Wall clock time and date at job start Sat Apr 11 2020 06:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47126 * 2 1 4 4 N 1.46904 * 109.46688 * 240.00352 * 2 1 3 5 5 C 1.46900 * 110.99880 * 85.00502 * 4 2 1 6 6 H 1.09005 * 109.46923 * 324.99138 * 5 4 2 7 7 C 1.53000 * 109.47270 * 84.99727 * 5 4 2 8 8 C 1.50706 * 109.46901 * 204.99485 * 5 4 2 9 9 N 1.29387 * 124.70605 * 314.69981 * 8 5 4 10 10 C 1.30915 * 117.46389 * 179.76234 * 9 8 5 11 11 C 1.36754 * 113.93518 * 0.51493 * 10 9 8 12 12 C 1.46497 * 126.17975 * 179.70703 * 11 10 9 13 13 O 1.21616 * 120.00042 * 180.02562 * 12 11 10 14 14 O 1.34870 * 120.00287 * 0.02605 * 12 11 10 15 15 S 1.70927 * 124.70379 * 134.99564 * 8 5 4 16 16 C 1.50700 * 109.47092 * 120.00550 * 2 1 3 17 17 O 1.21283 * 119.99803 * 119.99700 * 16 2 1 18 18 N 1.34777 * 119.99675 * 300.27576 * 16 2 1 19 19 C 1.46496 * 120.00345 * 359.72090 * 18 16 2 20 20 C 1.46497 * 119.99525 * 179.72583 * 18 16 2 21 21 C 1.50709 * 109.47273 * 89.99834 * 20 18 16 22 22 H 1.07999 * 119.99476 * 359.97438 * 21 20 18 23 23 C 1.37873 * 120.00210 * 179.97438 * 21 20 18 24 24 N 1.31517 * 119.99914 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00074 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46996 * 90.00193 * 25 23 21 27 27 H 1.48502 * 109.46931 * 210.00078 * 25 23 21 28 28 H 1.48498 * 109.47167 * 330.00145 * 25 23 21 29 29 H 1.09004 * 109.47239 * 299.99568 * 1 2 3 30 30 H 1.09005 * 109.47323 * 59.99789 * 1 2 3 31 31 H 1.09006 * 109.47458 * 179.97438 * 1 2 3 32 32 H 1.00893 * 111.00020 * 321.04498 * 4 2 1 33 33 H 1.09005 * 109.46867 * 179.97438 * 7 5 4 34 34 H 1.08997 * 109.46847 * 299.99377 * 7 5 4 35 35 H 1.08993 * 109.47242 * 59.99825 * 7 5 4 36 36 H 1.08005 * 123.03131 * 180.26409 * 10 9 8 37 37 H 0.96704 * 117.00649 * 179.97438 * 14 12 11 38 38 H 1.08997 * 109.47115 * 90.00316 * 19 18 16 39 39 H 1.08995 * 109.47364 * 210.00706 * 19 18 16 40 40 H 1.09002 * 109.47090 * 330.00257 * 19 18 16 41 41 H 1.09000 * 109.46889 * 209.99487 * 20 18 16 42 42 H 1.09001 * 109.47460 * 330.00097 * 20 18 16 43 43 H 0.97000 * 120.00447 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 1 1.2575 0.9331 -2.2906 7 6 3.4111 0.9810 -2.3223 8 6 1.9786 -0.5674 -3.6260 9 7 2.6280 -1.6590 -3.8724 10 6 2.4263 -2.2331 -5.0315 11 6 1.5420 -1.5668 -5.8342 12 6 1.1273 -1.9653 -7.1815 13 8 0.3299 -1.2852 -7.7984 14 8 1.6300 -3.0863 -7.7379 15 16 0.9919 -0.1420 -4.9553 16 6 2.0323 -0.7105 1.2304 17 8 2.7295 -1.6966 1.1190 18 7 1.7021 -0.2534 2.4545 19 6 0.8599 0.9377 2.5891 20 6 2.1855 -0.9476 3.6505 21 6 3.5117 -0.3659 4.0676 22 1 3.9508 0.4401 3.4983 23 6 4.1645 -0.8625 5.1758 24 7 3.6301 -1.8443 5.8687 25 14 5.8087 -0.1420 5.6922 26 1 5.5821 0.9811 6.6370 27 1 6.6223 -1.1915 6.3569 28 1 6.5288 0.3573 4.4933 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.4495 -1.4978 -1.4101 33 1 3.4579 1.6597 -3.1740 34 1 3.4862 1.5525 -1.3972 35 1 4.2359 0.2707 -2.3786 36 1 2.9172 -3.1480 -5.3287 37 1 1.3264 -3.3086 -8.6288 38 1 -0.1883 0.6403 2.6175 39 1 1.1144 1.4604 3.5110 40 1 1.0271 1.5988 1.7387 41 1 1.4644 -0.8242 4.4586 42 1 2.3070 -2.0083 3.4308 43 1 4.0895 -2.1940 6.6481 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593203713.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:11 Heat of formation + Delta-G solvation = -91.880096 kcal Electronic energy + Delta-G solvation = -26928.303563 eV Core-core repulsion = 22907.017856 eV Total energy + Delta-G solvation = -4021.285708 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.46583 -40.96039 -40.50283 -37.90686 -37.16633 -36.49922 -34.84601 -33.69745 -31.36113 -30.05739 -28.80999 -27.57104 -27.32082 -25.71282 -24.39750 -23.84762 -22.77997 -20.86256 -20.21086 -19.38288 -18.90395 -18.63578 -18.00120 -17.51168 -17.25091 -16.93314 -16.48822 -16.41293 -15.92900 -15.79876 -15.58984 -15.10843 -14.64258 -14.56768 -14.45946 -14.28513 -14.14936 -13.53536 -13.37486 -13.24662 -13.19361 -12.93653 -12.88516 -12.75867 -12.71193 -12.69155 -12.52353 -12.32305 -12.19484 -12.15208 -12.10588 -11.66545 -10.74738 -10.69195 -10.61994 -10.44007 -10.09366 -9.41137 -9.27430 -8.19821 -6.34437 -1.08673 -0.12788 0.42192 1.10062 1.36846 1.40595 1.50718 1.83529 1.97434 2.08941 2.30254 2.44482 2.86640 3.09252 3.16883 3.65267 3.73145 3.84624 4.03991 4.11437 4.17883 4.22728 4.30710 4.44277 4.63617 4.74274 4.77042 4.82737 4.89824 4.92746 4.98499 5.05565 5.25137 5.26937 5.34711 5.40359 5.60097 5.83661 5.95380 6.10058 6.24981 6.53912 6.74497 6.82779 6.90543 7.32354 7.63390 8.86846 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021944 B = 0.002215 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.657311 B =12638.002257 C =13035.905280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.082 3.918 3 H 0.126 0.874 4 N -0.668 5.668 5 C 0.162 3.838 6 H 0.104 0.896 7 C -0.137 4.137 8 C 0.048 3.952 9 N -0.489 5.489 10 C 0.136 3.864 11 C -0.328 4.328 12 C 0.577 3.423 13 O -0.544 6.544 14 O -0.496 6.496 15 S 0.285 5.715 16 C 0.498 3.502 17 O -0.583 6.583 18 N -0.612 5.612 19 C 0.076 3.924 20 C 0.261 3.739 21 C -0.538 4.538 22 H 0.053 0.947 23 C 0.005 3.995 24 N -0.930 5.930 25 Si 0.967 3.033 26 H -0.261 1.261 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.049 0.951 32 H 0.347 0.653 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.046 0.954 36 H 0.206 0.794 37 H 0.440 0.560 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.096 0.904 41 H 0.023 0.977 42 H -0.007 1.007 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.794 8.025 -25.773 28.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.032 4.032 3 H 0.143 0.857 4 N -0.301 5.301 5 C 0.050 3.950 6 H 0.122 0.878 7 C -0.196 4.196 8 C -0.225 4.225 9 N -0.203 5.203 10 C -0.026 4.026 11 C -0.451 4.451 12 C 0.420 3.580 13 O -0.437 6.437 14 O -0.310 6.310 15 S 0.545 5.455 16 C 0.286 3.714 17 O -0.462 6.462 18 N -0.345 5.345 19 C -0.066 4.066 20 C 0.139 3.861 21 C -0.577 4.577 22 H 0.071 0.929 23 C -0.194 4.194 24 N -0.570 5.570 25 Si 0.792 3.208 26 H -0.186 1.186 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.113 0.887 30 H 0.115 0.885 31 H 0.068 0.932 32 H 0.167 0.833 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.223 0.777 37 H 0.303 0.697 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.115 0.885 41 H 0.041 0.959 42 H 0.011 0.989 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.206 8.448 -25.076 28.017 hybrid contribution 0.444 -1.372 -0.292 1.471 sum -8.762 7.076 -25.367 27.755 Atomic orbital electron populations 1.22703 0.92533 1.03322 1.05873 1.21469 0.95770 0.98450 0.87468 0.85663 1.60004 1.59353 1.08882 1.01879 1.20404 1.00796 0.91712 0.82130 0.87818 1.21861 0.95099 0.99436 1.03207 1.27901 0.96500 0.96041 1.02020 1.66175 1.24511 1.09505 1.20100 1.23055 0.93305 0.99989 0.86209 1.25152 1.13448 1.05877 1.00613 1.18935 0.76650 0.78269 0.84109 1.90964 1.34433 1.54407 1.63857 1.84531 1.67057 1.40479 1.38940 1.83834 1.37912 1.18958 1.04746 1.21315 0.80062 0.84784 0.85266 1.90648 1.39495 1.29158 1.86888 1.48133 1.50673 1.29676 1.05981 1.22106 0.94179 0.86564 1.03772 1.18693 0.93688 0.91541 0.82151 1.21711 1.06033 1.18833 1.11119 0.92900 1.25876 1.01799 0.95305 0.96426 1.70055 1.40794 1.27160 1.18978 0.85421 0.78785 0.78313 0.78320 1.18624 1.20815 1.19856 0.88725 0.88530 0.93161 0.83285 0.89740 0.91006 0.93522 0.77737 0.69719 0.90721 0.91829 0.88521 0.95906 0.98891 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.31 8.78 71.98 0.63 -2.68 16 2 C 0.08 2.11 2.01 44.17 0.09 2.20 16 3 H 0.13 2.62 6.38 -2.39 -0.02 2.61 16 4 N -0.67 -17.86 5.51 -477.14 -2.63 -20.49 16 5 C 0.16 2.99 2.92 44.17 0.13 3.12 16 6 H 0.10 1.16 7.11 -2.38 -0.02 1.14 16 7 C -0.14 -2.62 9.38 71.98 0.68 -1.95 16 8 C 0.05 0.92 5.89 88.47 0.52 1.44 16 9 N -0.49 -11.37 10.46 -189.53 -1.98 -13.35 16 10 C 0.14 2.53 11.20 84.48 0.95 3.48 16 11 C -0.33 -5.77 6.51 24.08 0.16 -5.62 16 12 C 0.58 9.78 8.30 69.97 0.58 10.36 16 13 O -0.54 -12.05 17.75 19.46 0.35 -11.70 16 14 O -0.50 -5.14 13.23 -57.84 -0.77 -5.91 16 15 S 0.29 4.27 23.00 -56.49 -1.30 2.97 16 16 C 0.50 20.55 7.15 87.66 0.63 21.18 16 17 O -0.58 -31.37 16.01 -3.04 -0.05 -31.42 16 18 N -0.61 -25.46 2.86 -851.14 -2.43 -27.89 16 19 C 0.08 2.08 8.80 127.77 1.12 3.20 16 20 C 0.26 14.23 5.16 85.64 0.44 14.67 16 21 C -0.54 -31.41 9.39 25.60 0.24 -31.17 16 22 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 23 C 0.00 0.27 5.46 84.65 0.46 0.73 16 24 N -0.93 -57.13 13.29 21.45 0.28 -56.85 16 25 Si 0.97 45.58 29.54 68.60 2.03 47.61 16 26 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 27 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 28 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 29 H 0.09 1.51 4.51 -2.38 -0.01 1.49 16 30 H 0.10 1.03 7.43 -2.38 -0.02 1.01 16 31 H 0.05 1.05 8.13 -2.38 -0.02 1.03 16 32 H 0.35 9.65 8.09 -89.70 -0.73 8.92 16 33 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.07 1.37 7.43 -2.39 -0.02 1.35 16 35 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.21 2.97 8.06 -2.91 -0.02 2.95 16 37 H 0.44 0.38 9.11 -74.05 -0.67 -0.29 16 38 H 0.07 1.65 6.94 -2.39 -0.02 1.63 16 39 H 0.06 1.88 8.07 -2.39 -0.02 1.86 16 40 H 0.10 1.88 6.02 -2.39 -0.01 1.86 16 41 H 0.02 1.26 8.07 -2.39 -0.02 1.24 16 42 H -0.01 -0.45 7.42 -2.39 -0.02 -0.47 16 43 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -86.85 379.06 -0.19 -87.05 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -0.32 Total: 11.00 kcal Atomic # 6 Polarization: 12.36 SS G_CDS: 6.62 Total: 18.98 kcal Atomic # 7 Polarization: -111.82 SS G_CDS: -6.76 Total: -118.58 kcal Atomic # 8 Polarization: -48.56 SS G_CDS: -0.47 Total: -49.03 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Atomic # 16 Polarization: 4.27 SS G_CDS: -1.30 Total: 2.97 kcal Total: -86.85 -0.19 -87.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593203713.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.831 kcal (2) G-P(sol) polarization free energy of solvation -86.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds