Wall clock time and date at job start Sat Apr 11 2020 06:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47333 * 2 1 4 4 N 1.46897 * 109.47057 * 239.99978 * 2 1 3 5 5 C 1.46901 * 110.99970 * 84.99606 * 4 2 1 6 6 H 1.08992 * 109.47593 * 325.00475 * 5 4 2 7 7 C 1.52999 * 109.47212 * 204.99650 * 5 4 2 8 8 C 1.50703 * 109.47028 * 65.00571 * 7 5 4 9 9 C 1.33638 * 126.04043 * 89.70701 * 8 7 5 10 10 N 1.31784 * 114.50058 * 179.79153 * 9 8 7 11 11 C 1.29020 * 117.12541 * 0.52464 * 10 9 8 12 12 S 1.70975 * 110.16605 * 359.71459 * 11 10 9 13 13 C 1.50704 * 109.46876 * 85.00150 * 5 4 2 14 14 O 1.20820 * 119.99942 * 0.02562 * 13 5 4 15 15 O 1.34233 * 120.00040 * 179.97438 * 13 5 4 16 16 C 1.50702 * 109.47134 * 120.00039 * 2 1 3 17 17 O 1.21283 * 119.99575 * 120.00304 * 16 2 1 18 18 N 1.34771 * 120.00335 * 299.99763 * 16 2 1 19 19 C 1.46506 * 119.99594 * 0.02562 * 18 16 2 20 20 C 1.46501 * 120.00308 * 180.02562 * 18 16 2 21 21 C 1.50700 * 109.46743 * 269.99953 * 20 18 16 22 22 H 1.07996 * 120.00425 * 0.02562 * 21 20 18 23 23 C 1.37879 * 119.99720 * 179.97438 * 21 20 18 24 24 N 1.31521 * 119.99959 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99952 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47139 * 60.00228 * 25 23 21 27 27 H 1.48508 * 109.46701 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47104 * 299.99875 * 25 23 21 29 29 H 1.08999 * 109.46772 * 299.99376 * 1 2 3 30 30 H 1.08996 * 109.47066 * 60.00177 * 1 2 3 31 31 H 1.09002 * 109.46863 * 180.02562 * 1 2 3 32 32 H 1.00900 * 111.00450 * 208.95288 * 4 2 1 33 33 H 1.09003 * 109.47122 * 184.99870 * 7 5 4 34 34 H 1.09000 * 109.47637 * 305.00306 * 7 5 4 35 35 H 1.07999 * 122.74746 * 359.97438 * 9 8 7 36 36 H 1.07996 * 124.91960 * 179.74942 * 11 10 9 37 37 H 0.96698 * 117.00234 * 179.97438 * 15 13 5 38 38 H 1.09001 * 109.47060 * 90.00388 * 19 18 16 39 39 H 1.09004 * 109.47073 * 209.99877 * 19 18 16 40 40 H 1.09000 * 109.47212 * 329.99960 * 19 18 16 41 41 H 1.09000 * 109.46877 * 29.99967 * 20 18 16 42 42 H 1.09000 * 109.47251 * 150.00072 * 20 18 16 43 43 H 0.96994 * 119.99936 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0823 0.2226 -2.3469 6 1 1.2576 0.9329 -2.2907 7 6 1.9770 -0.5797 -3.6454 8 6 0.6190 -1.2281 -3.7264 9 6 -0.4771 -0.6919 -4.2714 10 7 -1.5450 -1.4626 -4.2221 11 6 -1.4133 -2.6147 -3.6565 12 16 0.1940 -2.8240 -3.1123 13 6 3.3910 0.9695 -2.3228 14 8 4.1897 0.7606 -1.4406 15 8 3.6698 1.8662 -3.2820 16 6 2.0323 -0.7104 1.2305 17 8 2.7297 -1.6965 1.1191 18 7 1.7068 -0.2500 2.4546 19 6 0.8641 0.9408 2.5890 20 6 2.1956 -0.9403 3.6507 21 6 1.2034 -1.9977 4.0611 22 1 0.2994 -2.1415 3.4880 23 6 1.4503 -2.7824 5.1677 24 7 2.5514 -2.6076 5.8653 25 14 0.2207 -4.0936 5.6760 26 1 0.0561 -5.0725 4.5716 27 1 0.7168 -4.7940 6.8879 28 1 -1.0877 -3.4569 5.9723 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.9173 -1.1205 -1.0288 33 1 2.1123 0.0874 -4.4967 34 1 2.7486 -1.3494 -3.6606 35 1 -0.4862 0.2911 -4.7185 36 1 -2.2037 -3.3419 -3.5437 37 1 4.5215 2.3205 -3.2241 38 1 -0.1837 0.6425 2.6226 39 1 1.1219 1.4665 3.5085 40 1 1.0273 1.5996 1.7360 41 1 3.1560 -1.4079 3.4334 42 1 2.3166 -0.2215 4.4611 43 1 2.7249 -3.1593 6.6439 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593211333.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:17 Heat of formation + Delta-G solvation = -66.281951 kcal Electronic energy + Delta-G solvation = -28183.005328 eV Core-core repulsion = 24162.829640 eV Total energy + Delta-G solvation = -4020.175689 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.87671 -39.60423 -39.30952 -36.85767 -36.07399 -34.91126 -33.56331 -32.50503 -30.42859 -28.22006 -27.43045 -26.17733 -25.88342 -23.85387 -23.81851 -22.06663 -20.92976 -20.00833 -18.90444 -18.29115 -18.10410 -17.31806 -16.55943 -16.43172 -16.14748 -15.76343 -15.45898 -14.86284 -14.54638 -14.44761 -14.32297 -13.97279 -13.95101 -13.74165 -13.35952 -12.80416 -12.70164 -12.53008 -12.28898 -12.20631 -12.01566 -11.81031 -11.71006 -11.51751 -11.28268 -11.16939 -11.12965 -10.91547 -10.84606 -10.54648 -10.14228 -9.64713 -9.63686 -9.22116 -9.06463 -8.88436 -8.74155 -8.41943 -7.66228 -6.03052 -4.07679 0.66124 1.39037 1.81632 1.89165 2.68301 2.82700 3.32212 3.33982 3.37309 3.42419 3.63764 4.10245 4.29878 4.45916 4.53789 4.60443 4.74782 4.94736 4.99414 5.13125 5.18374 5.20861 5.31436 5.31953 5.43257 5.56563 5.64188 5.78111 5.82815 5.91050 6.08051 6.12680 6.19941 6.36940 6.61661 7.05241 7.19817 7.43756 7.52789 7.58440 7.65399 7.92787 8.23906 8.37908 8.89537 9.05693 9.57100 11.05134 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011290 B = 0.003629 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.466191 B = 7714.759132 C = 9300.567220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.067 3.933 3 H 0.063 0.937 4 N -0.638 5.638 5 C 0.100 3.900 6 H 0.121 0.879 7 C -0.024 4.024 8 C -0.204 4.204 9 C 0.024 3.976 10 N -0.476 5.476 11 C -0.006 4.006 12 S 0.182 5.818 13 C 0.444 3.556 14 O -0.502 6.502 15 O -0.517 6.517 16 C 0.509 3.491 17 O -0.530 6.530 18 N -0.599 5.599 19 C 0.083 3.917 20 C 0.247 3.753 21 C -0.525 4.525 22 H 0.057 0.943 23 C 0.061 3.939 24 N -0.896 5.896 25 Si 0.898 3.102 26 H -0.276 1.276 27 H -0.286 1.286 28 H -0.277 1.277 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.370 0.630 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.170 0.830 36 H 0.193 0.807 37 H 0.407 0.593 38 H 0.055 0.945 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.043 0.957 42 H 0.032 0.968 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.754 8.879 -21.518 23.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.046 4.046 3 H 0.081 0.919 4 N -0.275 5.275 5 C -0.014 4.014 6 H 0.138 0.862 7 C -0.064 4.064 8 C -0.326 4.326 9 C -0.128 4.128 10 N -0.189 5.189 11 C -0.302 4.302 12 S 0.436 5.564 13 C 0.283 3.717 14 O -0.388 6.388 15 O -0.328 6.328 16 C 0.294 3.706 17 O -0.407 6.407 18 N -0.331 5.331 19 C -0.061 4.061 20 C 0.128 3.872 21 C -0.564 4.564 22 H 0.075 0.925 23 C -0.141 4.141 24 N -0.535 5.535 25 Si 0.726 3.274 26 H -0.201 1.201 27 H -0.212 1.212 28 H -0.203 1.203 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.196 0.804 33 H 0.120 0.880 34 H 0.103 0.897 35 H 0.187 0.813 36 H 0.210 0.790 37 H 0.266 0.734 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.050 0.950 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.066 7.044 -20.995 22.515 hybrid contribution 0.555 1.035 0.444 1.255 sum -3.511 8.079 -20.551 22.360 Atomic orbital electron populations 1.22004 0.92373 1.03794 1.02260 1.21491 0.97262 0.96339 0.89529 0.91894 1.60850 1.35831 1.27799 1.03013 1.21664 0.91681 0.93755 0.94291 0.86152 1.19920 0.92184 0.98903 0.95421 1.25587 1.00569 0.99246 1.07177 1.21671 0.86766 1.01261 1.03136 1.66320 1.31092 1.03991 1.17523 1.28365 1.01480 0.98717 1.01686 1.84476 1.05774 1.14061 1.52066 1.25057 0.90389 0.77587 0.78631 1.90824 1.48926 1.63169 1.35883 1.84562 1.44019 1.52836 1.51386 1.20048 0.81209 0.85018 0.84306 1.90664 1.38375 1.25882 1.85753 1.48056 1.49787 1.27998 1.07233 1.21793 0.95202 0.87624 1.01461 1.19312 0.96065 0.91909 0.79949 1.21374 1.05920 1.17886 1.11182 0.92481 1.24932 0.95590 0.97281 0.96271 1.69925 1.24875 1.40279 1.18390 0.86560 0.81154 0.81804 0.77913 1.20136 1.21198 1.20266 0.90531 0.92552 0.91205 0.80358 0.88028 0.89658 0.81261 0.78988 0.73378 0.92666 0.91402 0.92712 0.93858 0.95020 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.03 37.16 0.34 -1.58 16 2 C 0.07 1.00 1.86 -68.87 -0.13 0.87 16 3 H 0.06 0.87 6.90 -51.93 -0.36 0.52 16 4 N -0.64 -8.71 5.50 -102.17 -0.56 -9.27 16 5 C 0.10 0.99 2.30 -68.86 -0.16 0.83 16 6 H 0.12 1.03 7.11 -51.93 -0.37 0.66 16 7 C -0.02 -0.20 5.39 -27.88 -0.15 -0.35 16 8 C -0.20 -1.95 5.58 -35.92 -0.20 -2.15 16 9 C 0.02 0.24 11.25 -19.18 -0.22 0.02 16 10 N -0.48 -5.46 10.54 -15.75 -0.17 -5.62 16 11 C -0.01 -0.06 12.23 51.58 0.63 0.57 16 12 S 0.18 1.92 23.22 -107.50 -2.50 -0.57 16 13 C 0.44 4.73 7.33 36.01 0.26 4.99 16 14 O -0.50 -7.51 16.40 -18.74 -0.31 -7.82 16 15 O -0.52 -3.76 13.23 -39.26 -0.52 -4.28 16 16 C 0.51 10.62 7.10 -10.99 -0.08 10.55 16 17 O -0.53 -13.33 15.22 5.55 0.08 -13.24 16 18 N -0.60 -12.74 2.86 -182.95 -0.52 -13.27 16 19 C 0.08 1.31 8.85 59.85 0.53 1.84 16 20 C 0.25 6.52 5.20 -5.19 -0.03 6.49 16 21 C -0.52 -14.94 9.39 -34.44 -0.32 -15.26 16 22 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 23 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 24 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 25 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 29 H 0.08 0.96 4.53 -51.93 -0.24 0.72 16 30 H 0.06 0.61 7.43 -51.93 -0.39 0.22 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.37 6.08 6.46 -39.29 -0.25 5.83 16 33 H 0.10 0.61 7.99 -51.93 -0.42 0.20 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.19 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.41 1.55 9.10 45.56 0.41 1.97 16 38 H 0.05 0.83 6.95 -51.93 -0.36 0.47 16 39 H 0.07 1.03 7.89 -51.93 -0.41 0.62 16 40 H 0.05 0.69 6.01 -51.93 -0.31 0.38 16 41 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 42 H 0.03 0.84 7.89 -51.93 -0.41 0.43 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 LS Contribution 376.31 15.07 5.67 5.67 Total: -1.00 -36.58 376.31 -7.44 -44.02 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -4.72 Total: 5.03 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: 0.38 Total: 8.48 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -0.51 Total: -54.23 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.74 Total: -25.35 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -2.50 Total: -0.57 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.58 -7.44 -44.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593211333.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.264 kcal (2) G-P(sol) polarization free energy of solvation -36.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds