.02562 * 7 6 5 35 35 H 0.96692 * 114.00280 * 270.02821 * 9 8 7 36 36 H 0.96998 * 119.99994 * 5.69073 * 13 11 10 37 37 H 1.08006 * 120.25410 * 359.97438 * 15 14 13 38 38 H 1.08000 * 120.66503 * 179.97438 * 16 15 14 39 39 H 1.07999 * 120.42873 * 180.02562 * 17 16 15 40 40 H 0.96993 * 119.99681 * 354.99005 * 22 21 19 41 41 H 1.07994 * 120.08210 * 0.02562 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.5792 -1.1690 0.0910 6 6 4.3162 -2.1455 -0.5711 7 6 5.6935 -2.1554 -0.4873 8 6 6.3533 -1.1905 0.2593 9 8 7.7080 -1.2022 0.3409 10 6 5.6178 -0.2036 0.9290 11 6 6.3121 0.8263 1.7245 12 8 7.5256 0.8200 1.8007 13 7 5.6015 1.7744 2.3669 14 6 6.2581 2.8139 3.0189 15 6 7.5900 3.0934 2.7039 16 6 8.2426 4.1291 3.3549 17 6 7.5486 4.8585 4.3038 18 6 6.2097 4.5283 4.5762 19 6 5.4879 5.2640 5.5434 20 1 5.9354 6.1307 6.0072 21 6 4.1928 4.8692 5.9003 22 7 3.3178 5.7637 6.2795 23 14 3.7150 3.0645 5.8347 24 1 3.1743 2.7441 4.4893 25 1 4.9114 2.2258 6.0999 26 1 2.6795 2.7889 6.8629 27 7 5.6162 3.5195 3.9302 28 6 4.2234 -0.2026 0.8435 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 0.8901 -0.5139 31 1 -0.3634 -0.8900 -0.5139 32 1 1.6978 -2.0062 -0.0617 33 1 3.8078 -2.9002 -1.1529 34 1 6.2592 -2.9164 -1.0043 35 1 8.0532 -1.7251 1.0773 36 1 4.6324 1.7321 2.3749 37 1 8.1078 2.5066 1.9595 38 1 9.2723 4.3613 3.1264 39 1 8.0291 5.6715 4.8277 40 1 3.5854 6.6901 6.3835 41 1 3.6498 0.5519 1.3611 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001558101411.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:47 Heat of formation + Delta-G solvation = -75.451167 kcal Electronic energy + Delta-G solvation = -28910.492832 eV Core-core repulsion = 24754.475585 eV Total energy + Delta-G solvation = -4156.017247 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.15324 -41.32342 -40.31791 -39.31566 -37.87840 -36.27182 -35.57948 -35.25815 -32.91963 -32.79144 -31.47080 -30.97906 -28.92512 -27.37018 -25.75273 -24.29474 -23.59954 -23.20369 -21.59025 -21.55400 -20.45278 -19.77269 -19.22001 -18.48987 -17.87083 -17.66283 -16.98604 -16.82992 -16.63455 -16.40609 -16.12232 -15.96230 -15.77088 -15.50568 -15.05498 -14.86643 -14.66151 -14.32189 -14.23782 -13.92817 -13.76501 -13.70391 -13.44800 -13.15063 -13.03416 -12.96432 -12.82507 -12.19788 -12.04805 -11.80187 -11.59266 -11.43006 -11.03478 -10.97782 -10.71631 -10.40323 -10.20305 -10.03007 -9.40372 -9.27395 -9.11829 -6.79911 -0.45008 0.06863 0.59468 0.77542 1.41626 1.44095 1.54402 1.73899 1.78540 1.85103 2.05228 2.33299 2.48580 2.62158 3.20129 3.33683 3.54980 3.69031 3.84952 4.06744 4.09392 4.17665 4.34722 4.38803 4.51473 4.64336 4.66304 4.68593 4.68910 4.76984 4.86855 5.02303 5.14746 5.19244 5.26241 5.33475 5.39465 5.40659 5.71255 5.73367 5.79406 5.93627 6.21312 6.39402 6.40784 6.62079 6.80168 6.93042 7.12702 7.55182 7.82872 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010116 B = 0.004206 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2767.238321 B = 6655.879164 C = 8856.919888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.498 3.502 3 O -0.581 6.581 4 N -0.656 5.656 5 C 0.122 3.878 6 C -0.074 4.074 7 C -0.124 4.124 8 C 0.149 3.851 9 O -0.492 6.492 10 C -0.170 4.170 11 C 0.557 3.443 12 O -0.519 6.519 13 N -0.652 5.652 14 C 0.373 3.627 15 C -0.318 4.318 16 C -0.028 4.028 17 C -0.297 4.297 18 C 0.258 3.742 19 C -0.521 4.521 20 H 0.076 0.924 21 C 0.040 3.960 22 N -0.803 5.803 23 Si 1.151 2.849 24 H -0.277 1.277 25 H -0.298 1.298 26 H -0.295 1.295 27 N -0.617 5.617 28 C -0.091 4.091 29 H 0.110 0.890 30 H 0.090 0.910 31 H 0.123 0.877 32 H 0.436 0.564 33 H 0.186 0.814 34 H 0.177 0.823 35 H 0.408 0.592 36 H 0.410 0.590 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.117 0.883 40 H 0.287 0.713 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.866 -23.461 -14.869 28.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.289 3.711 3 O -0.460 6.460 4 N -0.305 5.305 5 C 0.027 3.973 6 C -0.094 4.094 7 C -0.142 4.142 8 C 0.102 3.898 9 O -0.305 6.305 10 C -0.174 4.174 11 C 0.347 3.653 12 O -0.396 6.396 13 N -0.298 5.298 14 C 0.141 3.859 15 C -0.343 4.343 16 C -0.052 4.052 17 C -0.319 4.319 18 C 0.133 3.867 19 C -0.553 4.553 20 H 0.094 0.906 21 C -0.182 4.182 22 N -0.424 5.424 23 Si 0.978 3.022 24 H -0.204 1.204 25 H -0.226 1.226 26 H -0.224 1.224 27 N -0.342 5.342 28 C -0.112 4.112 29 H 0.129 0.871 30 H 0.109 0.891 31 H 0.142 0.858 32 H 0.277 0.723 33 H 0.204 0.796 34 H 0.195 0.805 35 H 0.269 0.731 36 H 0.247 0.753 37 H 0.163 0.837 38 H 0.161 0.839 39 H 0.135 0.865 40 H 0.098 0.902 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.813 -23.455 -14.889 28.859 hybrid contribution 1.706 1.860 0.542 2.582 sum -6.107 -21.595 -14.347 26.636 Atomic orbital electron populations 1.21938 0.86685 1.06972 1.06554 1.22029 0.92893 0.82566 0.73626 1.90818 1.71891 1.33480 1.49808 1.43573 1.03632 1.10764 1.72519 1.17710 0.84564 0.97378 0.97609 1.21422 0.93087 0.98394 0.96453 1.21566 0.94485 0.98401 0.99778 1.18702 0.83553 0.92528 0.94991 1.84729 1.15591 1.75717 1.54496 1.20065 0.93926 0.99462 1.03938 1.18608 0.87027 0.80910 0.78737 1.90660 1.13867 1.73450 1.61639 1.43322 1.11099 1.24182 1.51181 1.18475 0.90038 0.87445 0.89948 1.21864 0.95336 1.06268 1.10791 1.21300 0.99323 0.92108 0.92485 1.21787 0.95879 1.06961 1.07322 1.18378 0.90263 0.87324 0.90727 1.20581 1.01741 1.12117 1.20862 0.90577 1.28133 0.91908 1.09532 0.88630 1.70628 1.35292 1.05157 1.31322 0.82215 0.74492 0.69200 0.76262 1.20379 1.22562 1.22409 1.66473 1.39475 1.14010 1.14264 1.21189 0.92385 0.99581 0.98023 0.87144 0.89071 0.85821 0.72260 0.79640 0.80544 0.73142 0.75293 0.83729 0.83879 0.86488 0.90179 0.86414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 10.31 71.24 0.73 -0.62 16 2 C 0.50 9.23 7.68 87.66 0.67 9.91 16 3 O -0.58 -18.47 14.79 -3.07 -0.05 -18.52 16 4 N -0.66 -8.07 5.35 -303.51 -1.62 -9.69 16 5 C 0.12 2.24 6.27 38.06 0.24 2.47 16 6 C -0.07 -0.83 9.94 22.42 0.22 -0.61 16 7 C -0.12 -1.78 9.97 22.32 0.22 -1.55 16 8 C 0.15 3.61 6.72 22.84 0.15 3.76 16 9 O -0.49 -12.41 11.56 -69.54 -0.80 -13.21 16 10 C -0.17 -5.22 5.88 -20.03 -0.12 -5.34 16 11 C 0.56 22.21 7.61 86.68 0.66 22.87 16 12 O -0.52 -22.48 11.91 16.97 0.20 -22.28 16 13 N -0.65 -28.88 5.35 -311.28 -1.67 -30.55 16 14 C 0.37 19.15 7.52 133.28 1.00 20.15 16 15 C -0.32 -15.65 8.84 22.72 0.20 -15.45 16 16 C -0.03 -1.31 10.15 22.40 0.23 -1.08 16 17 C -0.30 -15.16 9.83 22.87 0.22 -14.93 16 18 C 0.26 14.62 6.24 40.19 0.25 14.87 16 19 C -0.52 -30.24 9.37 23.47 0.22 -30.02 16 20 H 0.08 4.40 8.06 -2.91 -0.02 4.38 16 21 C 0.04 2.24 5.44 85.29 0.46 2.71 16 22 N -0.80 -44.73 13.65 21.84 0.30 -44.43 16 23 Si 1.15 57.53 26.09 68.60 1.79 59.32 16 24 H -0.28 -13.68 7.11 99.48 0.71 -12.98 16 25 H -0.30 -15.46 7.11 99.48 0.71 -14.75 16 26 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 27 N -0.62 -34.36 6.12 -186.41 -1.14 -35.50 16 28 C -0.09 -2.53 8.14 22.66 0.18 -2.34 16 29 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.12 -0.02 8.14 -2.38 -0.02 -0.04 16 32 H 0.44 0.88 8.82 -92.71 -0.82 0.06 16 33 H 0.19 0.28 8.06 -2.91 -0.02 0.26 16 34 H 0.18 1.33 8.06 -2.91 -0.02 1.30 16 35 H 0.41 7.15 9.06 -74.06 -0.67 6.48 16 36 H 0.41 17.30 6.87 -92.71 -0.64 16.67 16 37 H 0.15 6.99 5.27 -4.38 -0.02 6.97 16 38 H 0.14 5.45 8.06 -2.91 -0.02 5.42 16 39 H 0.12 5.51 8.06 -2.91 -0.02 5.49 16 40 H 0.29 15.44 8.72 -92.71 -0.81 14.63 16 41 H 0.12 3.87 4.79 -2.91 -0.01 3.86 16 Total: -1.00 -85.02 354.30 1.55 -83.47 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: -1.03 Total: 26.59 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: 5.56 Total: 4.79 kcal Atomic # 7 Polarization: -116.04 SS G_CDS: -4.13 Total: -120.17 kcal Atomic # 8 Polarization: -53.36 SS G_CDS: -0.65 Total: -54.01 kcal Atomic # 14 Polarization: 57.53 SS G_CDS: 1.79 Total: 59.32 kcal Total: -85.02 1.55 -83.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001558101411.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.024 kcal (2) G-P(sol) polarization free energy of solvation -85.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds