Wall clock time and date at job start Sat Apr 11 2020 06:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.46793 * 2 1 4 4 C 1.46499 * 120.00006 * 263.41421 * 3 2 1 5 5 C 1.52995 * 109.47282 * 270.00521 * 4 3 2 6 6 C 1.53007 * 109.47152 * 180.02562 * 5 4 3 7 7 N 1.46501 * 109.47240 * 180.02562 * 6 5 4 8 8 C 1.34770 * 119.99936 * 180.02562 * 7 6 5 9 9 O 1.21279 * 120.00385 * 359.97438 * 8 7 6 10 10 C 1.50706 * 120.00106 * 179.97438 * 8 7 6 11 11 S 1.80991 * 109.47195 * 179.97438 * 10 8 7 12 12 C 1.76203 * 99.99809 * 179.97438 * 11 10 8 13 13 H 1.07998 * 120.00366 * 0.02562 * 12 11 10 14 14 C 1.38804 * 120.00156 * 180.02562 * 12 11 10 15 15 N 1.31633 * 119.99507 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00373 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.46799 * 359.97438 * 16 14 12 18 18 H 1.48491 * 109.47633 * 119.99646 * 16 14 12 19 19 H 1.48497 * 109.46911 * 240.00091 * 16 14 12 20 20 C 1.34774 * 120.00205 * 83.41735 * 3 2 1 21 21 O 1.21619 * 120.00287 * 183.96193 * 20 3 2 22 22 C 1.47424 * 120.00016 * 3.96704 * 20 3 2 23 23 C 1.36091 * 126.44696 * 173.65323 * 22 20 3 24 24 O 1.34256 * 106.94583 * 180.23739 * 23 22 20 25 25 C 1.34053 * 108.23004 * 359.57389 * 24 23 22 26 26 N 1.29937 * 109.23774 * 0.43448 * 25 24 23 27 27 H 1.08994 * 109.47393 * 60.00342 * 1 2 3 28 28 H 1.09002 * 109.46830 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47511 * 299.99959 * 1 2 3 30 30 H 1.08994 * 109.47271 * 239.99744 * 2 1 3 31 31 H 1.09004 * 109.47268 * 119.99526 * 2 1 3 32 32 H 1.09001 * 109.46969 * 30.00608 * 4 3 2 33 33 H 1.09004 * 109.47462 * 150.00131 * 4 3 2 34 34 H 1.09002 * 109.47286 * 299.99171 * 5 4 3 35 35 H 1.08993 * 109.47498 * 59.99838 * 5 4 3 36 36 H 1.09006 * 109.46875 * 299.99277 * 6 5 4 37 37 H 1.08993 * 109.47106 * 59.99531 * 6 5 4 38 38 H 0.97002 * 120.00119 * 359.97438 * 7 6 5 39 39 H 1.08998 * 109.46683 * 299.99962 * 10 8 7 40 40 H 1.09004 * 109.46935 * 59.99372 * 10 8 7 41 41 H 0.97006 * 119.99670 * 180.02562 * 15 14 12 42 42 H 1.07996 * 126.52867 * 359.97438 * 23 22 20 43 43 H 1.07994 * 125.38374 * 180.12955 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.3995 2.0233 -1.2603 5 6 3.8832 1.7692 -1.5338 6 6 4.2816 2.4404 -2.8498 7 7 5.7022 2.1966 -3.1119 8 6 6.2779 2.6966 -4.2231 9 8 5.6199 3.3481 -5.0064 10 6 7.7394 2.4463 -4.4926 11 16 8.2105 3.2401 -6.0493 12 6 9.9155 2.8001 -6.1134 13 1 10.3503 2.2072 -5.3223 14 6 10.6999 3.2156 -7.1805 15 7 10.1699 3.9378 -8.1449 16 14 12.5073 2.7486 -7.2488 17 1 12.8549 1.9393 -6.0532 18 1 12.7676 1.9552 -8.4767 19 1 13.3363 3.9804 -7.2703 20 6 2.1167 2.0612 1.1595 21 8 2.4530 3.2299 1.1524 22 6 1.8168 1.3882 2.4364 23 6 1.9878 1.9065 3.6831 24 8 1.5980 0.9636 4.5557 25 6 1.1875 -0.1068 3.8609 26 7 1.3163 0.1324 2.5903 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.8040 1.6091 -2.0739 33 1 2.2216 3.0965 -1.1899 34 1 4.4788 2.1836 -0.7203 35 1 4.0612 0.6962 -1.6043 36 1 3.6862 2.0264 -3.6636 37 1 4.1038 3.5134 -2.7788 38 1 6.2286 1.6759 -2.4853 39 1 8.3348 2.8598 -3.6786 40 1 7.9171 1.3732 -4.5639 41 1 10.7179 4.2279 -8.8909 42 1 2.3690 2.8877 3.9246 43 1 0.8138 -1.0249 4.2896 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001577476271.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:40 Heat of formation + Delta-G solvation = -70.727068 kcal Electronic energy + Delta-G solvation = -25881.489293 eV Core-core repulsion = 21861.120850 eV Total energy + Delta-G solvation = -4020.368443 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.38894 -40.98892 -40.55216 -37.56987 -36.47535 -35.67204 -34.58789 -33.39486 -31.41003 -31.37068 -30.22202 -27.72981 -27.01984 -24.93330 -23.93906 -23.68435 -22.72412 -21.80462 -20.67099 -19.82531 -18.74143 -17.91555 -17.81492 -17.72705 -17.49347 -16.89070 -16.83981 -16.80607 -16.20156 -15.91125 -15.71862 -15.64345 -15.00180 -14.82300 -14.64410 -14.45920 -14.40440 -13.94474 -13.74170 -13.36486 -13.16365 -13.13680 -12.91122 -12.85805 -12.63817 -12.58791 -12.52420 -11.98342 -11.87080 -11.71617 -11.50477 -11.16101 -11.09070 -10.96083 -10.27905 -10.23593 -10.13966 -9.72457 -8.67237 -8.35076 -6.13269 0.10652 1.08597 1.26447 1.41434 1.46464 1.57675 1.60099 1.70540 1.94637 2.18586 2.26501 2.34231 2.99092 3.05515 3.31741 3.64127 3.86625 3.89082 3.93549 3.97048 4.14341 4.23250 4.28728 4.40576 4.50207 4.50778 4.54800 4.56680 4.63352 4.69972 4.75679 4.89141 4.98211 5.05559 5.13050 5.25365 5.41264 5.42088 5.50219 5.59167 6.19858 6.22185 6.48570 6.51508 6.99301 7.06227 7.22743 8.74479 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.024298 B = 0.001606 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.080013 B =17435.746289 C =17889.722257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.097 3.903 3 N -0.593 5.593 4 C 0.116 3.884 5 C -0.126 4.126 6 C 0.125 3.875 7 N -0.713 5.713 8 C 0.533 3.467 9 O -0.566 6.566 10 C -0.130 4.130 11 S -0.152 6.152 12 C -0.546 4.546 13 H 0.083 0.917 14 C 0.012 3.988 15 N -0.911 5.911 16 Si 1.000 3.000 17 H -0.257 1.257 18 H -0.273 1.273 19 H -0.274 1.274 20 C 0.591 3.409 21 O -0.575 6.575 22 C -0.100 4.100 23 C 0.023 3.977 24 O -0.200 6.200 25 C 0.194 3.806 26 N -0.480 5.480 27 H 0.044 0.956 28 H 0.080 0.920 29 H 0.042 0.958 30 H 0.089 0.911 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.053 0.947 38 H 0.416 0.584 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.271 0.729 42 H 0.242 0.758 43 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.985 -14.608 29.255 38.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 N -0.323 5.323 4 C -0.007 4.007 5 C -0.165 4.165 6 C 0.001 3.999 7 N -0.367 5.367 8 C 0.318 3.682 9 O -0.445 6.445 10 C -0.281 4.281 11 S 0.075 5.925 12 C -0.694 4.694 13 H 0.101 0.899 14 C -0.192 4.192 15 N -0.548 5.548 16 Si 0.822 3.178 17 H -0.180 1.180 18 H -0.198 1.198 19 H -0.200 1.200 20 C 0.380 3.620 21 O -0.455 6.455 22 C -0.218 4.218 23 C -0.051 4.051 24 O -0.085 6.085 25 C -0.034 4.034 26 N -0.209 5.209 27 H 0.063 0.937 28 H 0.099 0.901 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.128 0.872 32 H 0.123 0.877 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.110 0.890 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.253 0.747 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.080 0.920 42 H 0.258 0.742 43 H 0.315 0.685 Dipole moment (debyes) X Y Z Total from point charges -22.074 -13.291 27.320 37.554 hybrid contribution 2.019 -0.279 1.122 2.327 sum -20.055 -13.570 28.443 37.354 Atomic orbital electron populations 1.21960 0.95280 1.02749 1.00681 1.22130 0.95147 0.80095 1.05117 1.47888 1.63077 1.15617 1.05673 1.21418 0.94667 0.99159 0.85411 1.21961 0.96817 1.02205 0.95519 1.21242 0.80764 1.00342 0.97570 1.45734 1.11736 1.55724 1.23546 1.20081 0.88591 0.78349 0.81134 1.90691 1.65270 1.40615 1.47878 1.23375 0.95530 1.05965 1.03219 1.85584 1.11541 1.70817 1.24576 1.23247 0.94872 1.39684 1.11606 0.89874 1.26150 1.04801 0.94280 0.94011 1.70197 1.38513 1.35430 1.10637 0.84883 0.75873 0.78264 0.78784 1.18018 1.19836 1.19971 1.17227 0.76709 0.84891 0.83162 1.90826 1.50377 1.16988 1.87331 1.21595 1.11438 0.93939 0.94861 1.25606 0.97775 0.95212 0.86539 1.84498 1.61461 1.23307 1.39210 1.29365 0.96303 0.92737 0.84993 1.70914 1.17593 1.13344 1.19062 0.93680 0.90093 0.93850 0.89284 0.87169 0.87706 0.90987 0.91793 0.89034 0.91187 0.92819 0.74738 0.87340 0.86994 0.91980 0.74171 0.68535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.71 71.98 0.70 -0.93 16 2 C 0.10 1.12 5.71 86.38 0.49 1.61 16 3 N -0.59 -9.81 2.49 -825.71 -2.05 -11.86 16 4 C 0.12 1.91 5.41 86.38 0.47 2.37 16 5 C -0.13 -2.06 5.65 30.59 0.17 -1.89 16 6 C 0.13 2.84 5.67 86.38 0.49 3.33 16 7 N -0.71 -18.56 5.56 -463.05 -2.57 -21.13 16 8 C 0.53 20.17 7.85 87.66 0.69 20.86 16 9 O -0.57 -26.92 15.86 -3.03 -0.05 -26.97 16 10 C -0.13 -5.23 6.16 71.24 0.44 -4.79 16 11 S -0.15 -8.60 20.57 -56.49 -1.16 -9.76 16 12 C -0.55 -31.54 9.50 67.96 0.65 -30.90 16 13 H 0.08 4.46 7.80 -2.91 -0.02 4.43 16 14 C 0.01 0.70 5.49 84.86 0.47 1.17 16 15 N -0.91 -56.50 13.22 21.65 0.29 -56.22 16 16 Si 1.00 43.96 29.55 68.60 2.03 45.99 16 17 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 18 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 19 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 20 C 0.59 12.27 7.61 86.66 0.66 12.93 16 21 O -0.57 -15.83 16.45 -4.09 -0.07 -15.89 16 22 C -0.10 -1.56 6.47 40.41 0.26 -1.29 16 23 C 0.02 0.26 11.95 67.32 0.80 1.07 16 24 O -0.20 -1.58 10.73 0.36 0.00 -1.58 16 25 C 0.19 0.83 13.19 130.52 1.72 2.56 16 26 N -0.48 -5.19 6.61 -305.15 -2.02 -7.21 16 27 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.04 0.60 7.02 -2.38 -0.02 0.59 16 30 H 0.09 0.77 8.02 -2.39 -0.02 0.75 16 31 H 0.11 1.31 5.32 -2.39 -0.01 1.30 16 32 H 0.10 1.29 8.07 -2.39 -0.02 1.27 16 33 H 0.07 1.48 7.37 -2.38 -0.02 1.46 16 34 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 37 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.42 7.94 8.47 -92.71 -0.79 7.15 16 39 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 40 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 41 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 42 H 0.24 1.83 8.06 -2.91 -0.02 1.80 16 43 H 0.30 -2.11 8.06 -2.91 -0.02 -2.13 16 Total: -1.00 -87.13 384.38 2.66 -84.47 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.25 Total: 14.07 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: 8.01 Total: 6.10 kcal Atomic # 7 Polarization: -90.06 SS G_CDS: -6.36 Total: -96.42 kcal Atomic # 8 Polarization: -44.33 SS G_CDS: -0.11 Total: -44.44 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.76 kcal Total: -87.13 2.66 -84.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577476271.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.740 kcal (2) G-P(sol) polarization free energy of solvation -87.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds