Wall clock time and date at job start Sat Apr 11 2020 06:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.46793 * 2 1 4 4 C 1.46499 * 120.00006 * 263.41421 * 3 2 1 5 5 C 1.52995 * 109.47282 * 270.00521 * 4 3 2 6 6 C 1.53007 * 109.47152 * 180.02562 * 5 4 3 7 7 N 1.46501 * 109.47240 * 180.02562 * 6 5 4 8 8 C 1.34770 * 119.99936 * 180.02562 * 7 6 5 9 9 O 1.21279 * 120.00385 * 359.97438 * 8 7 6 10 10 C 1.50706 * 120.00106 * 179.97438 * 8 7 6 11 11 S 1.80991 * 109.47195 * 179.97438 * 10 8 7 12 12 C 1.76203 * 99.99809 * 179.97438 * 11 10 8 13 13 H 1.07998 * 120.00366 * 0.02562 * 12 11 10 14 14 C 1.38804 * 120.00156 * 180.02562 * 12 11 10 15 15 N 1.31633 * 119.99507 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00373 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.46799 * 359.97438 * 16 14 12 18 18 H 1.48491 * 109.47633 * 119.99646 * 16 14 12 19 19 H 1.48497 * 109.46911 * 240.00091 * 16 14 12 20 20 C 1.34774 * 120.00205 * 83.41735 * 3 2 1 21 21 O 1.21619 * 120.00287 * 183.96193 * 20 3 2 22 22 C 1.47424 * 120.00016 * 3.96704 * 20 3 2 23 23 C 1.36091 * 126.44696 * 173.65323 * 22 20 3 24 24 O 1.34256 * 106.94583 * 180.23739 * 23 22 20 25 25 C 1.34053 * 108.23004 * 359.57389 * 24 23 22 26 26 N 1.29937 * 109.23774 * 0.43448 * 25 24 23 27 27 H 1.08994 * 109.47393 * 60.00342 * 1 2 3 28 28 H 1.09002 * 109.46830 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47511 * 299.99959 * 1 2 3 30 30 H 1.08994 * 109.47271 * 239.99744 * 2 1 3 31 31 H 1.09004 * 109.47268 * 119.99526 * 2 1 3 32 32 H 1.09001 * 109.46969 * 30.00608 * 4 3 2 33 33 H 1.09004 * 109.47462 * 150.00131 * 4 3 2 34 34 H 1.09002 * 109.47286 * 299.99171 * 5 4 3 35 35 H 1.08993 * 109.47498 * 59.99838 * 5 4 3 36 36 H 1.09006 * 109.46875 * 299.99277 * 6 5 4 37 37 H 1.08993 * 109.47106 * 59.99531 * 6 5 4 38 38 H 0.97002 * 120.00119 * 359.97438 * 7 6 5 39 39 H 1.08998 * 109.46683 * 299.99962 * 10 8 7 40 40 H 1.09004 * 109.46935 * 59.99372 * 10 8 7 41 41 H 0.97006 * 119.99670 * 180.02562 * 15 14 12 42 42 H 1.07996 * 126.52867 * 359.97438 * 23 22 20 43 43 H 1.07994 * 125.38374 * 180.12955 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.3995 2.0233 -1.2603 5 6 3.8832 1.7692 -1.5338 6 6 4.2816 2.4404 -2.8498 7 7 5.7022 2.1966 -3.1119 8 6 6.2779 2.6966 -4.2231 9 8 5.6199 3.3481 -5.0064 10 6 7.7394 2.4463 -4.4926 11 16 8.2105 3.2401 -6.0493 12 6 9.9155 2.8001 -6.1134 13 1 10.3503 2.2072 -5.3223 14 6 10.6999 3.2156 -7.1805 15 7 10.1699 3.9378 -8.1449 16 14 12.5073 2.7486 -7.2488 17 1 12.8549 1.9393 -6.0532 18 1 12.7676 1.9552 -8.4767 19 1 13.3363 3.9804 -7.2703 20 6 2.1167 2.0612 1.1595 21 8 2.4530 3.2299 1.1524 22 6 1.8168 1.3882 2.4364 23 6 1.9878 1.9065 3.6831 24 8 1.5980 0.9636 4.5557 25 6 1.1875 -0.1068 3.8609 26 7 1.3163 0.1324 2.5903 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.8040 1.6091 -2.0739 33 1 2.2216 3.0965 -1.1899 34 1 4.4788 2.1836 -0.7203 35 1 4.0612 0.6962 -1.6043 36 1 3.6862 2.0264 -3.6636 37 1 4.1038 3.5134 -2.7788 38 1 6.2286 1.6759 -2.4853 39 1 8.3348 2.8598 -3.6786 40 1 7.9171 1.3732 -4.5639 41 1 10.7179 4.2279 -8.8909 42 1 2.3690 2.8877 3.9246 43 1 0.8138 -1.0249 4.2896 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001577476271.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:41 Heat of formation + Delta-G solvation = -41.599174 kcal Electronic energy + Delta-G solvation = -25880.226213 eV Core-core repulsion = 21861.120850 eV Total energy + Delta-G solvation = -4019.105363 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.99849 -40.24141 -39.10049 -36.76188 -35.67558 -34.89972 -32.43606 -32.39114 -30.94483 -30.41791 -28.99624 -26.25492 -25.43975 -24.29404 -23.37494 -23.25526 -21.94373 -20.49605 -19.96970 -18.19214 -17.81440 -17.34990 -17.20585 -16.78234 -16.24613 -15.82303 -15.66045 -15.45677 -15.29562 -14.78908 -14.57185 -14.39986 -14.13059 -13.96135 -13.85339 -13.16096 -13.08264 -12.83868 -12.60887 -12.46246 -12.26509 -12.12257 -11.81134 -11.72133 -11.52056 -11.07387 -11.04291 -11.00019 -10.87293 -10.74480 -10.43248 -9.78985 -9.75849 -9.41595 -9.06097 -9.03630 -8.84822 -8.20732 -6.47721 -6.20067 -3.90263 0.59144 1.48669 2.12250 2.49188 2.82667 3.08520 3.14045 3.22798 3.29781 3.34877 3.43081 3.76567 4.10373 4.22040 4.30175 4.62351 4.69133 4.81639 4.83164 4.93994 5.04306 5.06014 5.15062 5.16212 5.17486 5.22523 5.31320 5.37605 5.47920 5.59149 5.68437 5.72522 5.85709 5.94126 5.97329 6.00640 6.16793 6.19085 6.64990 6.79872 6.99131 7.61651 7.69464 7.74501 8.37231 8.65173 9.25341 10.87436 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.024298 B = 0.001606 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.080013 B =17435.746289 C =17889.722257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.097 3.903 3 N -0.595 5.595 4 C 0.117 3.883 5 C -0.145 4.145 6 C 0.125 3.875 7 N -0.739 5.739 8 C 0.531 3.469 9 O -0.518 6.518 10 C -0.153 4.153 11 S -0.061 6.061 12 C -0.535 4.535 13 H 0.073 0.927 14 C 0.073 3.927 15 N -0.867 5.867 16 Si 0.919 3.081 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.280 1.280 20 C 0.599 3.401 21 O -0.533 6.533 22 C -0.073 4.073 23 C 0.019 3.981 24 O -0.199 6.199 25 C 0.175 3.825 26 N -0.460 5.460 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.109 0.891 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.398 0.602 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.268 0.732 42 H 0.230 0.770 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.297 -11.840 26.988 36.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.025 4.025 3 N -0.326 5.326 4 C -0.006 4.006 5 C -0.184 4.184 6 C 0.000 4.000 7 N -0.394 5.394 8 C 0.317 3.683 9 O -0.392 6.392 10 C -0.304 4.304 11 S 0.166 5.834 12 C -0.683 4.683 13 H 0.091 0.909 14 C -0.136 4.136 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.206 1.206 20 C 0.386 3.614 21 O -0.410 6.410 22 C -0.192 4.192 23 C -0.055 4.055 24 O -0.084 6.084 25 C -0.053 4.053 26 N -0.189 5.189 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.127 0.873 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.231 0.769 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.077 0.923 42 H 0.247 0.753 43 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -22.364 -10.463 25.012 35.146 hybrid contribution 2.260 -1.062 1.684 3.012 sum -20.105 -11.525 26.696 35.351 Atomic orbital electron populations 1.22029 0.95645 1.02066 1.01650 1.21990 0.94915 0.81283 1.04332 1.47786 1.63745 1.14951 1.06152 1.21441 0.94593 0.99906 0.84612 1.22137 0.96849 1.01550 0.97853 1.21135 0.82246 1.00745 0.95881 1.45975 1.10770 1.57373 1.25239 1.20303 0.89273 0.78431 0.80264 1.90701 1.64541 1.38132 1.45831 1.23532 0.94217 1.05526 1.07126 1.85399 1.10386 1.68760 1.18863 1.22917 0.94835 1.39518 1.11045 0.90880 1.25000 0.99321 0.94661 0.94662 1.70035 1.36349 1.34113 1.09779 0.86110 0.82843 0.78335 0.78164 1.19635 1.20574 1.20573 1.16840 0.77330 0.85196 0.82038 1.90861 1.48242 1.15250 1.86602 1.21767 1.09388 0.92710 0.95342 1.25351 0.98633 0.94647 0.86899 1.84461 1.61454 1.23083 1.39361 1.28301 0.98837 0.92376 0.85773 1.70975 1.16424 1.14021 1.17522 0.93181 0.91652 0.92469 0.90775 0.87303 0.89683 0.89085 0.90845 0.91048 0.91479 0.91338 0.76875 0.89230 0.89248 0.92250 0.75349 0.73024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 9.71 37.16 0.36 -0.61 16 2 C 0.10 0.65 5.71 -4.04 -0.02 0.62 16 3 N -0.60 -5.14 2.49 -174.96 -0.44 -5.58 16 4 C 0.12 1.00 5.41 -4.05 -0.02 0.98 16 5 C -0.14 -1.29 5.65 -26.73 -0.15 -1.44 16 6 C 0.12 1.48 5.67 -4.04 -0.02 1.45 16 7 N -0.74 -10.21 5.56 -60.29 -0.33 -10.54 16 8 C 0.53 10.20 7.85 -10.99 -0.09 10.12 16 9 O -0.52 -12.07 15.86 5.56 0.09 -11.98 16 10 C -0.15 -3.16 6.16 36.01 0.22 -2.94 16 11 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 12 C -0.53 -15.43 9.50 30.94 0.29 -15.13 16 13 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 14 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 15 N -0.87 -26.41 13.22 55.49 0.73 -25.67 16 16 Si 0.92 21.61 29.55 -169.99 -5.02 16.58 16 17 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 20 C 0.60 6.16 7.61 -12.52 -0.10 6.07 16 21 O -0.53 -7.04 16.45 5.26 0.09 -6.95 16 22 C -0.07 -0.59 6.47 -83.02 -0.54 -1.12 16 23 C 0.02 0.11 11.95 29.96 0.36 0.47 16 24 O -0.20 -0.98 10.73 6.50 0.07 -0.91 16 25 C 0.18 0.61 13.19 51.96 0.69 1.30 16 26 N -0.46 -2.88 6.61 -11.48 -0.08 -2.96 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.43 7.02 -51.93 -0.36 0.06 16 30 H 0.07 0.42 8.02 -51.93 -0.42 0.00 16 31 H 0.11 0.75 5.32 -51.93 -0.28 0.48 16 32 H 0.08 0.59 8.07 -51.93 -0.42 0.17 16 33 H 0.09 0.90 7.37 -51.93 -0.38 0.52 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.40 4.34 8.47 -40.82 -0.35 4.00 16 39 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 40 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 41 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.23 0.90 8.06 -52.49 -0.42 0.47 16 43 H 0.25 -0.36 8.06 -52.49 -0.42 -0.78 16 LS Contribution 384.38 15.07 5.79 5.79 Total: -1.00 -38.48 384.38 -6.40 -44.88 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -5.98 Total: -0.54 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 0.89 Total: 1.76 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: -0.11 Total: -44.75 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: 0.24 Total: -19.85 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -38.48 -6.40 -44.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577476271.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.285 kcal (2) G-P(sol) polarization free energy of solvation -38.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds