Wall clock time and date at job start Sat Apr 11 2020 06:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46707 * 2 1 4 4 N 1.46896 * 109.46774 * 119.99472 * 2 1 3 5 5 C 1.46900 * 111.00327 * 275.00043 * 4 2 1 6 6 H 1.08996 * 109.47200 * 34.99995 * 5 4 2 7 7 C 1.53004 * 109.47104 * 275.00120 * 5 4 2 8 8 C 1.50695 * 109.47075 * 155.00745 * 5 4 2 9 9 N 1.29396 * 124.71394 * 45.02177 * 8 5 4 10 10 C 1.30905 * 117.47146 * 179.97438 * 9 8 5 11 11 C 1.36762 * 113.93404 * 359.97438 * 10 9 8 12 12 C 1.46500 * 126.17860 * 179.97438 * 11 10 9 13 13 O 1.21611 * 120.00027 * 180.02562 * 12 11 10 14 14 O 1.34877 * 120.00205 * 0.03332 * 12 11 10 15 15 S 1.70925 * 124.70313 * 224.72194 * 8 5 4 16 16 C 1.50696 * 109.47110 * 239.99891 * 2 1 3 17 17 O 1.21289 * 119.99762 * 240.00032 * 16 2 1 18 18 N 1.34774 * 120.00038 * 59.99820 * 16 2 1 19 19 C 1.46498 * 120.00377 * 0.02562 * 18 16 2 20 20 C 1.46506 * 119.99868 * 180.02562 * 18 16 2 21 21 C 1.50703 * 109.47289 * 89.99907 * 20 18 16 22 22 H 1.07994 * 119.99399 * 0.02562 * 21 20 18 23 23 C 1.37874 * 119.99789 * 179.97438 * 21 20 18 24 24 N 1.31512 * 119.99734 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 120.00111 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47123 * 89.99915 * 25 23 21 27 27 H 1.48498 * 109.47161 * 209.99603 * 25 23 21 28 28 H 1.48497 * 109.47329 * 329.99749 * 25 23 21 29 29 H 1.09002 * 109.47131 * 300.00355 * 1 2 3 30 30 H 1.08997 * 109.47467 * 60.00223 * 1 2 3 31 31 H 1.09004 * 109.47390 * 180.02562 * 1 2 3 32 32 H 1.00906 * 110.99759 * 151.05029 * 4 2 1 33 33 H 1.08997 * 109.47292 * 180.02562 * 7 5 4 34 34 H 1.09001 * 109.46939 * 300.00479 * 7 5 4 35 35 H 1.08999 * 109.46851 * 59.99794 * 7 5 4 36 36 H 1.08005 * 123.03666 * 179.97438 * 10 9 8 37 37 H 0.96702 * 116.99972 * 179.97438 * 14 12 11 38 38 H 1.08999 * 109.46923 * 270.00446 * 19 18 16 39 39 H 1.08997 * 109.46694 * 29.99578 * 19 18 16 40 40 H 1.08995 * 109.47258 * 149.99854 * 19 18 16 41 41 H 1.09001 * 109.47060 * 210.00357 * 20 18 16 42 42 H 1.09004 * 109.47073 * 329.99846 * 20 18 16 43 43 H 0.97007 * 120.00011 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0823 0.2227 2.3469 6 1 1.2576 0.9331 2.2907 7 6 3.4110 0.9810 2.3224 8 6 1.9786 -0.5674 3.6259 9 7 2.6243 -1.6618 3.8703 10 6 2.4272 -2.2326 5.0318 11 6 1.5432 -1.5661 5.8347 12 6 1.1284 -1.9648 7.1820 13 8 0.3306 -1.2850 7.7987 14 8 1.6313 -3.0858 7.7385 15 16 0.9971 -0.1384 4.9579 16 6 2.0323 -0.7104 -1.2304 17 8 2.7296 -1.6966 -1.1191 18 7 1.7067 -0.2500 -2.4545 19 6 0.8649 0.9414 -2.5890 20 6 2.1946 -0.9410 -3.6507 21 6 1.2015 -1.9979 -4.0605 22 1 0.2972 -2.1402 -3.4876 23 6 1.4470 -2.7822 -5.1676 24 7 0.5806 -3.7048 -5.5249 25 14 3.0109 -2.5354 -6.1589 26 1 4.0849 -3.4039 -5.6136 27 1 2.7587 -2.8921 -7.5782 28 1 3.4323 -1.1140 -6.0731 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 2.9173 -1.1204 1.0288 33 1 3.4578 1.6597 3.1740 34 1 4.2358 0.2706 2.3786 35 1 3.4862 1.5525 1.3973 36 1 2.9183 -3.1474 5.3292 37 1 1.3280 -3.3078 8.6294 38 1 -0.1832 0.6438 -2.6221 39 1 1.0288 1.6001 -1.7363 40 1 1.1228 1.4665 -3.5087 41 1 2.3159 -0.2225 -4.4613 42 1 3.1547 -1.4093 -3.4336 43 1 0.7535 -4.2569 -6.3036 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593203714.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:13 Heat of formation + Delta-G solvation = -92.614613 kcal Electronic energy + Delta-G solvation = -26978.322879 eV Core-core repulsion = 22957.005320 eV Total energy + Delta-G solvation = -4021.317559 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.42863 -41.09932 -40.50180 -37.90815 -37.15096 -36.67375 -34.83220 -33.70614 -31.45578 -30.39842 -29.03542 -27.60021 -27.37685 -25.47738 -24.36774 -23.73648 -22.71274 -20.78744 -20.26213 -19.36294 -19.13739 -18.83973 -17.98481 -17.56941 -17.48187 -16.90927 -16.73479 -16.05247 -15.89244 -15.81012 -15.54738 -15.18935 -14.93477 -14.64826 -14.50991 -14.20749 -14.01860 -13.82577 -13.64578 -13.32433 -13.22094 -13.01384 -12.93722 -12.77025 -12.70361 -12.68122 -12.45488 -12.26397 -12.18140 -12.12416 -11.93257 -11.73789 -10.82704 -10.75422 -10.64334 -10.55042 -10.05333 -9.50952 -9.37638 -8.33068 -6.38042 -1.00459 -0.06310 0.49059 1.14767 1.32743 1.37559 1.45410 1.74614 1.87849 2.11997 2.28646 2.31650 2.99049 3.01440 3.12847 3.60000 3.71861 3.89391 3.97591 4.09768 4.15977 4.25292 4.33465 4.42622 4.60876 4.70417 4.74416 4.77064 4.82014 4.88487 4.95868 4.97571 5.03538 5.19837 5.36720 5.41659 5.46625 5.60687 5.88312 6.21679 6.24633 6.58039 6.63636 6.70501 6.84411 7.21944 7.40251 8.84124 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.020327 B = 0.002281 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.130738 B =12274.155433 C =12738.092470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.083 3.917 3 H 0.112 0.888 4 N -0.675 5.675 5 C 0.153 3.847 6 H 0.132 0.868 7 C -0.173 4.173 8 C 0.074 3.926 9 N -0.498 5.498 10 C 0.138 3.862 11 C -0.336 4.336 12 C 0.577 3.423 13 O -0.546 6.546 14 O -0.496 6.496 15 S 0.273 5.727 16 C 0.495 3.505 17 O -0.587 6.587 18 N -0.602 5.602 19 C 0.073 3.927 20 C 0.223 3.777 21 C -0.534 4.534 22 H 0.026 0.974 23 C 0.008 3.992 24 N -0.947 5.947 25 Si 0.950 3.050 26 H -0.279 1.279 27 H -0.276 1.276 28 H -0.234 1.234 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.031 0.969 32 H 0.355 0.645 33 H 0.087 0.913 34 H 0.052 0.948 35 H 0.083 0.917 36 H 0.204 0.796 37 H 0.439 0.561 38 H 0.055 0.945 39 H 0.107 0.893 40 H 0.080 0.920 41 H 0.054 0.946 42 H 0.018 0.982 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.956 15.440 23.558 28.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.029 4.029 3 H 0.129 0.871 4 N -0.311 5.311 5 C 0.040 3.960 6 H 0.150 0.850 7 C -0.234 4.234 8 C -0.200 4.200 9 N -0.212 5.212 10 C -0.024 4.024 11 C -0.459 4.459 12 C 0.421 3.579 13 O -0.438 6.438 14 O -0.311 6.311 15 S 0.533 5.467 16 C 0.283 3.717 17 O -0.467 6.467 18 N -0.333 5.333 19 C -0.068 4.068 20 C 0.100 3.900 21 C -0.572 4.572 22 H 0.044 0.956 23 C -0.190 4.190 24 N -0.588 5.588 25 Si 0.772 3.228 26 H -0.205 1.205 27 H -0.201 1.201 28 H -0.157 1.157 29 H 0.113 0.887 30 H 0.106 0.894 31 H 0.051 0.949 32 H 0.177 0.823 33 H 0.106 0.894 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.221 0.779 37 H 0.302 0.698 38 H 0.074 0.926 39 H 0.125 0.875 40 H 0.099 0.901 41 H 0.072 0.928 42 H 0.036 0.964 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.206 15.533 23.181 27.991 hybrid contribution 1.278 -1.655 -0.089 2.093 sum 3.484 13.878 23.093 27.166 Atomic orbital electron populations 1.22054 0.91411 1.02276 1.04670 1.21462 0.98008 0.97299 0.86175 0.87104 1.60229 1.36131 1.31751 1.03006 1.20439 1.00933 0.90853 0.83815 0.85021 1.22483 0.95474 1.00834 1.04564 1.27930 0.95365 0.95415 1.01242 1.66105 1.25987 1.09330 1.19744 1.23009 0.93223 0.99864 0.86269 1.25069 1.13772 1.06279 1.00735 1.18956 0.76643 0.78215 0.84128 1.90954 1.34486 1.54499 1.63908 1.84532 1.67094 1.40561 1.38880 1.83779 1.38954 1.18998 1.04942 1.21322 0.80051 0.84518 0.85828 1.90648 1.41064 1.28263 1.86764 1.47866 1.50595 1.29296 1.05566 1.22193 0.94341 0.85788 1.04529 1.19372 0.94057 0.92399 0.84144 1.21561 1.06011 1.18282 1.11386 0.95567 1.25896 1.00398 0.94156 0.98563 1.70063 1.38301 1.22808 1.27586 0.85689 0.78735 0.80705 0.77629 1.20453 1.20133 1.15695 0.88692 0.89381 0.94950 0.82295 0.89429 0.92849 0.89858 0.77898 0.69804 0.92618 0.87452 0.90110 0.92802 0.96439 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 9.03 71.98 0.65 -2.67 16 2 C 0.08 2.08 2.03 44.17 0.09 2.17 16 3 H 0.11 1.82 6.37 -2.39 -0.02 1.80 16 4 N -0.68 -17.77 5.88 -477.18 -2.81 -20.58 16 5 C 0.15 2.66 2.89 44.17 0.13 2.78 16 6 H 0.13 1.47 7.11 -2.39 -0.02 1.46 16 7 C -0.17 -2.43 9.13 71.98 0.66 -1.77 16 8 C 0.07 1.48 6.24 88.47 0.55 2.04 16 9 N -0.50 -11.95 10.45 -189.53 -1.98 -13.93 16 10 C 0.14 2.79 11.20 84.48 0.95 3.74 16 11 C -0.34 -6.58 6.51 24.08 0.16 -6.42 16 12 C 0.58 10.87 8.30 69.97 0.58 11.45 16 13 O -0.55 -13.09 17.75 19.47 0.35 -12.75 16 14 O -0.50 -5.97 13.23 -57.91 -0.77 -6.74 16 15 S 0.27 4.61 23.00 -56.49 -1.30 3.31 16 16 C 0.49 19.06 7.10 87.66 0.62 19.69 16 17 O -0.59 -29.03 15.23 -3.06 -0.05 -29.08 16 18 N -0.60 -23.07 2.86 -851.12 -2.43 -25.50 16 19 C 0.07 1.85 8.85 127.77 1.13 2.98 16 20 C 0.22 10.61 4.27 85.63 0.37 10.97 16 21 C -0.53 -31.41 9.94 25.60 0.25 -31.15 16 22 H 0.03 1.74 8.06 -2.91 -0.02 1.71 16 23 C 0.01 0.45 5.47 84.65 0.46 0.91 16 24 N -0.95 -60.50 13.96 21.45 0.30 -60.20 16 25 Si 0.95 44.39 27.47 68.60 1.88 46.28 16 26 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 27 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 28 H -0.23 -9.62 6.54 99.48 0.65 -8.97 16 29 H 0.09 1.45 7.43 -2.39 -0.02 1.43 16 30 H 0.09 1.79 4.53 -2.39 -0.01 1.78 16 31 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.35 11.30 7.19 -89.69 -0.64 10.65 16 33 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.05 0.97 8.13 -2.39 -0.02 0.95 16 35 H 0.08 0.98 7.43 -2.39 -0.02 0.96 16 36 H 0.20 3.23 8.06 -2.91 -0.02 3.21 16 37 H 0.44 1.06 9.11 -74.06 -0.67 0.38 16 38 H 0.06 1.46 6.95 -2.39 -0.02 1.45 16 39 H 0.11 1.67 6.01 -2.39 -0.01 1.66 16 40 H 0.08 1.85 7.89 -2.39 -0.02 1.83 16 41 H 0.05 2.31 6.95 -2.39 -0.02 2.29 16 42 H 0.02 0.90 6.85 -2.38 -0.02 0.89 16 43 H 0.27 15.88 8.31 -92.70 -0.77 15.11 16 Total: -1.00 -87.79 374.21 -0.50 -88.29 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -0.29 Total: 16.19 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: 6.60 Total: 14.71 kcal Atomic # 7 Polarization: -113.29 SS G_CDS: -6.92 Total: -120.21 kcal Atomic # 8 Polarization: -48.10 SS G_CDS: -0.47 Total: -48.57 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.88 Total: 46.28 kcal Atomic # 16 Polarization: 4.61 SS G_CDS: -1.30 Total: 3.31 kcal Total: -87.79 -0.50 -88.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593203714.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.322 kcal (2) G-P(sol) polarization free energy of solvation -87.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds