Wall clock time and date at job start Sat Apr 11 2020 06:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46492 * 109.46880 * 2 1 4 4 C 1.46500 * 119.99872 * 269.99950 * 3 2 1 5 5 C 1.50700 * 109.47101 * 270.00346 * 4 3 2 6 6 H 1.08000 * 120.00396 * 0.02562 * 5 4 3 7 7 C 1.37883 * 120.00137 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99991 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 119.99790 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46989 * 90.00419 * 9 7 5 11 11 H 1.48500 * 109.47368 * 210.00451 * 9 7 5 12 12 H 1.48496 * 109.47547 * 330.00771 * 9 7 5 13 13 C 1.34777 * 120.00382 * 90.00552 * 3 2 1 14 14 O 1.21282 * 120.00345 * 179.97438 * 13 3 2 15 15 C 1.50699 * 119.99614 * 359.97438 * 13 3 2 16 16 N 1.46906 * 109.47140 * 180.02562 * 15 13 3 17 17 C 1.46898 * 110.99888 * 179.97438 * 16 15 13 18 18 H 1.09002 * 109.47557 * 324.99945 * 17 16 15 19 19 C 1.52998 * 109.47420 * 85.00182 * 17 16 15 20 20 C 1.50703 * 109.46870 * 205.00008 * 17 16 15 21 21 N 1.29393 * 124.70852 * 315.02672 * 20 17 16 22 22 C 1.30911 * 117.46670 * 179.97438 * 21 20 17 23 23 C 1.36759 * 113.93555 * 0.02562 * 22 21 20 24 24 C 1.46496 * 126.18086 * 180.02562 * 23 22 21 25 25 O 1.21605 * 120.00150 * 180.02562 * 24 23 22 26 26 O 1.34882 * 119.99800 * 0.02562 * 24 23 22 27 27 S 1.70932 * 124.70258 * 134.72351 * 20 17 16 28 28 H 1.09009 * 109.47062 * 299.99889 * 1 2 3 29 29 H 1.09003 * 109.47589 * 59.99984 * 1 2 3 30 30 H 1.08998 * 109.47502 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46533 * 239.99736 * 2 1 3 32 32 H 1.09006 * 109.46865 * 120.00032 * 2 1 3 33 33 H 1.08993 * 109.47349 * 30.00347 * 4 3 2 34 34 H 1.09001 * 109.47129 * 150.01008 * 4 3 2 35 35 H 0.97002 * 119.99773 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.47103 * 60.00237 * 15 13 3 37 37 H 1.09000 * 109.47247 * 300.00115 * 15 13 3 38 38 H 1.00901 * 111.00013 * 303.95472 * 16 15 13 39 39 H 1.09002 * 109.46948 * 59.99390 * 19 17 16 40 40 H 1.08993 * 109.47372 * 179.97438 * 19 17 16 41 41 H 1.09000 * 109.47137 * 300.00422 * 19 17 16 42 42 H 1.08007 * 123.02928 * 179.97438 * 22 21 20 43 43 H 0.96701 * 116.99867 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2624 2.0717 -1.2687 5 6 3.6857 1.8349 -1.7038 6 1 4.3426 1.2301 -1.0963 7 6 4.1493 2.3904 -2.8776 8 7 5.3912 2.1833 -3.2575 9 14 3.0130 3.4359 -3.9288 10 1 3.1157 4.8560 -3.5069 11 1 3.4065 3.3135 -5.3554 12 1 1.6134 2.9693 -3.7596 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1599 1.1671 15 6 1.9914 1.3063 2.4722 16 7 2.3092 2.2065 3.5889 17 6 2.0748 1.5465 4.8801 18 1 1.2145 0.8823 4.7979 19 6 3.3112 0.7339 5.2695 20 6 1.8058 2.5885 5.9352 21 7 2.4896 3.6764 6.0876 22 6 2.1311 4.4848 7.0528 23 6 1.0569 4.0439 7.7755 24 6 0.4353 4.7335 8.9087 25 8 -0.5204 4.2363 9.4730 26 8 0.9228 5.9198 9.3261 27 16 0.5505 2.5006 7.0920 28 1 -0.3634 0.5139 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.5816 1.6877 -2.0283 34 1 2.0955 3.1410 -1.1384 35 1 5.7173 2.5737 -4.0834 36 1 2.6214 0.4186 2.5301 37 1 0.9433 1.0125 2.5299 38 1 3.2575 2.5446 3.5221 39 1 4.1715 1.3981 5.3518 40 1 3.1375 0.2446 6.2278 41 1 3.5059 -0.0197 4.5064 42 1 2.6383 5.4155 7.2602 43 1 0.4798 6.3365 10.0779 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001596299697.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:42 Heat of formation + Delta-G solvation = -69.622055 kcal Electronic energy + Delta-G solvation = -26658.351341 eV Core-core repulsion = 22638.030815 eV Total energy + Delta-G solvation = -4020.320527 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.65732 -39.89359 -39.23822 -36.81562 -36.47258 -35.34542 -32.78501 -31.86172 -30.41655 -30.11517 -28.08798 -26.71468 -25.61648 -23.60424 -23.00499 -22.63962 -21.95097 -20.12161 -18.92162 -18.45164 -17.84400 -17.12764 -16.93051 -16.44450 -16.17935 -16.07679 -15.46875 -15.03619 -14.89562 -14.44767 -14.37899 -14.15297 -13.77971 -13.54940 -13.46932 -13.21010 -12.89860 -12.53730 -12.44767 -12.14763 -12.09640 -12.02972 -11.97499 -11.70952 -11.66967 -11.38307 -11.34730 -10.97767 -10.75344 -10.50088 -10.15845 -9.94997 -9.87568 -9.54874 -9.31654 -9.07769 -8.59026 -8.49269 -7.72924 -6.09219 -4.07822 -0.24876 0.64945 1.23954 1.90778 2.64174 2.74720 3.29319 3.33112 3.35191 3.37721 3.57822 3.71115 4.20444 4.39674 4.44306 4.60380 4.69106 4.82719 4.97164 4.98766 5.14550 5.24497 5.26182 5.30983 5.36808 5.48127 5.54350 5.67482 5.70304 5.84241 5.93314 5.97443 6.12298 6.36590 6.58960 6.77113 6.96611 7.26564 7.30803 7.34819 7.42935 7.61077 8.24651 8.46413 8.92200 8.99074 9.51386 11.04112 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018023 B = 0.002247 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.201112 B =12455.964774 C =12965.779840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.594 5.594 4 C 0.217 3.783 5 C -0.528 4.528 6 H 0.073 0.927 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.507 3.493 14 O -0.524 6.524 15 C 0.041 3.959 16 N -0.657 5.657 17 C 0.156 3.844 18 H 0.103 0.897 19 C -0.179 4.179 20 C 0.085 3.915 21 N -0.464 5.464 22 C 0.142 3.858 23 C -0.320 4.320 24 C 0.571 3.429 25 O -0.516 6.516 26 O -0.505 6.505 27 S 0.235 5.765 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.029 0.971 34 H 0.036 0.964 35 H 0.264 0.736 36 H 0.060 0.940 37 H 0.097 0.903 38 H 0.366 0.634 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.191 0.809 43 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.699 -3.443 23.242 25.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.018 4.018 3 N -0.327 5.327 4 C 0.097 3.903 5 C -0.566 4.566 6 H 0.092 0.908 7 C -0.131 4.131 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.293 3.707 14 O -0.399 6.399 15 C -0.092 4.092 16 N -0.291 5.291 17 C 0.042 3.958 18 H 0.121 0.879 19 C -0.240 4.240 20 C -0.190 4.190 21 N -0.177 5.177 22 C -0.020 4.020 23 C -0.442 4.442 24 C 0.413 3.587 25 O -0.406 6.406 26 O -0.317 6.317 27 S 0.494 5.506 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.085 0.915 33 H 0.047 0.953 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.115 0.885 38 H 0.188 0.812 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.208 0.792 43 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -11.410 -3.479 22.700 25.643 hybrid contribution 0.439 1.090 0.040 1.176 sum -10.971 -2.389 22.739 25.360 Atomic orbital electron populations 1.22245 0.96763 1.01550 1.02326 1.21441 0.93403 0.83914 1.03051 1.47924 1.64463 1.13336 1.06957 1.19634 0.97251 0.93423 0.80025 1.21316 0.95337 1.32845 1.07115 0.90841 1.24861 0.94999 0.95806 0.97386 1.69897 1.15144 1.45008 1.23574 0.86846 0.81441 0.81660 0.79710 1.19892 1.21116 1.19093 1.20103 0.78809 0.87072 0.84762 1.90702 1.44680 1.17720 1.86828 1.21968 1.02444 0.94541 0.90207 1.59986 1.34414 1.36471 0.98260 1.20156 0.99482 0.89409 0.86793 0.87949 1.22527 0.97974 1.00784 1.02686 1.27747 0.94470 0.97163 0.99596 1.66080 1.29876 1.02829 1.18949 1.22799 0.91908 0.99245 0.88032 1.24844 1.08150 1.03777 1.07431 1.19002 0.80029 0.78651 0.80972 1.90965 1.26946 1.66419 1.56264 1.84568 1.60593 1.34359 1.52197 1.83999 1.28974 1.14311 1.23270 0.92948 0.92178 0.91993 0.89704 0.91544 0.95296 0.94590 0.92578 0.92195 0.88514 0.81162 0.90867 0.91512 0.90768 0.79217 0.72199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 10.24 37.16 0.38 -1.61 16 2 C 0.11 1.53 5.93 -4.05 -0.02 1.50 16 3 N -0.59 -11.65 2.46 -175.06 -0.43 -12.08 16 4 C 0.22 5.23 4.23 -5.19 -0.02 5.20 16 5 C -0.53 -14.94 9.94 -34.44 -0.34 -15.28 16 6 H 0.07 2.27 8.06 -52.49 -0.42 1.85 16 7 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 8 N -0.90 -27.52 13.96 55.43 0.77 -26.75 16 9 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 10 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 13 C 0.51 9.85 7.71 -10.99 -0.08 9.77 16 14 O -0.52 -12.72 15.78 5.56 0.09 -12.63 16 15 C 0.04 0.54 4.52 -4.97 -0.02 0.51 16 16 N -0.66 -8.75 5.82 -109.21 -0.64 -9.39 16 17 C 0.16 1.49 3.08 -68.87 -0.21 1.28 16 18 H 0.10 0.75 7.79 -51.93 -0.40 0.34 16 19 C -0.18 -1.44 9.14 37.16 0.34 -1.10 16 20 C 0.08 0.89 6.24 -13.30 -0.08 0.81 16 21 N -0.46 -5.59 10.45 -11.25 -0.12 -5.70 16 22 C 0.14 1.45 11.20 -18.48 -0.21 1.25 16 23 C -0.32 -3.25 6.51 -36.79 -0.24 -3.49 16 24 C 0.57 5.61 8.30 34.06 0.28 5.89 16 25 O -0.52 -6.36 17.75 -19.35 -0.34 -6.70 16 26 O -0.51 -3.34 13.23 -40.99 -0.54 -3.88 16 27 S 0.23 2.16 23.00 -107.50 -2.47 -0.31 16 28 H 0.05 0.57 7.22 -51.92 -0.37 0.20 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 32 H 0.07 0.77 6.44 -51.93 -0.33 0.43 16 33 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 34 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 35 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 36 H 0.06 0.67 6.70 -51.93 -0.35 0.32 16 37 H 0.10 1.05 7.10 -51.93 -0.37 0.68 16 38 H 0.37 5.50 8.17 -39.29 -0.32 5.18 16 39 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.55 7.46 -51.93 -0.39 0.16 16 42 H 0.19 1.52 8.06 -52.48 -0.42 1.10 16 43 H 0.42 0.81 9.11 45.56 0.42 1.22 16 LS Contribution 382.21 15.07 5.76 5.76 Total: -1.00 -37.59 382.21 -7.89 -45.49 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -4.97 Total: 2.60 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -0.33 Total: 6.72 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: -0.41 Total: -53.92 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.80 Total: -23.21 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -2.47 Total: -0.31 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.59 -7.89 -45.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596299697.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.136 kcal (2) G-P(sol) polarization free energy of solvation -37.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds