Wall clock time and date at job start Sat Apr 11 2020 06:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47333 * 2 1 4 4 N 1.46897 * 109.47057 * 239.99978 * 2 1 3 5 5 C 1.46901 * 110.99970 * 84.99606 * 4 2 1 6 6 H 1.08992 * 109.47593 * 325.00475 * 5 4 2 7 7 C 1.52999 * 109.47212 * 204.99650 * 5 4 2 8 8 C 1.50703 * 109.47028 * 65.00571 * 7 5 4 9 9 C 1.33638 * 126.04043 * 89.70701 * 8 7 5 10 10 N 1.31784 * 114.50058 * 179.79153 * 9 8 7 11 11 C 1.29020 * 117.12541 * 0.52464 * 10 9 8 12 12 S 1.70975 * 110.16605 * 359.71459 * 11 10 9 13 13 C 1.50704 * 109.46876 * 85.00150 * 5 4 2 14 14 O 1.20820 * 119.99942 * 0.02562 * 13 5 4 15 15 O 1.34233 * 120.00040 * 179.97438 * 13 5 4 16 16 C 1.50702 * 109.47134 * 120.00039 * 2 1 3 17 17 O 1.21283 * 119.99575 * 120.00304 * 16 2 1 18 18 N 1.34771 * 120.00335 * 299.99763 * 16 2 1 19 19 C 1.46506 * 119.99594 * 0.02562 * 18 16 2 20 20 C 1.46501 * 120.00308 * 180.02562 * 18 16 2 21 21 C 1.50700 * 109.46743 * 269.99953 * 20 18 16 22 22 H 1.07996 * 120.00425 * 0.02562 * 21 20 18 23 23 C 1.37879 * 119.99720 * 179.97438 * 21 20 18 24 24 N 1.31521 * 119.99959 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99952 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47139 * 60.00228 * 25 23 21 27 27 H 1.48508 * 109.46701 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47104 * 299.99875 * 25 23 21 29 29 H 1.08999 * 109.46772 * 299.99376 * 1 2 3 30 30 H 1.08996 * 109.47066 * 60.00177 * 1 2 3 31 31 H 1.09002 * 109.46863 * 180.02562 * 1 2 3 32 32 H 1.00900 * 111.00450 * 208.95288 * 4 2 1 33 33 H 1.09003 * 109.47122 * 184.99870 * 7 5 4 34 34 H 1.09000 * 109.47637 * 305.00306 * 7 5 4 35 35 H 1.07999 * 122.74746 * 359.97438 * 9 8 7 36 36 H 1.07996 * 124.91960 * 179.74942 * 11 10 9 37 37 H 0.96698 * 117.00234 * 179.97438 * 15 13 5 38 38 H 1.09001 * 109.47060 * 90.00388 * 19 18 16 39 39 H 1.09004 * 109.47073 * 209.99877 * 19 18 16 40 40 H 1.09000 * 109.47212 * 329.99960 * 19 18 16 41 41 H 1.09000 * 109.46877 * 29.99967 * 20 18 16 42 42 H 1.09000 * 109.47251 * 150.00072 * 20 18 16 43 43 H 0.96994 * 119.99936 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0823 0.2226 -2.3469 6 1 1.2576 0.9329 -2.2907 7 6 1.9770 -0.5797 -3.6454 8 6 0.6190 -1.2281 -3.7264 9 6 -0.4771 -0.6919 -4.2714 10 7 -1.5450 -1.4626 -4.2221 11 6 -1.4133 -2.6147 -3.6565 12 16 0.1940 -2.8240 -3.1123 13 6 3.3910 0.9695 -2.3228 14 8 4.1897 0.7606 -1.4406 15 8 3.6698 1.8662 -3.2820 16 6 2.0323 -0.7104 1.2305 17 8 2.7297 -1.6965 1.1191 18 7 1.7068 -0.2500 2.4546 19 6 0.8641 0.9408 2.5890 20 6 2.1956 -0.9403 3.6507 21 6 1.2034 -1.9977 4.0611 22 1 0.2994 -2.1415 3.4880 23 6 1.4503 -2.7824 5.1677 24 7 2.5514 -2.6076 5.8653 25 14 0.2207 -4.0936 5.6760 26 1 0.0561 -5.0725 4.5716 27 1 0.7168 -4.7940 6.8879 28 1 -1.0877 -3.4569 5.9723 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.9173 -1.1205 -1.0288 33 1 2.1123 0.0874 -4.4967 34 1 2.7486 -1.3494 -3.6606 35 1 -0.4862 0.2911 -4.7185 36 1 -2.2037 -3.3419 -3.5437 37 1 4.5215 2.3205 -3.2241 38 1 -0.1837 0.6425 2.6226 39 1 1.1219 1.4665 3.5085 40 1 1.0273 1.5996 1.7360 41 1 3.1560 -1.4079 3.4334 42 1 2.3166 -0.2215 4.4611 43 1 2.7249 -3.1593 6.6439 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593211333.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:16 Heat of formation + Delta-G solvation = -95.029724 kcal Electronic energy + Delta-G solvation = -28184.251925 eV Core-core repulsion = 24162.829640 eV Total energy + Delta-G solvation = -4021.422286 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.79288 -40.78871 -40.35394 -37.79741 -36.98054 -36.65783 -34.97536 -34.19191 -31.48362 -29.69055 -28.72944 -27.58847 -26.74851 -25.61447 -24.58073 -23.57026 -21.78549 -20.72885 -20.26913 -19.17558 -18.98710 -18.68823 -18.29677 -17.78862 -17.33893 -16.78768 -16.58815 -16.26899 -16.14959 -15.60867 -15.32853 -15.14547 -14.81754 -14.64729 -14.46729 -14.15586 -14.04877 -13.67888 -13.49558 -13.40718 -13.31579 -13.12170 -12.95275 -12.84054 -12.64673 -12.60190 -12.53271 -12.28473 -12.14370 -11.87190 -11.79423 -11.70699 -10.64257 -10.56334 -10.43195 -10.01114 -9.94797 -9.62310 -9.44751 -8.22425 -6.37161 -0.08455 0.64569 1.07356 1.08179 1.36340 1.41029 1.48084 1.76717 1.96030 2.09535 2.23078 2.40622 2.90953 3.07217 3.56259 3.61542 3.79841 3.88608 3.98516 4.04173 4.19733 4.32509 4.34145 4.47630 4.54093 4.63751 4.69892 4.80712 4.83210 4.91555 4.95562 5.00353 5.19230 5.30268 5.39974 5.51863 5.54790 5.68080 5.82387 6.00211 6.05176 6.67920 6.75436 6.90151 6.90594 7.26964 7.43453 8.84748 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011290 B = 0.003629 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.466191 B = 7714.759132 C = 9300.567220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.084 3.916 3 H 0.083 0.917 4 N -0.645 5.645 5 C 0.101 3.899 6 H 0.145 0.855 7 C -0.017 4.017 8 C -0.199 4.199 9 C 0.023 3.977 10 N -0.498 5.498 11 C -0.002 4.002 12 S 0.140 5.860 13 C 0.456 3.544 14 O -0.552 6.552 15 O -0.500 6.500 16 C 0.496 3.504 17 O -0.585 6.585 18 N -0.607 5.607 19 C 0.077 3.923 20 C 0.261 3.739 21 C -0.540 4.540 22 H 0.054 0.946 23 C 0.008 3.992 24 N -0.930 5.930 25 Si 0.967 3.033 26 H -0.278 1.278 27 H -0.279 1.279 28 H -0.259 1.259 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.046 0.954 32 H 0.353 0.647 33 H 0.134 0.866 34 H 0.078 0.922 35 H 0.196 0.804 36 H 0.212 0.788 37 H 0.426 0.574 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.094 0.906 41 H -0.006 1.006 42 H 0.023 0.977 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.885 10.663 -23.390 26.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.029 4.029 3 H 0.100 0.900 4 N -0.280 5.280 5 C -0.012 4.012 6 H 0.163 0.837 7 C -0.057 4.057 8 C -0.320 4.320 9 C -0.129 4.129 10 N -0.212 5.212 11 C -0.298 4.298 12 S 0.393 5.607 13 C 0.297 3.703 14 O -0.442 6.442 15 O -0.312 6.312 16 C 0.284 3.716 17 O -0.466 6.466 18 N -0.338 5.338 19 C -0.065 4.065 20 C 0.139 3.861 21 C -0.578 4.578 22 H 0.072 0.928 23 C -0.191 4.191 24 N -0.570 5.570 25 Si 0.791 3.209 26 H -0.203 1.203 27 H -0.204 1.204 28 H -0.183 1.183 29 H 0.103 0.897 30 H 0.107 0.893 31 H 0.065 0.935 32 H 0.177 0.823 33 H 0.151 0.849 34 H 0.097 0.903 35 H 0.213 0.787 36 H 0.228 0.772 37 H 0.287 0.713 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.113 0.887 41 H 0.012 0.988 42 H 0.041 0.959 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.235 8.908 -22.915 25.364 hybrid contribution 1.274 0.550 0.931 1.671 sum -4.961 9.458 -21.983 24.440 Atomic orbital electron populations 1.21982 0.90413 1.02943 1.04265 1.21413 0.98362 0.96123 0.87008 0.89988 1.60904 1.34820 1.28936 1.03358 1.21817 0.92168 0.93860 0.93404 0.83723 1.19965 0.91264 0.99066 0.95454 1.25645 1.01128 0.98250 1.07002 1.22064 0.86154 1.01987 1.02682 1.66373 1.32012 1.04588 1.18234 1.28699 1.01415 0.98834 1.00876 1.84714 1.06981 1.16007 1.52964 1.25012 0.89874 0.77315 0.78072 1.90832 1.50493 1.64844 1.38057 1.84503 1.45257 1.51820 1.49670 1.21177 0.80077 0.84628 0.85684 1.90626 1.40670 1.28561 1.86709 1.48069 1.50402 1.29244 1.06065 1.22110 0.94810 0.86060 1.03534 1.18766 0.93845 0.91659 0.81787 1.21638 1.06079 1.18733 1.11385 0.92766 1.25865 0.97520 0.99512 0.96231 1.70052 1.26674 1.41381 1.18864 0.85475 0.79248 0.78684 0.77458 1.20307 1.20380 1.18334 0.89677 0.89285 0.93494 0.82343 0.84856 0.90314 0.78682 0.77151 0.71277 0.91392 0.91088 0.88731 0.98764 0.95858 0.92427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 9.03 71.98 0.65 -2.61 16 2 C 0.08 2.40 1.86 44.17 0.08 2.48 16 3 H 0.08 2.05 6.90 -2.39 -0.02 2.03 16 4 N -0.64 -17.10 5.50 -477.17 -2.62 -19.72 16 5 C 0.10 1.72 2.30 44.17 0.10 1.83 16 6 H 0.15 1.81 7.11 -2.39 -0.02 1.79 16 7 C -0.02 -0.24 5.39 29.85 0.16 -0.08 16 8 C -0.20 -3.34 5.58 24.64 0.14 -3.21 16 9 C 0.02 0.37 11.25 83.66 0.94 1.31 16 10 N -0.50 -10.32 10.54 -203.75 -2.15 -12.47 16 11 C 0.00 -0.04 12.23 130.66 1.60 1.56 16 12 S 0.14 2.88 23.22 -56.49 -1.31 1.57 16 13 C 0.46 8.68 7.33 71.24 0.52 9.20 16 14 O -0.55 -16.25 16.40 21.98 0.36 -15.89 16 15 O -0.50 -5.55 13.23 -51.44 -0.68 -6.23 16 16 C 0.50 21.18 7.10 87.66 0.62 21.81 16 17 O -0.59 -31.11 15.22 -3.04 -0.05 -31.16 16 18 N -0.61 -26.26 2.86 -851.11 -2.43 -28.69 16 19 C 0.08 2.30 8.85 127.77 1.13 3.43 16 20 C 0.26 14.43 5.20 85.63 0.45 14.87 16 21 C -0.54 -31.56 9.39 25.60 0.24 -31.32 16 22 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 23 C 0.01 0.44 5.46 84.65 0.46 0.90 16 24 N -0.93 -57.17 13.29 21.45 0.28 -56.88 16 25 Si 0.97 45.41 29.54 68.60 2.03 47.43 16 26 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 27 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 28 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 29 H 0.08 1.85 4.53 -2.39 -0.01 1.84 16 30 H 0.09 1.53 7.43 -2.39 -0.02 1.52 16 31 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.35 11.93 6.46 -89.69 -0.58 11.35 16 33 H 0.13 1.03 7.99 -2.39 -0.02 1.01 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.20 2.06 8.06 -2.91 -0.02 2.03 16 36 H 0.21 2.91 8.06 -2.91 -0.02 2.89 16 37 H 0.43 1.91 9.10 -74.06 -0.67 1.24 16 38 H 0.07 1.88 6.95 -2.39 -0.02 1.87 16 39 H 0.07 2.08 7.89 -2.38 -0.02 2.06 16 40 H 0.09 2.07 6.01 -2.39 -0.01 2.05 16 41 H -0.01 -0.37 7.42 -2.39 -0.02 -0.39 16 42 H 0.02 1.31 7.89 -2.39 -0.02 1.29 16 43 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -84.26 376.31 0.34 -83.91 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -0.18 Total: 17.94 kcal Atomic # 6 Polarization: 13.09 SS G_CDS: 7.09 Total: 20.19 kcal Atomic # 7 Polarization: -110.85 SS G_CDS: -6.92 Total: -117.77 kcal Atomic # 8 Polarization: -52.91 SS G_CDS: -0.37 Total: -53.28 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Atomic # 16 Polarization: 2.88 SS G_CDS: -1.31 Total: 1.57 kcal Total: -84.26 0.34 -83.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593211333.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.117 kcal (2) G-P(sol) polarization free energy of solvation -84.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds