Wall clock time and date at job start Sat Apr 11 2020 06:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47105 * 2 1 4 4 C 1.46504 * 119.99991 * 269.99892 * 3 2 1 5 5 C 1.50694 * 109.47473 * 270.00192 * 4 3 2 6 6 H 1.08006 * 119.99884 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00331 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99792 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00389 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46897 * 60.00259 * 9 7 5 11 11 H 1.48503 * 109.47333 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47166 * 300.00188 * 9 7 5 13 13 C 1.34776 * 120.00290 * 90.00494 * 3 2 1 14 14 O 1.21282 * 119.99837 * 180.02562 * 13 3 2 15 15 C 1.50697 * 119.99767 * 359.97438 * 13 3 2 16 16 N 1.46901 * 109.46943 * 180.02562 * 15 13 3 17 17 C 1.46905 * 110.99870 * 180.02562 * 16 15 13 18 18 H 1.09004 * 109.46962 * 34.99990 * 17 16 15 19 19 C 1.52999 * 109.47094 * 274.99984 * 17 16 15 20 20 C 1.50696 * 109.47161 * 155.00107 * 17 16 15 21 21 N 1.29396 * 124.70635 * 44.69805 * 20 17 16 22 22 C 1.30911 * 117.46706 * 179.83673 * 21 20 17 23 23 C 1.36752 * 113.93414 * 0.44234 * 22 21 20 24 24 C 1.46498 * 126.18208 * 179.76793 * 23 22 21 25 25 O 1.21609 * 120.00135 * 180.02562 * 24 23 22 26 26 O 1.34881 * 120.00121 * 0.02562 * 24 23 22 27 27 S 1.70923 * 124.70820 * 225.00184 * 20 17 16 28 28 H 1.09001 * 109.46734 * 299.99636 * 1 2 3 29 29 H 1.08992 * 109.47153 * 59.99893 * 1 2 3 30 30 H 1.09000 * 109.47130 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46906 * 239.99837 * 2 1 3 32 32 H 1.09002 * 109.47667 * 120.00186 * 2 1 3 33 33 H 1.08999 * 109.47061 * 30.00401 * 4 3 2 34 34 H 1.08996 * 109.47411 * 149.99808 * 4 3 2 35 35 H 0.96997 * 119.99699 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.46763 * 60.00720 * 15 13 3 37 37 H 1.08995 * 109.47483 * 300.00377 * 15 13 3 38 38 H 1.00901 * 111.00067 * 303.95401 * 16 15 13 39 39 H 1.08997 * 109.47624 * 300.00377 * 19 17 16 40 40 H 1.09006 * 109.47163 * 60.00429 * 19 17 16 41 41 H 1.08999 * 109.47123 * 179.97438 * 19 17 16 42 42 H 1.08006 * 123.03452 * 180.21486 * 22 21 20 43 43 H 0.96698 * 117.00261 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6857 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0963 7 6 4.1490 2.3896 -2.8780 8 7 3.3487 3.1249 -3.6187 9 14 5.9134 2.0967 -3.4170 10 1 6.1416 0.6400 -3.5938 11 1 6.1605 2.7956 -4.7038 12 1 6.8406 2.6210 -2.3823 13 6 2.2430 2.0166 1.1672 14 8 2.6469 3.1602 1.1671 15 6 1.9914 1.3063 2.4722 16 7 2.3093 2.2065 3.5888 17 6 2.0760 1.5462 4.8802 18 1 2.3277 0.4888 4.7983 19 6 0.6032 1.6913 5.2684 20 6 2.9393 2.1879 5.9356 21 7 3.0950 3.4637 6.0845 22 6 3.8777 3.8675 7.0531 23 6 4.4359 2.8498 7.7762 24 6 5.3519 2.9958 8.9101 25 8 5.7834 2.0086 9.4742 26 8 5.7166 4.2250 9.3286 27 16 3.8544 1.3311 7.0975 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.5817 1.6877 -2.0284 34 1 2.0955 3.1410 -1.1385 35 1 3.6747 3.5153 -4.4445 36 1 2.6214 0.4187 2.5301 37 1 0.9434 1.0125 2.5299 38 1 3.2576 2.5446 3.5220 39 1 0.3514 2.7487 5.3503 40 1 -0.0213 1.2272 4.5050 41 1 0.4300 1.2010 6.2264 42 1 4.0684 4.9103 7.2600 43 1 6.3226 4.2709 10.0808 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001596299696.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:39 Heat of formation + Delta-G solvation = -72.011137 kcal Electronic energy + Delta-G solvation = -26652.852966 eV Core-core repulsion = 22632.428841 eV Total energy + Delta-G solvation = -4020.424125 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.71823 -39.95045 -39.11903 -36.66051 -36.50649 -35.22014 -32.84896 -31.86225 -30.25693 -30.05523 -27.74681 -26.74114 -25.48693 -23.58073 -23.03387 -22.64053 -22.00543 -20.09845 -18.93397 -18.50021 -17.85863 -17.21432 -16.51950 -16.29842 -16.22342 -15.86049 -15.72083 -15.11881 -14.92048 -14.49200 -14.31542 -14.04944 -13.82328 -13.54312 -13.36887 -13.13855 -12.66716 -12.41116 -12.20784 -12.06451 -12.04012 -12.00275 -11.91999 -11.66642 -11.38808 -11.36357 -11.16182 -10.92338 -10.74394 -10.52536 -10.12882 -9.98478 -9.95248 -9.64775 -9.39752 -8.93596 -8.46135 -8.42726 -7.65112 -6.03714 -4.08596 -0.34663 0.57134 1.15713 1.84292 2.57707 2.69733 3.31297 3.36179 3.37446 3.44746 3.57959 3.66603 4.22802 4.41180 4.45591 4.54334 4.81905 4.91227 4.94195 5.09012 5.22508 5.30657 5.37221 5.44355 5.45769 5.60295 5.64071 5.64814 5.78454 5.94182 6.00596 6.07065 6.22327 6.47073 6.69859 7.09967 7.22391 7.26928 7.38472 7.47037 7.56055 7.92774 8.24286 8.43694 8.90791 9.11952 9.56469 11.04291 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013172 B = 0.002447 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.142375 B =11438.245493 C =12765.691508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.527 4.527 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.505 3.495 14 O -0.525 6.525 15 C 0.038 3.962 16 N -0.650 5.650 17 C 0.160 3.840 18 H 0.067 0.933 19 C -0.136 4.136 20 C 0.057 3.943 21 N -0.453 5.453 22 C 0.138 3.862 23 C -0.314 4.314 24 C 0.570 3.430 25 O -0.514 6.514 26 O -0.504 6.504 27 S 0.239 5.761 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.032 0.968 34 H 0.043 0.957 35 H 0.264 0.736 36 H 0.055 0.945 37 H 0.099 0.901 38 H 0.358 0.642 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.193 0.807 43 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.194 -6.197 23.978 24.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.073 0.927 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.290 3.710 14 O -0.400 6.400 15 C -0.095 4.095 16 N -0.285 5.285 17 C 0.046 3.954 18 H 0.085 0.915 19 C -0.195 4.195 20 C -0.217 4.217 21 N -0.166 5.166 22 C -0.023 4.023 23 C -0.436 4.436 24 C 0.413 3.587 25 O -0.404 6.404 26 O -0.316 6.316 27 S 0.498 5.502 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.050 0.950 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.117 0.883 38 H 0.179 0.821 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.077 0.923 42 H 0.210 0.790 43 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -3.870 -6.236 23.418 24.542 hybrid contribution 2.362 0.190 0.309 2.390 sum -1.508 -6.046 23.727 24.532 Atomic orbital electron populations 1.22227 0.96765 1.01350 1.02444 1.21409 0.93547 0.84303 1.02546 1.48249 1.64069 1.13190 1.07669 1.19247 0.96136 0.93698 0.78047 1.21385 0.96971 1.31953 1.06241 0.92659 1.24930 0.97783 0.94945 0.96412 1.69922 1.35685 1.33374 1.14337 0.86575 0.84884 0.78191 0.77846 1.20305 1.21165 1.20219 1.20059 0.79105 0.87096 0.84740 1.90701 1.44910 1.17598 1.86818 1.22050 1.02641 0.94221 0.90570 1.60225 1.33520 1.36509 0.98222 1.20284 0.94431 0.94722 0.85934 0.91492 1.21834 0.92583 1.04147 1.00947 1.27880 1.00017 0.92744 1.01037 1.66146 1.17533 1.13859 1.19060 1.22867 0.90250 1.01126 0.88076 1.24933 1.13122 0.98396 1.07185 1.18986 0.77818 0.80937 0.80983 1.90973 1.53905 1.39288 1.56223 1.84564 1.63611 1.31286 1.52174 1.84094 1.36644 1.06084 1.23335 0.93005 0.91975 0.92231 0.89968 0.91972 0.95041 0.93857 0.92660 0.92718 0.88324 0.82091 0.90545 0.91041 0.92314 0.78990 0.72102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 10.24 37.16 0.38 -1.75 16 2 C 0.11 1.61 5.93 -4.04 -0.02 1.58 16 3 N -0.60 -12.25 2.46 -175.06 -0.43 -12.68 16 4 C 0.25 6.41 5.16 -5.19 -0.03 6.39 16 5 C -0.53 -14.82 9.39 -34.44 -0.32 -15.14 16 6 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.58 13.29 55.43 0.74 -25.85 16 9 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 13 C 0.50 10.17 7.71 -10.99 -0.08 10.09 16 14 O -0.52 -13.17 15.78 5.56 0.09 -13.08 16 15 C 0.04 0.52 4.52 -4.98 -0.02 0.50 16 16 N -0.65 -9.02 5.89 -109.22 -0.64 -9.67 16 17 C 0.16 1.61 3.11 -68.86 -0.21 1.40 16 18 H 0.07 0.53 7.80 -51.93 -0.40 0.13 16 19 C -0.14 -1.20 9.40 37.16 0.35 -0.85 16 20 C 0.06 0.60 5.89 -13.31 -0.08 0.53 16 21 N -0.45 -5.44 10.45 -11.26 -0.12 -5.55 16 22 C 0.14 1.39 11.20 -18.48 -0.21 1.18 16 23 C -0.31 -3.12 6.51 -36.79 -0.24 -3.36 16 24 C 0.57 5.52 8.30 34.06 0.28 5.80 16 25 O -0.51 -6.29 17.75 -19.35 -0.34 -6.63 16 26 O -0.50 -3.26 13.23 -40.99 -0.54 -3.81 16 27 S 0.24 2.18 23.00 -107.50 -2.47 -0.29 16 28 H 0.05 0.61 7.22 -51.93 -0.37 0.24 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 1.31 8.07 -51.93 -0.42 0.89 16 32 H 0.06 0.75 6.44 -51.93 -0.33 0.42 16 33 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 34 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.05 0.65 7.31 -51.93 -0.38 0.27 16 37 H 0.10 1.15 6.48 -51.93 -0.34 0.81 16 38 H 0.36 5.61 8.05 -39.29 -0.32 5.29 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.58 7.45 -51.93 -0.39 0.19 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.19 1.50 8.06 -52.48 -0.42 1.07 16 43 H 0.42 0.76 9.11 45.56 0.42 1.18 16 LS Contribution 385.69 15.07 5.81 5.81 Total: -1.00 -36.63 385.69 -8.24 -44.87 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -5.00 Total: 2.06 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: -0.31 Total: 8.01 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: -0.45 Total: -53.75 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -0.80 Total: -23.52 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 2.18 SS G_CDS: -2.47 Total: -0.29 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.63 -8.24 -44.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596299696.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.140 kcal (2) G-P(sol) polarization free energy of solvation -36.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds