Wall clock time and date at job start Sat Apr 11 2020 06:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36209 * 116.99237 * 2 1 4 4 C 1.34080 * 122.50771 * 359.96974 * 3 2 1 5 5 S 1.70601 * 110.97906 * 179.78499 * 4 3 2 6 6 C 1.75818 * 91.61810 * 0.30861 * 5 4 3 7 7 C 1.46543 * 125.42431 * 179.97438 * 6 5 4 8 8 O 1.21713 * 119.99961 * 179.69369 * 7 6 5 9 9 N 1.34773 * 120.00165 * 359.96745 * 7 6 5 10 10 C 1.46500 * 120.00431 * 179.72460 * 9 7 6 11 11 H 1.09008 * 109.46846 * 325.00097 * 10 9 7 12 12 C 1.52996 * 109.47098 * 85.00044 * 10 9 7 13 13 C 1.52998 * 109.47391 * 205.00423 * 10 9 7 14 14 N 1.46899 * 109.47386 * 54.99927 * 13 10 9 15 15 C 1.46894 * 111.00290 * 180.02562 * 14 13 10 16 16 C 1.50696 * 109.47417 * 179.97438 * 15 14 13 17 17 O 1.21294 * 119.99997 * 359.97438 * 16 15 14 18 18 N 1.34778 * 120.00234 * 180.02562 * 16 15 14 19 19 C 1.37104 * 119.99995 * 180.02562 * 18 16 15 20 20 H 1.07993 * 119.99822 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99502 * 179.97438 * 19 18 16 22 22 N 1.31412 * 120.00595 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99585 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47085 * 59.99964 * 23 21 19 25 25 H 1.48495 * 109.47124 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47337 * 299.99988 * 23 21 19 27 27 C 1.36738 * 109.14562 * 359.69677 * 6 5 4 28 28 H 1.09003 * 109.46386 * 179.97438 * 1 2 3 29 29 H 1.08990 * 109.47629 * 300.00404 * 1 2 3 30 30 H 1.09003 * 109.47023 * 60.00603 * 1 2 3 31 31 H 1.08006 * 124.50733 * 0.02861 * 4 3 2 32 32 H 0.97000 * 120.00112 * 359.72897 * 9 7 6 33 33 H 1.09003 * 109.47061 * 180.02562 * 12 10 9 34 34 H 1.08998 * 109.47099 * 300.00391 * 12 10 9 35 35 H 1.08994 * 109.47099 * 60.00402 * 12 10 9 36 36 H 1.09003 * 109.47541 * 174.99916 * 13 10 9 37 37 H 1.09000 * 109.47194 * 294.99515 * 13 10 9 38 38 H 1.00898 * 111.00490 * 56.04446 * 14 13 10 39 39 H 1.09000 * 109.47236 * 300.00273 * 15 14 13 40 40 H 1.08998 * 109.47287 * 59.99723 * 15 14 13 41 41 H 0.97005 * 120.00444 * 359.97438 * 18 16 15 42 42 H 0.96998 * 119.99986 * 179.97438 * 22 21 19 43 43 H 1.08006 * 123.36623 * 180.22375 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0473 1.2137 0.0000 4 6 1.3668 2.3690 -0.0006 5 16 2.4293 3.7037 0.0056 6 6 3.8352 2.6480 -0.0005 7 6 5.2315 3.0929 0.0005 8 8 6.1313 2.2734 0.0016 9 7 5.5192 4.4096 0.0058 10 6 6.9150 4.8544 0.0129 11 1 7.5144 4.1607 0.6027 12 6 7.4450 4.8939 -1.4218 13 6 7.0016 6.2529 0.6273 14 7 6.3838 6.2414 1.9600 15 6 6.4481 7.5708 2.5815 16 6 5.8056 7.5201 3.9437 17 8 5.3395 6.4790 4.3561 18 7 5.7479 8.6318 4.7035 19 6 5.1638 8.5855 5.9430 20 1 4.7496 7.6583 6.3104 21 6 5.1049 9.7316 6.7264 22 7 5.6094 10.8597 6.2796 23 14 4.3084 9.6687 8.4150 24 1 5.0298 8.6888 9.2663 25 1 4.3740 11.0124 9.0436 26 1 2.8890 9.2546 8.2777 27 6 3.4182 1.3458 0.0001 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8898 30 1 -0.3633 0.5138 -0.8901 31 1 0.2893 2.4445 -0.0007 32 1 4.8021 5.0628 0.0049 33 1 8.4837 5.2244 -1.4165 34 1 7.3833 3.8975 -1.8595 35 1 6.8457 5.5875 -2.0115 36 1 8.0474 6.5475 0.7142 37 1 6.4759 6.9633 -0.0108 38 1 6.8117 5.5445 2.5510 39 1 7.4899 7.8750 2.6819 40 1 5.9182 8.2900 1.9569 41 1 6.1203 9.4646 4.3737 42 1 5.5679 11.6598 6.8264 43 1 4.0961 0.5050 0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569073429.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:51 Heat of formation + Delta-G solvation = -73.937196 kcal Electronic energy + Delta-G solvation = -26343.681579 eV Core-core repulsion = 22323.173934 eV Total energy + Delta-G solvation = -4020.507645 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.23189 -39.63776 -38.31517 -36.82275 -35.85835 -34.31243 -33.67236 -31.47622 -31.18093 -29.32843 -28.16202 -27.61567 -25.17762 -24.64080 -23.24352 -21.97721 -20.83276 -19.71706 -19.22319 -18.86984 -17.90142 -17.33583 -16.72395 -16.34760 -16.09185 -15.81332 -15.22190 -15.10952 -14.74386 -14.57118 -14.41302 -14.16507 -13.94848 -13.54826 -13.34736 -13.19345 -13.06015 -12.93852 -12.59213 -12.47624 -12.02346 -11.95853 -11.81544 -11.55466 -11.49679 -11.23660 -11.16326 -11.02869 -10.96144 -10.45203 -10.22506 -10.12627 -9.51062 -9.23240 -9.02109 -8.49798 -8.22596 -8.12339 -7.97388 -6.42892 -3.83712 0.29299 1.26158 1.69087 2.21834 2.84667 3.13477 3.19320 3.25039 3.27896 3.29622 3.89389 4.03893 4.27022 4.60755 4.71015 4.72341 4.85248 4.85900 5.03160 5.04009 5.08922 5.16357 5.21680 5.27066 5.43118 5.46637 5.54265 5.56228 5.71621 5.75982 5.83227 5.90907 5.93710 6.03379 6.23818 6.40174 6.95272 7.11986 7.43059 7.53995 7.57467 8.04892 8.11132 8.60023 9.16770 9.52964 10.04498 10.74748 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010486 B = 0.002512 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.678828 B =11144.646653 C =13235.946923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.306 6.306 3 C 0.101 3.899 4 C -0.344 4.344 5 S 0.244 5.756 6 C -0.236 4.236 7 C 0.594 3.406 8 O -0.533 6.533 9 N -0.701 5.701 10 C 0.146 3.854 11 H 0.090 0.910 12 C -0.162 4.162 13 C 0.047 3.953 14 N -0.668 5.668 15 C 0.051 3.949 16 C 0.440 3.560 17 O -0.581 6.581 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 C -0.072 4.072 28 H 0.100 0.900 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.170 0.830 32 H 0.403 0.597 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.046 0.954 37 H 0.078 0.922 38 H 0.352 0.648 39 H 0.044 0.956 40 H 0.086 0.914 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.963 -12.005 -18.417 22.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.221 6.221 3 C 0.044 3.956 4 C -0.482 4.482 5 S 0.511 5.489 6 C -0.357 4.357 7 C 0.379 3.621 8 O -0.412 6.412 9 N -0.352 5.352 10 C 0.041 3.959 11 H 0.108 0.892 12 C -0.221 4.221 13 C -0.083 4.083 14 N -0.301 5.301 15 C -0.082 4.082 16 C 0.225 3.775 17 O -0.465 6.465 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.107 4.107 28 H 0.118 0.882 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.188 0.812 32 H 0.239 0.761 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.097 0.903 38 H 0.171 0.829 39 H 0.062 0.938 40 H 0.104 0.896 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -5.403 -11.587 -18.257 22.288 hybrid contribution 0.112 -0.416 0.982 1.072 sum -5.291 -12.003 -17.275 21.691 Atomic orbital electron populations 1.23041 0.78259 1.03950 1.01324 1.86112 1.21236 1.25189 1.89525 1.17533 0.91547 0.84728 1.01786 1.25108 1.05882 0.97673 1.19538 1.83089 0.92494 1.05859 1.67440 1.24450 0.97947 0.97542 1.15765 1.16785 0.86157 0.82763 0.76346 1.90824 1.46723 1.53127 1.50512 1.45666 1.09036 1.06180 1.74283 1.21008 0.82281 0.95796 0.96784 0.89187 1.22150 1.01290 1.02763 0.95866 1.22327 0.98191 0.95868 0.91936 1.60057 1.60444 1.06467 1.03138 1.21675 0.99241 0.91521 0.95755 1.19802 0.85874 0.85135 0.86686 1.90539 1.51620 1.30637 1.73751 1.41859 1.52231 1.09955 1.15995 1.19649 1.33989 0.97425 0.91828 0.87994 1.25256 0.97716 0.94786 1.00159 1.69601 1.45703 1.00370 1.38689 0.85923 0.79680 0.77183 0.81474 1.19916 1.20980 1.19874 1.19906 0.92822 0.96898 1.01052 0.88159 0.92641 0.92810 0.81204 0.76131 0.91376 0.91745 0.92198 0.93603 0.90349 0.82860 0.93786 0.89569 0.77477 0.91824 0.82143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.93 101.05 1.00 1.20 16 2 O -0.31 -3.29 10.56 -20.41 -0.22 -3.51 16 3 C 0.10 1.16 6.61 -41.23 -0.27 0.88 16 4 C -0.34 -3.44 9.81 29.27 0.29 -3.15 16 5 S 0.24 2.52 22.15 -107.50 -2.38 0.14 16 6 C -0.24 -2.98 6.45 -36.78 -0.24 -3.22 16 7 C 0.59 8.30 7.75 -12.91 -0.10 8.20 16 8 O -0.53 -8.93 16.50 5.18 0.09 -8.85 16 9 N -0.70 -8.40 4.80 -55.16 -0.26 -8.67 16 10 C 0.15 1.61 2.81 -67.93 -0.19 1.42 16 11 H 0.09 1.14 7.58 -51.92 -0.39 0.75 16 12 C -0.16 -1.45 9.48 37.16 0.35 -1.10 16 13 C 0.05 0.51 5.24 -3.83 -0.02 0.49 16 14 N -0.67 -10.05 5.85 -115.07 -0.67 -10.72 16 15 C 0.05 0.84 6.17 -4.98 -0.03 0.81 16 16 C 0.44 10.14 7.82 -10.99 -0.09 10.05 16 17 O -0.58 -15.59 15.78 5.55 0.09 -15.50 16 18 N -0.56 -14.06 5.29 -10.96 -0.06 -14.12 16 19 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 20 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.33 13.05 55.50 0.72 -23.61 16 23 Si 0.93 20.98 29.55 -169.99 -5.02 15.95 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 C -0.07 -0.90 10.00 -40.31 -0.40 -1.30 16 28 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.34 7.84 -51.93 -0.41 -0.07 16 30 H 0.05 0.29 7.84 -51.93 -0.41 -0.12 16 31 H 0.17 1.29 6.96 -52.48 -0.37 0.92 16 32 H 0.40 4.47 7.71 -40.82 -0.31 4.16 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.35 5.81 8.43 -39.29 -0.33 5.48 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.39 9.32 7.90 -40.82 -0.32 8.99 16 42 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.16 1.97 8.06 -52.48 -0.42 1.55 16 LS Contribution 385.03 15.07 5.80 5.80 Total: -1.00 -33.56 385.03 -7.71 -41.27 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: -5.86 Total: 15.44 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: 0.06 Total: 6.36 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: -0.27 Total: -57.12 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -0.04 Total: -27.86 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 2.52 SS G_CDS: -2.38 Total: 0.14 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.56 -7.71 -41.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569073429.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.663 kcal (2) G-P(sol) polarization free energy of solvation -33.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds