Wall clock time and date at job start Sat Apr 11 2020 06:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47105 * 2 1 4 4 C 1.46504 * 119.99991 * 269.99892 * 3 2 1 5 5 C 1.50694 * 109.47473 * 270.00192 * 4 3 2 6 6 H 1.08006 * 119.99884 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00331 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99792 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00389 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46897 * 60.00259 * 9 7 5 11 11 H 1.48503 * 109.47333 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47166 * 300.00188 * 9 7 5 13 13 C 1.34776 * 120.00290 * 90.00494 * 3 2 1 14 14 O 1.21282 * 119.99837 * 180.02562 * 13 3 2 15 15 C 1.50697 * 119.99767 * 359.97438 * 13 3 2 16 16 N 1.46901 * 109.46943 * 180.02562 * 15 13 3 17 17 C 1.46905 * 110.99870 * 180.02562 * 16 15 13 18 18 H 1.09004 * 109.46962 * 34.99990 * 17 16 15 19 19 C 1.52999 * 109.47094 * 274.99984 * 17 16 15 20 20 C 1.50696 * 109.47161 * 155.00107 * 17 16 15 21 21 N 1.29396 * 124.70635 * 44.69805 * 20 17 16 22 22 C 1.30911 * 117.46706 * 179.83673 * 21 20 17 23 23 C 1.36752 * 113.93414 * 0.44234 * 22 21 20 24 24 C 1.46498 * 126.18208 * 179.76793 * 23 22 21 25 25 O 1.21609 * 120.00135 * 180.02562 * 24 23 22 26 26 O 1.34881 * 120.00121 * 0.02562 * 24 23 22 27 27 S 1.70923 * 124.70820 * 225.00184 * 20 17 16 28 28 H 1.09001 * 109.46734 * 299.99636 * 1 2 3 29 29 H 1.08992 * 109.47153 * 59.99893 * 1 2 3 30 30 H 1.09000 * 109.47130 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46906 * 239.99837 * 2 1 3 32 32 H 1.09002 * 109.47667 * 120.00186 * 2 1 3 33 33 H 1.08999 * 109.47061 * 30.00401 * 4 3 2 34 34 H 1.08996 * 109.47411 * 149.99808 * 4 3 2 35 35 H 0.96997 * 119.99699 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.46763 * 60.00720 * 15 13 3 37 37 H 1.08995 * 109.47483 * 300.00377 * 15 13 3 38 38 H 1.00901 * 111.00067 * 303.95401 * 16 15 13 39 39 H 1.08997 * 109.47624 * 300.00377 * 19 17 16 40 40 H 1.09006 * 109.47163 * 60.00429 * 19 17 16 41 41 H 1.08999 * 109.47123 * 179.97438 * 19 17 16 42 42 H 1.08006 * 123.03452 * 180.21486 * 22 21 20 43 43 H 0.96698 * 117.00261 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6857 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0963 7 6 4.1490 2.3896 -2.8780 8 7 3.3487 3.1249 -3.6187 9 14 5.9134 2.0967 -3.4170 10 1 6.1416 0.6400 -3.5938 11 1 6.1605 2.7956 -4.7038 12 1 6.8406 2.6210 -2.3823 13 6 2.2430 2.0166 1.1672 14 8 2.6469 3.1602 1.1671 15 6 1.9914 1.3063 2.4722 16 7 2.3093 2.2065 3.5888 17 6 2.0760 1.5462 4.8802 18 1 2.3277 0.4888 4.7983 19 6 0.6032 1.6913 5.2684 20 6 2.9393 2.1879 5.9356 21 7 3.0950 3.4637 6.0845 22 6 3.8777 3.8675 7.0531 23 6 4.4359 2.8498 7.7762 24 6 5.3519 2.9958 8.9101 25 8 5.7834 2.0086 9.4742 26 8 5.7166 4.2250 9.3286 27 16 3.8544 1.3311 7.0975 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.5817 1.6877 -2.0284 34 1 2.0955 3.1410 -1.1385 35 1 3.6747 3.5153 -4.4445 36 1 2.6214 0.4187 2.5301 37 1 0.9434 1.0125 2.5299 38 1 3.2576 2.5446 3.5220 39 1 0.3514 2.7487 5.3503 40 1 -0.0213 1.2272 4.5050 41 1 0.4300 1.2010 6.2264 42 1 4.0684 4.9103 7.2600 43 1 6.3226 4.2709 10.0808 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001596299696.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:38 Heat of formation + Delta-G solvation = -100.793132 kcal Electronic energy + Delta-G solvation = -26654.101047 eV Core-core repulsion = 22632.428841 eV Total energy + Delta-G solvation = -4021.672206 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.45463 -40.84665 -40.50003 -37.65845 -37.17472 -36.81051 -34.90139 -32.84932 -31.56477 -31.00979 -29.37443 -27.65387 -26.82358 -24.70368 -24.30066 -23.87909 -22.99195 -20.84236 -20.13126 -19.40441 -18.84681 -18.56308 -18.00963 -17.59017 -17.28389 -16.95252 -16.84630 -16.43979 -15.94785 -15.76487 -15.44486 -15.08661 -14.75466 -14.63296 -14.52640 -14.32097 -14.22120 -13.58272 -13.41637 -13.27215 -13.15341 -13.03694 -12.80129 -12.73890 -12.72058 -12.61725 -12.47582 -12.28451 -12.16015 -12.10309 -11.82838 -11.71809 -10.76426 -10.71231 -10.63404 -10.54894 -10.10550 -9.46130 -9.37839 -8.21094 -6.36102 -1.09129 -0.13349 0.41713 1.09381 1.36133 1.40526 1.47683 1.82741 1.90522 2.08058 2.27069 2.43102 2.85599 3.08090 3.16504 3.65480 3.73303 3.84228 4.11443 4.16302 4.23251 4.30108 4.36404 4.40745 4.51697 4.71351 4.78998 4.89465 4.95741 4.99044 5.04354 5.09608 5.24869 5.38166 5.39524 5.44798 5.59840 5.81212 5.92829 6.08488 6.13997 6.51999 6.72392 6.81919 6.87073 7.30357 7.56377 8.85668 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013172 B = 0.002447 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.142375 B =11438.245493 C =12765.691508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.099 3.901 3 N -0.605 5.605 4 C 0.264 3.736 5 C -0.541 4.541 6 H 0.054 0.946 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.967 3.033 10 H -0.259 1.259 11 H -0.280 1.280 12 H -0.279 1.279 13 C 0.493 3.507 14 O -0.588 6.588 15 C 0.055 3.945 16 N -0.671 5.671 17 C 0.158 3.842 18 H 0.100 0.900 19 C -0.133 4.133 20 C 0.047 3.953 21 N -0.487 5.487 22 C 0.136 3.864 23 C -0.329 4.329 24 C 0.576 3.424 25 O -0.544 6.544 26 O -0.495 6.495 27 S 0.277 5.723 28 H 0.063 0.937 29 H 0.034 0.966 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.105 0.895 33 H 0.020 0.980 34 H -0.007 1.007 35 H 0.267 0.733 36 H 0.088 0.912 37 H 0.130 0.870 38 H 0.344 0.656 39 H 0.051 0.949 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.207 0.793 43 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.916 -8.811 25.708 27.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.023 4.023 3 N -0.337 5.337 4 C 0.142 3.858 5 C -0.580 4.580 6 H 0.072 0.928 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.183 1.183 11 H -0.205 1.205 12 H -0.204 1.204 13 C 0.282 3.718 14 O -0.468 6.468 15 C -0.076 4.076 16 N -0.305 5.305 17 C 0.046 3.954 18 H 0.117 0.883 19 C -0.192 4.192 20 C -0.226 4.226 21 N -0.201 5.201 22 C -0.025 4.025 23 C -0.452 4.452 24 C 0.420 3.580 25 O -0.437 6.437 26 O -0.310 6.310 27 S 0.537 5.463 28 H 0.082 0.918 29 H 0.053 0.947 30 H 0.115 0.885 31 H 0.088 0.912 32 H 0.123 0.877 33 H 0.038 0.962 34 H 0.011 0.989 35 H 0.075 0.925 36 H 0.105 0.895 37 H 0.148 0.852 38 H 0.163 0.837 39 H 0.070 0.930 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.224 0.776 43 H 0.303 0.697 Dipole moment (debyes) X Y Z Total from point charges -3.622 -8.898 25.184 26.954 hybrid contribution 2.251 1.050 -0.171 2.490 sum -1.370 -7.848 25.013 26.251 Atomic orbital electron populations 1.22163 0.94595 1.03507 1.01713 1.21772 0.95313 0.81213 1.04029 1.48277 1.64142 1.15166 1.06073 1.18648 0.95164 0.91406 0.80599 1.21686 0.97926 1.31909 1.06429 0.92785 1.25873 1.02352 0.94544 0.96517 1.70053 1.37812 1.34269 1.14799 0.85483 0.79062 0.79054 0.77292 1.18316 1.20478 1.20425 1.21251 0.77414 0.86637 0.86525 1.90665 1.47633 1.20607 1.87883 1.21974 1.05034 0.93954 0.86678 1.60194 1.32729 1.37790 0.99835 1.20482 0.95116 0.95906 0.83901 0.88282 1.21838 0.91836 1.02955 1.02595 1.28008 1.00246 0.92733 1.01587 1.66165 1.18730 1.15063 1.20152 1.23069 0.89879 1.01933 0.87649 1.25142 1.13441 0.99040 1.07544 1.18941 0.77272 0.81240 0.80530 1.90961 1.55162 1.40343 1.57244 1.84531 1.63854 1.29533 1.53045 1.83883 1.35344 1.04998 1.22034 0.91811 0.94690 0.88524 0.91214 0.87720 0.96155 0.98933 0.92465 0.89477 0.85223 0.83695 0.93007 0.89871 0.90017 0.77627 0.69718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.66 10.24 71.98 0.74 -2.92 16 2 C 0.10 2.78 5.93 86.38 0.51 3.29 16 3 N -0.60 -24.89 2.46 -826.17 -2.03 -26.92 16 4 C 0.26 14.30 5.16 85.63 0.44 14.74 16 5 C -0.54 -31.25 9.39 25.60 0.24 -31.01 16 6 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 7 C 0.01 0.35 5.46 84.65 0.46 0.81 16 8 N -0.93 -56.95 13.29 21.45 0.28 -56.67 16 9 Si 0.97 45.13 29.54 68.60 2.03 47.16 16 10 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 C 0.49 19.95 7.71 87.66 0.68 20.62 16 14 O -0.59 -30.89 15.78 -3.03 -0.05 -30.93 16 15 C 0.06 1.38 4.52 85.56 0.39 1.77 16 16 N -0.67 -17.76 5.89 -499.46 -2.94 -20.71 16 17 C 0.16 2.79 3.11 44.17 0.14 2.93 16 18 H 0.10 1.13 7.80 -2.38 -0.02 1.11 16 19 C -0.13 -2.01 9.40 71.98 0.68 -1.33 16 20 C 0.05 0.93 5.89 88.47 0.52 1.45 16 21 N -0.49 -11.48 10.45 -189.54 -1.98 -13.46 16 22 C 0.14 2.64 11.20 84.48 0.95 3.59 16 23 C -0.33 -6.18 6.51 24.08 0.16 -6.03 16 24 C 0.58 10.47 8.30 69.97 0.58 11.05 16 25 O -0.54 -12.76 17.75 19.48 0.35 -12.41 16 26 O -0.50 -5.63 13.23 -57.95 -0.77 -6.39 16 27 S 0.28 4.54 23.00 -56.49 -1.30 3.24 16 28 H 0.06 1.30 7.22 -2.39 -0.02 1.28 16 29 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.07 2.14 8.07 -2.39 -0.02 2.12 16 32 H 0.10 2.07 6.44 -2.39 -0.02 2.05 16 33 H 0.02 1.13 8.07 -2.39 -0.02 1.11 16 34 H -0.01 -0.48 7.42 -2.39 -0.02 -0.49 16 35 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 36 H 0.09 1.66 7.31 -2.39 -0.02 1.64 16 37 H 0.13 2.46 6.48 -2.39 -0.02 2.45 16 38 H 0.34 10.74 8.05 -89.69 -0.72 10.02 16 39 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.08 1.05 7.45 -2.38 -0.02 1.03 16 41 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.21 3.10 8.06 -2.91 -0.02 3.08 16 43 H 0.44 0.80 9.11 -74.06 -0.67 0.12 16 Total: -1.00 -85.24 385.69 -0.26 -85.50 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -0.33 Total: 12.63 kcal Atomic # 6 Polarization: 12.50 SS G_CDS: 6.47 Total: 18.98 kcal Atomic # 7 Polarization: -111.09 SS G_CDS: -6.67 Total: -117.76 kcal Atomic # 8 Polarization: -49.27 SS G_CDS: -0.47 Total: -49.74 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Atomic # 16 Polarization: 4.54 SS G_CDS: -1.30 Total: 3.24 kcal Total: -85.24 -0.26 -85.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596299696.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.290 kcal (2) G-P(sol) polarization free energy of solvation -85.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds