Wall clock time and date at job start Sat Apr 11 2020 06:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46707 * 2 1 4 4 N 1.46896 * 109.46774 * 119.99472 * 2 1 3 5 5 C 1.46900 * 111.00327 * 275.00043 * 4 2 1 6 6 H 1.08996 * 109.47200 * 34.99995 * 5 4 2 7 7 C 1.53004 * 109.47104 * 275.00120 * 5 4 2 8 8 C 1.50695 * 109.47075 * 155.00745 * 5 4 2 9 9 N 1.29396 * 124.71394 * 45.02177 * 8 5 4 10 10 C 1.30905 * 117.47146 * 179.97438 * 9 8 5 11 11 C 1.36762 * 113.93404 * 359.97438 * 10 9 8 12 12 C 1.46500 * 126.17860 * 179.97438 * 11 10 9 13 13 O 1.21611 * 120.00027 * 180.02562 * 12 11 10 14 14 O 1.34877 * 120.00205 * 0.03332 * 12 11 10 15 15 S 1.70925 * 124.70313 * 224.72194 * 8 5 4 16 16 C 1.50696 * 109.47110 * 239.99891 * 2 1 3 17 17 O 1.21289 * 119.99762 * 240.00032 * 16 2 1 18 18 N 1.34774 * 120.00038 * 59.99820 * 16 2 1 19 19 C 1.46498 * 120.00377 * 0.02562 * 18 16 2 20 20 C 1.46506 * 119.99868 * 180.02562 * 18 16 2 21 21 C 1.50703 * 109.47289 * 89.99907 * 20 18 16 22 22 H 1.07994 * 119.99399 * 0.02562 * 21 20 18 23 23 C 1.37874 * 119.99789 * 179.97438 * 21 20 18 24 24 N 1.31512 * 119.99734 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 120.00111 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47123 * 89.99915 * 25 23 21 27 27 H 1.48498 * 109.47161 * 209.99603 * 25 23 21 28 28 H 1.48497 * 109.47329 * 329.99749 * 25 23 21 29 29 H 1.09002 * 109.47131 * 300.00355 * 1 2 3 30 30 H 1.08997 * 109.47467 * 60.00223 * 1 2 3 31 31 H 1.09004 * 109.47390 * 180.02562 * 1 2 3 32 32 H 1.00906 * 110.99759 * 151.05029 * 4 2 1 33 33 H 1.08997 * 109.47292 * 180.02562 * 7 5 4 34 34 H 1.09001 * 109.46939 * 300.00479 * 7 5 4 35 35 H 1.08999 * 109.46851 * 59.99794 * 7 5 4 36 36 H 1.08005 * 123.03666 * 179.97438 * 10 9 8 37 37 H 0.96702 * 116.99972 * 179.97438 * 14 12 11 38 38 H 1.08999 * 109.46923 * 270.00446 * 19 18 16 39 39 H 1.08997 * 109.46694 * 29.99578 * 19 18 16 40 40 H 1.08995 * 109.47258 * 149.99854 * 19 18 16 41 41 H 1.09001 * 109.47060 * 210.00357 * 20 18 16 42 42 H 1.09004 * 109.47073 * 329.99846 * 20 18 16 43 43 H 0.97007 * 120.00011 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0823 0.2227 2.3469 6 1 1.2576 0.9331 2.2907 7 6 3.4110 0.9810 2.3224 8 6 1.9786 -0.5674 3.6259 9 7 2.6243 -1.6618 3.8703 10 6 2.4272 -2.2326 5.0318 11 6 1.5432 -1.5661 5.8347 12 6 1.1284 -1.9648 7.1820 13 8 0.3306 -1.2850 7.7987 14 8 1.6313 -3.0858 7.7385 15 16 0.9971 -0.1384 4.9579 16 6 2.0323 -0.7104 -1.2304 17 8 2.7296 -1.6966 -1.1191 18 7 1.7067 -0.2500 -2.4545 19 6 0.8649 0.9414 -2.5890 20 6 2.1946 -0.9410 -3.6507 21 6 1.2015 -1.9979 -4.0605 22 1 0.2972 -2.1402 -3.4876 23 6 1.4470 -2.7822 -5.1676 24 7 0.5806 -3.7048 -5.5249 25 14 3.0109 -2.5354 -6.1589 26 1 4.0849 -3.4039 -5.6136 27 1 2.7587 -2.8921 -7.5782 28 1 3.4323 -1.1140 -6.0731 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 2.9173 -1.1204 1.0288 33 1 3.4578 1.6597 3.1740 34 1 4.2358 0.2706 2.3786 35 1 3.4862 1.5525 1.3973 36 1 2.9183 -3.1474 5.3292 37 1 1.3280 -3.3078 8.6294 38 1 -0.1832 0.6438 -2.6221 39 1 1.0288 1.6001 -1.7363 40 1 1.1228 1.4665 -3.5087 41 1 2.3159 -0.2225 -4.4613 42 1 3.1547 -1.4093 -3.4336 43 1 0.7535 -4.2569 -6.3036 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593203714.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:14 Heat of formation + Delta-G solvation = -61.737498 kcal Electronic energy + Delta-G solvation = -26976.983947 eV Core-core repulsion = 22957.005320 eV Total energy + Delta-G solvation = -4019.978626 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.65221 -39.98281 -39.46033 -36.87743 -36.45916 -35.06604 -33.10702 -32.28676 -30.57089 -28.88047 -27.82586 -26.69101 -26.23614 -24.09338 -23.45973 -22.60843 -21.49950 -20.01373 -19.04856 -18.46300 -17.92619 -17.14561 -16.96233 -16.48550 -16.22939 -16.15624 -15.17730 -14.96320 -14.94613 -14.46723 -14.36920 -14.09756 -13.95855 -13.74756 -13.26767 -12.96004 -12.75325 -12.50431 -12.32912 -12.22900 -12.06454 -12.01388 -11.93498 -11.73201 -11.65464 -11.40384 -11.31255 -11.26459 -10.83536 -10.54942 -10.15063 -9.93463 -9.85864 -9.55573 -9.31003 -9.03799 -8.59796 -8.55491 -7.76628 -6.08990 -4.07883 -0.23591 0.66245 1.25368 1.92034 2.65335 2.76012 3.20705 3.27972 3.33703 3.35710 3.61740 3.73997 4.13762 4.38598 4.45777 4.61567 4.69586 4.81867 4.87940 4.99969 5.05783 5.23264 5.26086 5.30033 5.41769 5.48292 5.67537 5.77631 5.80029 5.81617 5.84649 5.98764 6.09246 6.38589 6.59096 6.79000 6.91352 7.26076 7.31656 7.35653 7.44246 7.59309 8.16264 8.45380 8.85995 8.95551 9.50762 11.04436 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.020327 B = 0.002281 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.130738 B =12274.155433 C =12738.092470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.069 3.931 3 H 0.067 0.933 4 N -0.655 5.655 5 C 0.155 3.845 6 H 0.103 0.897 7 C -0.179 4.179 8 C 0.086 3.914 9 N -0.465 5.465 10 C 0.141 3.859 11 C -0.320 4.320 12 C 0.571 3.429 13 O -0.516 6.516 14 O -0.505 6.505 15 S 0.235 5.765 16 C 0.507 3.493 17 O -0.530 6.530 18 N -0.594 5.594 19 C 0.082 3.918 20 C 0.216 3.784 21 C -0.528 4.528 22 H 0.075 0.925 23 C 0.072 3.928 24 N -0.897 5.897 25 Si 0.877 3.123 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.267 1.267 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.369 0.631 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.191 0.809 37 H 0.419 0.581 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.030 0.970 42 H 0.036 0.964 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.294 12.317 22.778 25.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.044 4.044 3 H 0.085 0.915 4 N -0.292 5.292 5 C 0.040 3.960 6 H 0.121 0.879 7 C -0.239 4.239 8 C -0.189 4.189 9 N -0.178 5.178 10 C -0.020 4.020 11 C -0.442 4.442 12 C 0.413 3.587 13 O -0.406 6.406 14 O -0.317 6.317 15 S 0.495 5.505 16 C 0.292 3.708 17 O -0.406 6.406 18 N -0.326 5.326 19 C -0.061 4.061 20 C 0.096 3.904 21 C -0.566 4.566 22 H 0.093 0.907 23 C -0.131 4.131 24 N -0.535 5.535 25 Si 0.704 3.296 26 H -0.199 1.199 27 H -0.211 1.211 28 H -0.191 1.191 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.194 0.806 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.208 0.792 37 H 0.278 0.722 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.048 0.952 42 H 0.054 0.946 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.579 12.357 22.365 25.600 hybrid contribution 1.571 -0.609 0.034 1.685 sum 3.150 11.748 22.399 25.488 Atomic orbital electron populations 1.22027 0.92398 1.04034 1.02266 1.21471 0.97636 0.96223 0.89114 0.91544 1.60242 1.36808 1.30126 1.02036 1.20197 0.98957 0.91152 0.85656 0.87920 1.22530 0.97199 1.01123 1.03061 1.27715 0.95250 0.95497 1.00393 1.66079 1.24755 1.08208 1.18750 1.22796 0.93141 0.99414 0.86654 1.24844 1.13477 1.05596 1.00280 1.19002 0.77263 0.78012 0.84380 1.90966 1.33046 1.53373 1.63200 1.84566 1.67700 1.42094 1.37360 1.83997 1.40302 1.19934 1.06292 1.20196 0.81218 0.84987 0.84362 1.90685 1.38548 1.25565 1.85787 1.47762 1.50093 1.28135 1.06633 1.21834 0.95522 0.87224 1.01568 1.19701 0.96285 0.92839 0.81612 1.21304 1.06660 1.16709 1.11977 0.90716 1.24863 0.96461 0.94643 0.97084 1.69898 1.35711 1.21335 1.26555 0.86848 0.84164 0.79087 0.79543 1.19907 1.21074 1.19147 0.92444 0.90476 0.91084 0.80636 0.91543 0.90899 0.90973 0.79226 0.72200 0.92261 0.92237 0.91402 0.95188 0.94579 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.03 37.16 0.34 -1.53 16 2 C 0.07 0.94 2.03 -68.87 -0.14 0.80 16 3 H 0.07 0.71 6.37 -51.93 -0.33 0.38 16 4 N -0.66 -8.96 5.88 -102.18 -0.60 -9.56 16 5 C 0.15 1.53 2.89 -68.86 -0.20 1.33 16 6 H 0.10 0.80 7.11 -51.93 -0.37 0.43 16 7 C -0.18 -1.48 9.13 37.16 0.34 -1.14 16 8 C 0.09 0.92 6.24 -13.31 -0.08 0.84 16 9 N -0.46 -5.66 10.45 -11.26 -0.12 -5.78 16 10 C 0.14 1.47 11.20 -18.48 -0.21 1.26 16 11 C -0.32 -3.29 6.51 -36.79 -0.24 -3.53 16 12 C 0.57 5.68 8.30 34.06 0.28 5.96 16 13 O -0.52 -6.42 17.75 -19.35 -0.34 -6.77 16 14 O -0.51 -3.40 13.23 -40.98 -0.54 -3.94 16 15 S 0.23 2.20 23.00 -107.50 -2.47 -0.27 16 16 C 0.51 9.81 7.10 -10.99 -0.08 9.74 16 17 O -0.53 -12.63 15.23 5.55 0.08 -12.54 16 18 N -0.59 -11.64 2.86 -182.95 -0.52 -12.16 16 19 C 0.08 1.16 8.85 59.85 0.53 1.69 16 20 C 0.22 5.17 4.27 -5.19 -0.02 5.15 16 21 C -0.53 -15.05 9.94 -34.44 -0.34 -15.39 16 22 H 0.07 2.35 8.06 -52.49 -0.42 1.92 16 23 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 24 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 25 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16 26 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 29 H 0.06 0.56 7.43 -51.93 -0.39 0.17 16 30 H 0.08 0.90 4.53 -51.93 -0.24 0.66 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.37 5.79 7.19 -39.29 -0.28 5.51 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 35 H 0.07 0.56 7.43 -51.93 -0.39 0.17 16 36 H 0.19 1.54 8.06 -52.48 -0.42 1.12 16 37 H 0.42 0.86 9.11 45.56 0.42 1.27 16 38 H 0.06 0.84 6.95 -51.93 -0.36 0.47 16 39 H 0.06 0.61 6.01 -51.93 -0.31 0.30 16 40 H 0.07 0.89 7.89 -51.93 -0.41 0.48 16 41 H 0.03 0.68 6.95 -51.93 -0.36 0.32 16 42 H 0.04 0.92 6.85 -51.93 -0.36 0.57 16 43 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 374.21 15.07 5.64 5.64 Total: -1.00 -37.48 374.21 -7.35 -44.83 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -4.65 Total: 3.52 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: 0.08 Total: 7.16 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: -0.47 Total: -54.38 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.80 Total: -23.26 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -2.47 Total: -0.27 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -37.48 -7.35 -44.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593203714.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.909 kcal (2) G-P(sol) polarization free energy of solvation -37.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds