Wall clock time and date at job start Sat Apr 11 2020 06:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 109.47133 * 2 1 4 4 C 1.46504 * 119.99897 * 269.99634 * 3 2 1 5 5 C 1.50695 * 109.47381 * 270.00070 * 4 3 2 6 6 H 1.08002 * 119.99587 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00268 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99856 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00320 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47166 * 90.00218 * 9 7 5 11 11 H 1.48502 * 109.47589 * 209.99960 * 9 7 5 12 12 H 1.48499 * 109.47208 * 330.00509 * 9 7 5 13 13 C 1.34779 * 120.00241 * 89.99718 * 3 2 1 14 14 O 1.21581 * 119.99927 * 179.97438 * 13 3 2 15 15 N 1.34778 * 119.99781 * 0.02562 * 13 3 2 16 16 C 1.39002 * 119.99826 * 179.97438 * 15 13 3 17 17 N 1.29625 * 124.94477 * 179.97438 * 16 15 13 18 18 C 1.32020 * 116.90665 * 179.97438 * 17 16 15 19 19 C 1.50706 * 122.71054 * 179.97438 * 18 17 16 20 20 C 1.52997 * 109.47238 * 345.02442 * 19 18 17 21 21 C 1.52999 * 109.46573 * 225.02468 * 19 18 17 22 22 C 1.50697 * 109.47178 * 105.02968 * 19 18 17 23 23 O 1.20833 * 120.00046 * 359.97438 * 22 19 18 24 24 O 1.34228 * 120.00167 * 180.02562 * 22 19 18 25 25 C 1.33407 * 114.57396 * 0.25433 * 18 17 16 26 26 S 1.70966 * 124.94595 * 359.97436 * 16 15 13 27 27 H 1.09009 * 109.47353 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47501 * 300.00357 * 1 2 3 29 29 H 1.09004 * 109.47381 * 60.00249 * 1 2 3 30 30 H 1.08996 * 109.46992 * 239.99512 * 2 1 3 31 31 H 1.09001 * 109.46941 * 120.00010 * 2 1 3 32 32 H 1.09001 * 109.46939 * 30.00180 * 4 3 2 33 33 H 1.09001 * 109.46905 * 149.99712 * 4 3 2 34 34 H 0.96998 * 119.99921 * 179.97438 * 8 7 5 35 35 H 0.96997 * 119.99847 * 359.97438 * 15 13 3 36 36 H 1.09002 * 109.47153 * 180.02562 * 20 19 18 37 37 H 1.09001 * 109.46832 * 60.00314 * 20 19 18 38 38 H 1.09004 * 109.47261 * 300.00295 * 20 19 18 39 39 H 1.09002 * 109.46716 * 180.02562 * 21 19 18 40 40 H 1.09000 * 109.47486 * 299.99934 * 21 19 18 41 41 H 1.09001 * 109.47362 * 60.00657 * 21 19 18 42 42 H 0.96692 * 117.00024 * 180.02562 * 24 22 19 43 43 H 1.07998 * 125.96973 * 179.72170 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3428 1.2308 -1.0957 7 6 4.1491 2.3895 -2.8779 8 7 3.3491 3.1256 -3.6181 9 14 5.9135 2.0966 -3.4168 10 1 5.9776 0.8751 -4.2591 11 1 6.3922 3.2637 -4.2003 12 1 6.7736 1.9178 -2.2195 13 6 2.2429 2.0166 1.1672 14 8 2.6486 3.1627 1.1671 15 7 2.0187 1.3811 2.3344 16 6 2.2508 2.0362 3.5382 17 7 2.0678 1.5187 4.7125 18 6 2.3400 2.2854 5.7522 19 6 2.1740 1.8171 7.1750 20 6 1.3265 0.5435 7.1972 21 6 1.4780 2.9071 7.9926 22 6 3.5281 1.5299 7.7706 23 8 4.5257 1.6887 7.1076 24 8 3.6260 1.0968 9.0373 25 6 2.7682 3.5101 5.4416 26 16 2.8192 3.6419 3.6855 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.5817 1.6876 -2.0284 33 1 2.0955 3.1410 -1.1385 34 1 3.6752 3.5160 -4.4440 35 1 1.6954 0.4666 2.3344 36 1 1.2060 0.2050 8.2263 37 1 1.8224 -0.2330 6.6147 38 1 0.3470 0.7512 6.7664 39 1 1.3583 2.5686 9.0218 40 1 2.0817 3.8145 7.9769 41 1 0.4985 3.1148 7.5619 42 1 4.5158 0.9264 9.3755 43 1 3.0377 4.2850 6.1439 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001596299406.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:35 Heat of formation + Delta-G solvation = -65.551953 kcal Electronic energy + Delta-G solvation = -27608.319087 eV Core-core repulsion = 23588.175054 eV Total energy + Delta-G solvation = -4020.144034 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -41.03840 -40.22729 -39.18537 -36.31555 -35.92697 -35.46678 -34.07462 -32.72538 -30.31553 -29.40440 -27.71249 -26.97904 -24.85183 -24.49877 -23.20902 -23.03927 -21.46846 -20.61128 -18.99851 -18.03243 -17.77273 -17.38031 -16.57688 -16.49397 -16.40059 -15.73182 -15.39250 -15.27247 -14.79704 -14.32784 -14.16206 -13.96210 -13.74101 -13.33084 -13.09658 -12.95243 -12.64202 -12.43688 -12.34223 -12.18267 -12.16675 -11.86427 -11.73938 -11.45678 -11.31674 -11.11608 -11.01562 -10.82542 -10.64525 -10.62028 -10.45866 -10.17631 -9.75948 -9.56048 -9.45820 -8.92082 -8.49624 -8.20084 -7.73076 -6.11056 -4.16175 1.04014 1.44707 2.04102 2.13498 2.45414 2.71945 3.17887 3.27450 3.34754 3.39754 3.64012 4.06337 4.27272 4.41832 4.56813 4.66666 4.97072 5.13375 5.23708 5.26043 5.34293 5.36986 5.44262 5.53283 5.56614 5.62197 5.76710 5.84180 5.86412 5.99078 6.07027 6.08307 6.27687 6.34500 6.43116 6.53170 7.13998 7.28327 7.41765 7.70611 7.84644 7.90533 8.12879 8.28307 8.75993 8.92099 9.49337 10.96936 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017184 B = 0.002823 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.065608 B = 9916.672804 C =10519.615501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.103 3.897 3 N -0.594 5.594 4 C 0.260 3.740 5 C -0.531 4.531 6 H 0.058 0.942 7 C 0.064 3.936 8 N -0.893 5.893 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.284 1.284 12 H -0.274 1.274 13 C 0.696 3.304 14 O -0.551 6.551 15 N -0.642 5.642 16 C 0.277 3.723 17 N -0.521 5.521 18 C 0.100 3.900 19 C 0.028 3.972 20 C -0.127 4.127 21 C -0.138 4.138 22 C 0.486 3.514 23 O -0.499 6.499 24 O -0.515 6.515 25 C -0.315 4.315 26 S 0.271 5.729 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.039 0.961 33 H 0.048 0.952 34 H 0.264 0.736 35 H 0.414 0.586 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.409 0.591 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.786 -4.787 22.069 23.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.022 4.022 3 N -0.327 5.327 4 C 0.141 3.859 5 C -0.570 4.570 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.396 3.604 14 O -0.427 6.427 15 N -0.297 5.297 16 C -0.092 4.092 17 N -0.245 5.245 18 C -0.033 4.033 19 C 0.024 3.976 20 C -0.185 4.185 21 C -0.195 4.195 22 C 0.326 3.674 23 O -0.385 6.385 24 O -0.327 6.327 25 C -0.456 4.456 26 S 0.522 5.478 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.111 0.889 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.253 0.747 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.267 0.733 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -6.536 -3.512 20.603 21.899 hybrid contribution 1.418 -1.248 0.628 1.991 sum -5.118 -4.760 21.231 22.352 Atomic orbital electron populations 1.22250 0.96228 1.01847 1.02674 1.21484 0.93911 0.83784 1.02982 1.47615 1.65969 1.13496 1.05663 1.19354 0.96583 0.93579 0.76383 1.21420 0.96815 1.32312 1.06426 0.92364 1.24906 0.97934 0.94759 0.96291 1.69923 1.35759 1.33197 1.14327 0.86487 0.84543 0.77715 0.78641 1.20618 1.21013 1.19843 1.15888 0.79702 0.84868 0.79916 1.90830 1.51713 1.16378 1.83773 1.42257 1.68306 1.17677 1.01419 1.23048 1.00960 0.96680 0.88503 1.65936 1.26078 1.36523 0.95975 1.18628 1.02331 0.90015 0.92372 1.18789 0.90106 0.99208 0.89479 1.21696 0.99856 0.94651 1.02255 1.21916 1.01155 0.96752 0.99724 1.23292 0.91987 0.72889 0.79200 1.90768 1.38949 1.47680 1.61121 1.84500 1.39218 1.78874 1.30069 1.27173 1.13055 1.02434 1.02987 1.85278 1.59380 1.07949 0.95204 0.91749 0.93026 0.91581 0.88935 0.92175 0.94322 0.93413 0.92597 0.74672 0.91528 0.91245 0.90717 0.90570 0.91734 0.90479 0.73273 0.81526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 10.24 37.16 0.38 -1.76 16 2 C 0.10 1.54 5.89 -4.05 -0.02 1.51 16 3 N -0.59 -11.95 2.46 -180.81 -0.44 -12.39 16 4 C 0.26 6.44 5.16 -5.19 -0.03 6.41 16 5 C -0.53 -14.56 9.39 -34.44 -0.32 -14.89 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -25.80 13.29 55.43 0.74 -25.07 16 9 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.70 14.25 8.24 -86.91 -0.72 13.54 16 14 O -0.55 -13.09 13.38 5.29 0.07 -13.02 16 15 N -0.64 -10.84 5.27 -17.48 -0.09 -10.93 16 16 C 0.28 4.74 8.19 -87.35 -0.72 4.03 16 17 N -0.52 -8.26 9.60 -11.28 -0.11 -8.36 16 18 C 0.10 1.42 4.77 -84.20 -0.40 1.02 16 19 C 0.03 0.31 0.84 -156.81 -0.13 0.18 16 20 C -0.13 -1.22 7.85 37.16 0.29 -0.93 16 21 C -0.14 -1.10 8.05 37.16 0.30 -0.80 16 22 C 0.49 5.66 6.90 36.00 0.25 5.91 16 23 O -0.50 -7.78 16.58 -18.76 -0.31 -8.09 16 24 O -0.51 -4.09 13.23 -39.25 -0.52 -4.60 16 25 C -0.32 -4.44 10.10 29.04 0.29 -4.14 16 26 S 0.27 4.54 20.21 -107.50 -2.17 2.37 16 27 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.09 1.43 8.07 -51.93 -0.42 1.01 16 31 H 0.06 0.76 6.36 -51.93 -0.33 0.43 16 32 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 33 H 0.05 1.33 7.42 -51.93 -0.39 0.95 16 34 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.41 5.84 6.55 -40.82 -0.27 5.57 16 36 H 0.07 0.51 8.11 -51.93 -0.42 0.08 16 37 H 0.07 0.77 7.97 -51.93 -0.41 0.36 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.48 8.11 -51.93 -0.42 0.06 16 40 H 0.06 0.49 7.13 -51.93 -0.37 0.12 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.41 1.62 9.10 45.56 0.41 2.04 16 43 H 0.17 1.92 7.29 -52.49 -0.38 1.54 16 LS Contribution 377.00 15.07 5.68 5.68 Total: -1.00 -34.54 377.00 -8.18 -42.72 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -5.07 Total: 3.40 kcal Atomic # 6 Polarization: 12.67 SS G_CDS: -0.92 Total: 11.75 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 0.09 Total: -56.76 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.76 Total: -25.72 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 4.54 SS G_CDS: -2.17 Total: 2.37 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.54 -8.18 -42.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596299406.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.836 kcal (2) G-P(sol) polarization free energy of solvation -34.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds