Wall clock time and date at job start Sat Apr 11 2020 06:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36209 * 116.99237 * 2 1 4 4 C 1.34080 * 122.50771 * 359.96974 * 3 2 1 5 5 S 1.70601 * 110.97906 * 179.78499 * 4 3 2 6 6 C 1.75818 * 91.61810 * 0.30861 * 5 4 3 7 7 C 1.46543 * 125.42431 * 179.97438 * 6 5 4 8 8 O 1.21713 * 119.99961 * 179.69369 * 7 6 5 9 9 N 1.34773 * 120.00165 * 359.96745 * 7 6 5 10 10 C 1.46500 * 120.00431 * 179.72460 * 9 7 6 11 11 H 1.09008 * 109.46846 * 325.00097 * 10 9 7 12 12 C 1.52996 * 109.47098 * 85.00044 * 10 9 7 13 13 C 1.52998 * 109.47391 * 205.00423 * 10 9 7 14 14 N 1.46899 * 109.47386 * 54.99927 * 13 10 9 15 15 C 1.46894 * 111.00290 * 180.02562 * 14 13 10 16 16 C 1.50696 * 109.47417 * 179.97438 * 15 14 13 17 17 O 1.21294 * 119.99997 * 359.97438 * 16 15 14 18 18 N 1.34778 * 120.00234 * 180.02562 * 16 15 14 19 19 C 1.37104 * 119.99995 * 180.02562 * 18 16 15 20 20 H 1.07993 * 119.99822 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99502 * 179.97438 * 19 18 16 22 22 N 1.31412 * 120.00595 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99585 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47085 * 59.99964 * 23 21 19 25 25 H 1.48495 * 109.47124 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47337 * 299.99988 * 23 21 19 27 27 C 1.36738 * 109.14562 * 359.69677 * 6 5 4 28 28 H 1.09003 * 109.46386 * 179.97438 * 1 2 3 29 29 H 1.08990 * 109.47629 * 300.00404 * 1 2 3 30 30 H 1.09003 * 109.47023 * 60.00603 * 1 2 3 31 31 H 1.08006 * 124.50733 * 0.02861 * 4 3 2 32 32 H 0.97000 * 120.00112 * 359.72897 * 9 7 6 33 33 H 1.09003 * 109.47061 * 180.02562 * 12 10 9 34 34 H 1.08998 * 109.47099 * 300.00391 * 12 10 9 35 35 H 1.08994 * 109.47099 * 60.00402 * 12 10 9 36 36 H 1.09003 * 109.47541 * 174.99916 * 13 10 9 37 37 H 1.09000 * 109.47194 * 294.99515 * 13 10 9 38 38 H 1.00898 * 111.00490 * 56.04446 * 14 13 10 39 39 H 1.09000 * 109.47236 * 300.00273 * 15 14 13 40 40 H 1.08998 * 109.47287 * 59.99723 * 15 14 13 41 41 H 0.97005 * 120.00444 * 359.97438 * 18 16 15 42 42 H 0.96998 * 119.99986 * 179.97438 * 22 21 19 43 43 H 1.08006 * 123.36623 * 180.22375 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0473 1.2137 0.0000 4 6 1.3668 2.3690 -0.0006 5 16 2.4293 3.7037 0.0056 6 6 3.8352 2.6480 -0.0005 7 6 5.2315 3.0929 0.0005 8 8 6.1313 2.2734 0.0016 9 7 5.5192 4.4096 0.0058 10 6 6.9150 4.8544 0.0129 11 1 7.5144 4.1607 0.6027 12 6 7.4450 4.8939 -1.4218 13 6 7.0016 6.2529 0.6273 14 7 6.3838 6.2414 1.9600 15 6 6.4481 7.5708 2.5815 16 6 5.8056 7.5201 3.9437 17 8 5.3395 6.4790 4.3561 18 7 5.7479 8.6318 4.7035 19 6 5.1638 8.5855 5.9430 20 1 4.7496 7.6583 6.3104 21 6 5.1049 9.7316 6.7264 22 7 5.6094 10.8597 6.2796 23 14 4.3084 9.6687 8.4150 24 1 5.0298 8.6888 9.2663 25 1 4.3740 11.0124 9.0436 26 1 2.8890 9.2546 8.2777 27 6 3.4182 1.3458 0.0001 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8898 30 1 -0.3633 0.5138 -0.8901 31 1 0.2893 2.4445 -0.0007 32 1 4.8021 5.0628 0.0049 33 1 8.4837 5.2244 -1.4165 34 1 7.3833 3.8975 -1.8595 35 1 6.8457 5.5875 -2.0115 36 1 8.0474 6.5475 0.7142 37 1 6.4759 6.9633 -0.0108 38 1 6.8117 5.5445 2.5510 39 1 7.4899 7.8750 2.6819 40 1 5.9182 8.2900 1.9569 41 1 6.1203 9.4646 4.3737 42 1 5.5679 11.6598 6.8264 43 1 4.0961 0.5050 0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569073429.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:51 Heat of formation + Delta-G solvation = -100.494307 kcal Electronic energy + Delta-G solvation = -26344.833182 eV Core-core repulsion = 22323.173934 eV Total energy + Delta-G solvation = -4021.659248 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.14732 -40.55382 -40.08441 -37.90502 -36.75653 -36.01258 -35.14199 -33.24448 -32.39745 -30.20443 -28.94093 -28.75437 -26.71108 -25.66077 -24.52262 -22.85684 -21.80666 -21.03911 -20.57294 -19.88612 -19.77292 -18.13665 -17.97551 -17.44783 -17.12895 -16.80619 -16.56173 -16.36345 -16.17701 -15.88094 -15.52473 -15.31370 -15.21975 -14.97921 -14.57127 -14.12897 -14.01581 -13.85490 -13.69300 -13.51901 -13.32942 -13.06524 -12.98014 -12.78229 -12.70162 -12.59789 -12.41940 -12.12442 -12.02942 -11.92476 -11.83469 -11.48745 -11.22886 -10.34480 -10.20734 -9.99549 -9.91168 -9.33393 -9.04114 -8.45361 -5.93611 -0.62499 0.39555 0.83493 1.31340 1.40170 1.42202 1.52671 1.96078 2.08513 2.13189 2.29822 2.51023 2.91763 3.22340 3.53529 3.74141 3.83395 3.96638 4.09998 4.17301 4.34406 4.38168 4.39517 4.39959 4.54813 4.57614 4.61990 4.67118 4.73290 4.77075 4.79713 4.82344 4.99967 5.07150 5.29627 5.42107 5.46503 5.88609 6.10711 6.23429 6.32739 6.44467 6.62417 7.09452 7.14744 7.59110 8.14957 8.71702 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010486 B = 0.002512 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.678828 B =11144.646653 C =13235.946923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.326 6.326 3 C 0.087 3.913 4 C -0.334 4.334 5 S 0.280 5.720 6 C -0.263 4.263 7 C 0.589 3.411 8 O -0.572 6.572 9 N -0.694 5.694 10 C 0.144 3.856 11 H 0.069 0.931 12 C -0.153 4.153 13 C 0.053 3.947 14 N -0.682 5.682 15 C 0.066 3.934 16 C 0.436 3.564 17 O -0.624 6.624 18 N -0.574 5.574 19 C -0.333 4.333 20 H 0.077 0.923 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.990 3.010 24 H -0.274 1.274 25 H -0.270 1.270 26 H -0.272 1.272 27 C -0.084 4.084 28 H 0.119 0.881 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.198 0.802 32 H 0.409 0.591 33 H 0.086 0.914 34 H 0.046 0.954 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.100 0.900 38 H 0.340 0.660 39 H 0.068 0.932 40 H 0.112 0.888 41 H 0.397 0.603 42 H 0.277 0.723 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.818 -10.619 -19.326 22.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.241 6.241 3 C 0.030 3.970 4 C -0.472 4.472 5 S 0.547 5.453 6 C -0.384 4.384 7 C 0.376 3.624 8 O -0.454 6.454 9 N -0.344 5.344 10 C 0.040 3.960 11 H 0.087 0.913 12 C -0.212 4.212 13 C -0.076 4.076 14 N -0.314 5.314 15 C -0.066 4.066 16 C 0.224 3.776 17 O -0.510 6.510 18 N -0.211 5.211 19 C -0.462 4.462 20 H 0.095 0.905 21 C -0.212 4.212 22 N -0.560 5.560 23 Si 0.814 3.186 24 H -0.199 1.199 25 H -0.195 1.195 26 H -0.197 1.197 27 C -0.120 4.120 28 H 0.137 0.863 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.215 0.785 32 H 0.245 0.755 33 H 0.105 0.895 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.118 0.882 38 H 0.158 0.842 39 H 0.086 0.914 40 H 0.130 0.870 41 H 0.231 0.769 42 H 0.087 0.913 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.257 -10.151 -19.201 22.603 hybrid contribution 0.328 -0.886 1.222 1.544 sum -5.929 -11.037 -17.979 21.914 Atomic orbital electron populations 1.23346 0.76165 1.05661 1.02273 1.86092 1.23454 1.24971 1.89617 1.17520 0.91218 0.85592 1.02620 1.25450 1.07203 0.96990 1.17580 1.82892 0.90991 1.05071 1.66352 1.24428 0.98272 0.98367 1.17312 1.17031 0.86459 0.83055 0.75853 1.90789 1.47943 1.54100 1.52549 1.45688 1.09773 1.05641 1.73263 1.21099 0.81498 0.95451 0.97971 0.91329 1.22074 1.02634 1.02289 0.94171 1.22405 0.99455 0.95995 0.89723 1.60061 1.61583 1.05291 1.04426 1.21542 1.00040 0.93006 0.91985 1.20969 0.84415 0.83739 0.88471 1.90511 1.53154 1.32074 1.75274 1.41927 1.52685 1.10814 1.15691 1.19594 1.35855 0.97070 0.93725 0.90522 1.25989 0.97779 0.94182 1.03236 1.69656 1.45861 1.00703 1.39830 0.85037 0.78641 0.77666 0.77303 1.19925 1.19475 1.19691 1.20000 0.93700 0.96814 1.01452 0.86269 0.92009 0.91399 0.78525 0.75498 0.89528 0.93473 0.90522 0.91537 0.88167 0.84191 0.91418 0.87042 0.76909 0.91323 0.83151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.93 113.37 1.13 1.35 16 2 O -0.33 -6.88 10.56 -95.93 -1.01 -7.90 16 3 C 0.09 1.97 6.61 21.20 0.14 2.11 16 4 C -0.33 -6.17 9.81 66.87 0.66 -5.52 16 5 S 0.28 5.46 22.15 -56.49 -1.25 4.21 16 6 C -0.26 -6.79 6.45 24.09 0.16 -6.63 16 7 C 0.59 17.01 7.75 86.41 0.67 17.68 16 8 O -0.57 -20.22 16.50 -4.39 -0.07 -20.30 16 9 N -0.69 -16.37 4.80 -446.63 -2.14 -18.51 16 10 C 0.14 3.03 2.81 44.99 0.13 3.16 16 11 H 0.07 1.76 7.58 -2.38 -0.02 1.74 16 12 C -0.15 -2.47 9.48 71.98 0.68 -1.79 16 13 C 0.05 1.01 5.24 86.30 0.45 1.47 16 14 N -0.68 -19.45 5.85 -517.96 -3.03 -22.47 16 15 C 0.07 2.06 6.17 85.56 0.53 2.59 16 16 C 0.44 20.05 7.82 87.66 0.69 20.74 16 17 O -0.62 -34.04 15.78 -3.07 -0.05 -34.09 16 18 N -0.57 -28.71 5.29 -306.99 -1.62 -30.33 16 19 C -0.33 -18.70 9.68 84.04 0.81 -17.89 16 20 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 21 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 22 N -0.92 -48.93 13.05 21.66 0.28 -48.65 16 23 Si 0.99 42.65 29.55 68.60 2.03 44.68 16 24 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 25 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 26 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 27 C -0.08 -2.18 10.00 21.80 0.22 -1.96 16 28 H 0.12 0.88 8.14 -2.39 -0.02 0.87 16 29 H 0.06 0.63 7.84 -2.39 -0.02 0.61 16 30 H 0.07 0.59 7.84 -2.39 -0.02 0.57 16 31 H 0.20 2.44 6.96 -2.91 -0.02 2.42 16 32 H 0.41 8.61 7.71 -92.71 -0.71 7.89 16 33 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.05 0.94 8.14 -2.39 -0.02 0.93 16 35 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.34 11.14 8.43 -89.70 -0.76 10.38 16 39 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 41 H 0.40 18.72 7.90 -92.70 -0.73 17.98 16 42 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 43 H 0.15 4.05 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -74.64 385.03 -1.28 -75.92 By element: Atomic # 1 Polarization: 43.44 SS G_CDS: -1.13 Total: 42.31 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: 6.72 Total: 15.13 kcal Atomic # 7 Polarization: -113.46 SS G_CDS: -6.51 Total: -119.97 kcal Atomic # 8 Polarization: -61.15 SS G_CDS: -1.13 Total: -62.28 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Atomic # 16 Polarization: 5.46 SS G_CDS: -1.25 Total: 4.21 kcal Total: -74.64 -1.28 -75.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569073429.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.575 kcal (2) G-P(sol) polarization free energy of solvation -74.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds