Wall clock time and date at job start Sat Apr 11 2020 06:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46680 * 2 1 4 4 C 1.50700 * 109.47271 * 119.99933 * 2 1 3 5 5 H 1.07997 * 119.99772 * 119.99639 * 4 2 1 6 6 C 1.37872 * 119.99969 * 300.00261 * 4 2 1 7 7 N 1.31514 * 120.00424 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99832 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47088 * 60.00161 * 8 6 4 10 10 H 1.48504 * 109.46888 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47088 * 299.99799 * 8 6 4 12 12 C 1.50694 * 109.47241 * 240.00302 * 2 1 3 13 13 O 1.21285 * 120.00148 * 267.60986 * 12 2 1 14 14 N 1.34779 * 120.00142 * 87.60870 * 12 2 1 15 15 C 1.46500 * 120.00089 * 356.46859 * 14 12 2 16 16 C 1.53000 * 109.46940 * 262.67519 * 15 14 12 17 17 C 1.50704 * 109.47149 * 174.12441 * 16 15 14 18 18 O 1.20823 * 119.99812 * 0.02562 * 17 16 15 19 19 O 1.34232 * 119.99930 * 180.02562 * 17 16 15 20 20 C 1.46506 * 119.99998 * 176.46667 * 14 12 2 21 21 C 1.50697 * 109.46831 * 90.00091 * 20 14 12 22 22 C 1.38260 * 120.00143 * 105.00458 * 21 20 14 23 23 C 1.38211 * 120.07134 * 179.97438 * 22 21 20 24 24 C 1.38258 * 120.07084 * 359.97438 * 23 22 21 25 25 C 1.38373 * 119.99961 * 0.02562 * 24 23 22 26 26 F 1.35101 * 120.02947 * 180.02562 * 25 24 23 27 27 C 1.38370 * 120.00123 * 284.97146 * 21 20 14 28 28 F 1.35103 * 120.03429 * 0.02562 * 27 21 20 29 29 H 1.09000 * 109.47164 * 45.37386 * 1 2 3 30 30 H 1.09002 * 109.47091 * 165.37118 * 1 2 3 31 31 H 1.08997 * 109.47006 * 285.37228 * 1 2 3 32 32 H 0.97001 * 120.00407 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.46843 * 22.66944 * 15 14 12 34 34 H 1.08990 * 109.47260 * 142.67408 * 15 14 12 35 35 H 1.09003 * 109.47138 * 294.13043 * 16 15 14 36 36 H 1.09006 * 109.47649 * 54.12577 * 16 15 14 37 37 H 0.96699 * 117.00011 * 180.02562 * 19 17 16 38 38 H 1.08998 * 109.46918 * 330.00262 * 20 14 12 39 39 H 1.08996 * 109.46951 * 210.00286 * 20 14 12 40 40 H 1.07993 * 119.95967 * 0.24586 * 22 21 20 41 41 H 1.08003 * 119.96530 * 180.02562 * 23 22 21 42 42 H 1.08002 * 120.00197 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.8064 -1.1209 4.0081 10 1 1.8260 -0.4206 5.2204 11 1 1.8259 -2.5202 4.0077 12 6 2.0324 -0.7103 -1.2304 13 8 2.2758 -1.8977 -1.1883 14 7 2.2111 -0.0261 -2.3778 15 6 1.8442 1.3903 -2.4508 16 6 0.4532 1.5253 -3.0736 17 6 0.0152 2.9662 -3.0172 18 8 0.7413 3.7996 -2.5294 19 8 -1.1816 3.3236 -3.5089 20 6 2.7724 -0.6988 -3.5520 21 6 1.6560 -1.2902 -4.3736 22 6 1.2723 -0.6849 -5.5559 23 6 0.2489 -1.2262 -6.3108 24 6 -0.3929 -2.3746 -5.8855 25 6 -0.0113 -2.9828 -4.7026 26 9 -0.6377 -4.1052 -4.2867 27 6 1.0153 -2.4393 -3.9450 28 9 1.3898 -3.0315 -2.7898 29 1 -0.3633 0.7219 -0.7314 30 1 -0.3633 -0.9944 -0.2595 31 1 -0.3633 0.2724 0.9909 32 1 0.7089 1.1613 3.4844 33 1 1.8357 1.8156 -1.4472 34 1 2.5704 1.9226 -3.0649 35 1 0.4866 1.1960 -4.1122 36 1 -0.2545 0.9085 -2.5196 37 1 -1.4185 4.2593 -3.4506 38 1 3.4455 -1.4929 -3.2286 39 1 3.3244 0.0224 -4.1547 40 1 1.7757 0.2094 -5.8921 41 1 -0.0492 -0.7522 -7.2343 42 1 -1.1922 -2.7969 -6.4764 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592211226.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:56 Heat of formation + Delta-G solvation = -184.934970 kcal Electronic energy + Delta-G solvation = -31302.529882 eV Core-core repulsion = 26691.075874 eV Total energy + Delta-G solvation = -4611.454007 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.22968 -48.19540 -40.34820 -39.56916 -38.57175 -36.22572 -35.37831 -33.92819 -32.37497 -30.73296 -30.29760 -30.23987 -26.58680 -25.21001 -24.64311 -22.81593 -22.73026 -21.50687 -21.09382 -18.59534 -18.01417 -17.64118 -17.24649 -16.99512 -16.61673 -16.44799 -16.13939 -15.99232 -15.62483 -15.20012 -14.95840 -14.70782 -14.50903 -14.30104 -14.14783 -13.59449 -13.32407 -13.16212 -13.00953 -12.84845 -12.47749 -12.23842 -12.15281 -11.99990 -11.64249 -11.53010 -11.36883 -11.22623 -11.14942 -10.99554 -10.69986 -10.61344 -10.47311 -10.24281 -10.00470 -9.14230 -8.99087 -8.70639 -8.55301 -8.33668 -8.24572 -6.02835 -4.07267 0.83376 0.91968 2.25062 2.90675 3.22529 3.36788 3.39458 3.44289 3.61815 3.77353 3.84561 4.42909 4.46861 4.51632 4.57723 4.84822 4.91659 4.92509 5.00022 5.16438 5.29734 5.35959 5.51666 5.61703 5.69107 5.76166 5.79533 5.87693 5.94805 6.04118 6.07968 6.21021 6.49447 6.62262 6.72551 6.81368 6.94992 6.98891 7.36892 7.76715 7.88148 7.92102 8.06942 8.34075 8.98001 9.16164 9.57579 11.03774 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009711 B = 0.004884 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2882.618026 B = 5731.440633 C = 7616.527541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.033 3.967 3 H 0.049 0.951 4 C -0.499 4.499 5 H 0.068 0.932 6 C 0.060 3.940 7 N -0.893 5.893 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.516 3.484 13 O -0.517 6.517 14 N -0.624 5.624 15 C 0.122 3.878 16 C -0.140 4.140 17 C 0.485 3.515 18 O -0.511 6.511 19 O -0.520 6.520 20 C 0.152 3.848 21 C -0.114 4.114 22 C -0.097 4.097 23 C -0.110 4.110 24 C -0.128 4.128 25 C 0.056 3.944 26 F -0.131 7.131 27 C 0.092 3.908 28 F -0.089 7.089 29 H 0.013 0.987 30 H 0.027 0.973 31 H 0.097 0.903 32 H 0.262 0.738 33 H 0.110 0.890 34 H 0.078 0.922 35 H 0.103 0.897 36 H 0.114 0.886 37 H 0.408 0.592 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.820 2.506 -20.427 20.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.012 3.988 3 H 0.067 0.933 4 C -0.537 4.537 5 H 0.087 0.913 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.202 1.202 12 C 0.308 3.692 13 O -0.390 6.390 14 N -0.359 5.359 15 C -0.002 4.002 16 C -0.178 4.178 17 C 0.326 3.674 18 O -0.399 6.399 19 O -0.332 6.332 20 C 0.029 3.971 21 C -0.117 4.117 22 C -0.116 4.116 23 C -0.128 4.128 24 C -0.147 4.147 25 C 0.036 3.964 26 F -0.109 7.109 27 C 0.071 3.929 28 F -0.067 7.067 29 H 0.032 0.968 30 H 0.046 0.954 31 H 0.115 0.885 32 H 0.072 0.928 33 H 0.128 0.872 34 H 0.097 0.903 35 H 0.121 0.879 36 H 0.132 0.868 37 H 0.266 0.734 38 H 0.114 0.886 39 H 0.107 0.893 40 H 0.155 0.845 41 H 0.155 0.845 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.431 1.682 -20.018 20.235 hybrid contribution -0.191 -0.067 0.987 1.008 sum -2.622 1.615 -19.031 19.278 Atomic orbital electron populations 1.21777 0.96400 0.97576 1.03200 1.18915 0.94105 0.96684 0.89101 0.93317 1.21017 1.31194 1.12505 0.89019 0.91346 1.24926 0.95115 0.95036 0.99054 1.69864 1.36785 1.22892 1.23721 0.86522 0.79225 0.79812 0.81692 1.20208 1.21339 1.20154 1.22170 0.75471 0.87688 0.83897 1.90613 1.49024 1.15487 1.83851 1.48353 1.65833 1.10513 1.11193 1.21393 0.92401 0.82084 1.04319 1.22068 1.00842 0.89873 1.05049 1.23385 0.78390 0.92096 0.73480 1.90745 1.54139 1.53287 1.41700 1.84545 1.37246 1.35049 1.76310 1.20206 0.92233 0.98081 0.86626 1.20473 0.99994 0.94272 0.96920 1.21010 0.97205 0.99873 0.93485 1.20972 0.96140 0.95372 1.00348 1.21053 1.01660 0.97043 0.94926 1.17825 0.95515 0.86907 0.96132 1.91527 1.80794 1.48484 1.90102 1.17812 0.95890 0.94190 0.85016 1.91837 1.89428 1.82134 1.43325 0.96818 0.95379 0.88454 0.92828 0.87244 0.90329 0.87895 0.86773 0.73385 0.88581 0.89349 0.84526 0.84508 0.84125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 9.13 37.16 0.34 -2.76 16 2 C 0.03 0.81 1.91 -92.93 -0.18 0.63 16 3 H 0.05 1.23 6.02 -51.93 -0.31 0.91 16 4 C -0.50 -14.04 8.33 -34.44 -0.29 -14.33 16 5 H 0.07 2.02 7.08 -52.49 -0.37 1.65 16 6 C 0.06 1.65 5.23 -17.82 -0.09 1.56 16 7 N -0.89 -25.08 11.33 55.43 0.63 -24.46 16 8 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 C 0.52 11.39 6.51 -10.99 -0.07 11.31 16 13 O -0.52 -12.88 11.83 5.55 0.07 -12.81 16 14 N -0.62 -10.37 2.47 -175.06 -0.43 -10.80 16 15 C 0.12 1.77 4.73 -4.04 -0.02 1.75 16 16 C -0.14 -1.77 5.58 -27.88 -0.16 -1.92 16 17 C 0.48 6.23 8.33 36.01 0.30 6.53 16 18 O -0.51 -8.06 16.66 -18.75 -0.31 -8.37 16 19 O -0.52 -5.28 13.42 -39.26 -0.53 -5.81 16 20 C 0.15 2.05 5.44 -5.19 -0.03 2.02 16 21 C -0.11 -1.45 4.95 -104.57 -0.52 -1.97 16 22 C -0.10 -0.87 8.05 -39.58 -0.32 -1.19 16 23 C -0.11 -0.90 10.04 -39.58 -0.40 -1.29 16 24 C -0.13 -1.28 10.02 -39.52 -0.40 -1.68 16 25 C 0.06 0.79 7.31 -39.37 -0.29 0.50 16 26 F -0.13 -2.03 17.18 2.25 0.04 -1.99 16 27 C 0.09 1.45 7.20 -39.37 -0.28 1.17 16 28 F -0.09 -1.83 12.81 2.25 0.03 -1.80 16 29 H 0.01 0.27 5.65 -51.93 -0.29 -0.03 16 30 H 0.03 0.66 8.05 -51.93 -0.42 0.24 16 31 H 0.10 2.55 5.82 -51.93 -0.30 2.25 16 32 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.11 1.91 5.31 -51.93 -0.28 1.64 16 34 H 0.08 0.93 8.00 -51.93 -0.42 0.52 16 35 H 0.10 1.05 6.15 -51.93 -0.32 0.73 16 36 H 0.11 1.66 6.05 -51.93 -0.31 1.34 16 37 H 0.41 2.41 9.10 45.56 0.41 2.82 16 38 H 0.10 1.48 7.41 -51.93 -0.38 1.10 16 39 H 0.09 0.85 7.77 -51.93 -0.40 0.45 16 40 H 0.14 0.84 8.00 -52.49 -0.42 0.42 16 41 H 0.14 0.69 8.06 -52.48 -0.42 0.26 16 42 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 354.17 15.07 5.34 5.34 Total: -1.00 -34.53 354.17 -6.39 -40.91 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -3.80 Total: 2.59 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -2.39 Total: 0.34 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 0.19 Total: -35.26 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.77 Total: -26.99 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 0.07 Total: -3.79 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.53 -6.39 -40.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592211226.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.023 kcal (2) G-P(sol) polarization free energy of solvation -34.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds