Wall clock time and date at job start Sat Apr 11 2020 06:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46492 * 109.46880 * 2 1 4 4 C 1.46500 * 119.99872 * 269.99950 * 3 2 1 5 5 C 1.50700 * 109.47101 * 270.00346 * 4 3 2 6 6 H 1.08000 * 120.00396 * 0.02562 * 5 4 3 7 7 C 1.37883 * 120.00137 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99991 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 119.99790 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46989 * 90.00419 * 9 7 5 11 11 H 1.48500 * 109.47368 * 210.00451 * 9 7 5 12 12 H 1.48496 * 109.47547 * 330.00771 * 9 7 5 13 13 C 1.34777 * 120.00382 * 90.00552 * 3 2 1 14 14 O 1.21282 * 120.00345 * 179.97438 * 13 3 2 15 15 C 1.50699 * 119.99614 * 359.97438 * 13 3 2 16 16 N 1.46906 * 109.47140 * 180.02562 * 15 13 3 17 17 C 1.46898 * 110.99888 * 179.97438 * 16 15 13 18 18 H 1.09002 * 109.47557 * 324.99945 * 17 16 15 19 19 C 1.52998 * 109.47420 * 85.00182 * 17 16 15 20 20 C 1.50703 * 109.46870 * 205.00008 * 17 16 15 21 21 N 1.29393 * 124.70852 * 315.02672 * 20 17 16 22 22 C 1.30911 * 117.46670 * 179.97438 * 21 20 17 23 23 C 1.36759 * 113.93555 * 0.02562 * 22 21 20 24 24 C 1.46496 * 126.18086 * 180.02562 * 23 22 21 25 25 O 1.21605 * 120.00150 * 180.02562 * 24 23 22 26 26 O 1.34882 * 119.99800 * 0.02562 * 24 23 22 27 27 S 1.70932 * 124.70258 * 134.72351 * 20 17 16 28 28 H 1.09009 * 109.47062 * 299.99889 * 1 2 3 29 29 H 1.09003 * 109.47589 * 59.99984 * 1 2 3 30 30 H 1.08998 * 109.47502 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46533 * 239.99736 * 2 1 3 32 32 H 1.09006 * 109.46865 * 120.00032 * 2 1 3 33 33 H 1.08993 * 109.47349 * 30.00347 * 4 3 2 34 34 H 1.09001 * 109.47129 * 150.01008 * 4 3 2 35 35 H 0.97002 * 119.99773 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.47103 * 60.00237 * 15 13 3 37 37 H 1.09000 * 109.47247 * 300.00115 * 15 13 3 38 38 H 1.00901 * 111.00013 * 303.95472 * 16 15 13 39 39 H 1.09002 * 109.46948 * 59.99390 * 19 17 16 40 40 H 1.08993 * 109.47372 * 179.97438 * 19 17 16 41 41 H 1.09000 * 109.47137 * 300.00422 * 19 17 16 42 42 H 1.08007 * 123.02928 * 179.97438 * 22 21 20 43 43 H 0.96701 * 116.99867 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2624 2.0717 -1.2687 5 6 3.6857 1.8349 -1.7038 6 1 4.3426 1.2301 -1.0963 7 6 4.1493 2.3904 -2.8776 8 7 5.3912 2.1833 -3.2575 9 14 3.0130 3.4359 -3.9288 10 1 3.1157 4.8560 -3.5069 11 1 3.4065 3.3135 -5.3554 12 1 1.6134 2.9693 -3.7596 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1599 1.1671 15 6 1.9914 1.3063 2.4722 16 7 2.3092 2.2065 3.5889 17 6 2.0748 1.5465 4.8801 18 1 1.2145 0.8823 4.7979 19 6 3.3112 0.7339 5.2695 20 6 1.8058 2.5885 5.9352 21 7 2.4896 3.6764 6.0876 22 6 2.1311 4.4848 7.0528 23 6 1.0569 4.0439 7.7755 24 6 0.4353 4.7335 8.9087 25 8 -0.5204 4.2363 9.4730 26 8 0.9228 5.9198 9.3261 27 16 0.5505 2.5006 7.0920 28 1 -0.3634 0.5139 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.5816 1.6877 -2.0283 34 1 2.0955 3.1410 -1.1384 35 1 5.7173 2.5737 -4.0834 36 1 2.6214 0.4186 2.5301 37 1 0.9433 1.0125 2.5299 38 1 3.2575 2.5446 3.5221 39 1 4.1715 1.3981 5.3518 40 1 3.1375 0.2446 6.2278 41 1 3.5059 -0.0197 4.5064 42 1 2.6383 5.4155 7.2602 43 1 0.4798 6.3365 10.0779 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001596299697.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:41 Heat of formation + Delta-G solvation = -99.897205 kcal Electronic energy + Delta-G solvation = -26659.664170 eV Core-core repulsion = 22638.030815 eV Total energy + Delta-G solvation = -4021.633356 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.39839 -40.85846 -40.48087 -37.76704 -37.14965 -36.85799 -34.84903 -32.86514 -31.80003 -30.96442 -29.68394 -27.48698 -26.87976 -24.40472 -24.32243 -23.79066 -23.15496 -20.86059 -20.10090 -19.35823 -19.09432 -18.74600 -17.98042 -17.58160 -17.34001 -16.91746 -16.71979 -16.38619 -15.83967 -15.72704 -15.30394 -15.08994 -14.81960 -14.67720 -14.58731 -14.48914 -14.29508 -13.76264 -13.63395 -13.43017 -13.24220 -13.03119 -12.84925 -12.70399 -12.69809 -12.52130 -12.38129 -12.32338 -12.13424 -12.02675 -11.85139 -11.72777 -10.82509 -10.77395 -10.64444 -10.57471 -10.04777 -9.45703 -9.35565 -8.33390 -6.37447 -1.00121 -0.05950 0.49359 1.15066 1.32169 1.36599 1.44371 1.86722 1.88100 2.12208 2.26985 2.31214 2.99848 3.01241 3.19809 3.70060 3.72270 3.89940 4.04245 4.14168 4.15819 4.33637 4.35917 4.40064 4.49621 4.66918 4.69527 4.79981 4.83572 4.93861 4.97055 5.05316 5.06153 5.21544 5.41826 5.43683 5.49311 5.67662 5.83676 6.17782 6.26197 6.58400 6.63742 6.78642 6.84611 7.23708 7.50160 8.83346 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018023 B = 0.002247 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.201112 B =12455.964774 C =12965.779840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.097 3.903 3 N -0.602 5.602 4 C 0.226 3.774 5 C -0.531 4.531 6 H 0.031 0.969 7 C 0.010 3.990 8 N -0.945 5.945 9 Si 0.945 3.055 10 H -0.279 1.279 11 H -0.275 1.275 12 H -0.239 1.239 13 C 0.495 3.505 14 O -0.585 6.585 15 C 0.057 3.943 16 N -0.677 5.677 17 C 0.156 3.844 18 H 0.134 0.866 19 C -0.174 4.174 20 C 0.073 3.927 21 N -0.497 5.497 22 C 0.138 3.862 23 C -0.336 4.336 24 C 0.577 3.423 25 O -0.546 6.546 26 O -0.496 6.496 27 S 0.273 5.727 28 H 0.064 0.936 29 H 0.041 0.959 30 H 0.095 0.905 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.046 0.954 34 H 0.013 0.987 35 H 0.268 0.732 36 H 0.088 0.912 37 H 0.132 0.868 38 H 0.351 0.649 39 H 0.053 0.947 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.204 0.796 43 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.287 -4.760 24.351 28.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.025 4.025 3 N -0.333 5.333 4 C 0.103 3.897 5 C -0.570 4.570 6 H 0.049 0.951 7 C -0.188 4.188 8 N -0.585 5.585 9 Si 0.768 3.232 10 H -0.205 1.205 11 H -0.200 1.200 12 H -0.162 1.162 13 C 0.283 3.717 14 O -0.465 6.465 15 C -0.075 4.075 16 N -0.310 5.310 17 C 0.042 3.958 18 H 0.152 0.848 19 C -0.234 4.234 20 C -0.201 4.201 21 N -0.211 5.211 22 C -0.024 4.024 23 C -0.459 4.459 24 C 0.421 3.579 25 O -0.439 6.439 26 O -0.311 6.311 27 S 0.533 5.467 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.113 0.887 31 H 0.088 0.912 32 H 0.120 0.880 33 H 0.064 0.936 34 H 0.031 0.969 35 H 0.077 0.923 36 H 0.105 0.895 37 H 0.149 0.851 38 H 0.171 0.829 39 H 0.072 0.928 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.221 0.779 43 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges -14.038 -4.845 23.846 28.092 hybrid contribution 1.317 1.491 -0.202 2.000 sum -12.721 -3.354 23.644 27.058 Atomic orbital electron populations 1.22172 0.94071 1.03639 1.02067 1.21800 0.95536 0.80982 1.04140 1.48053 1.64406 1.15250 1.05637 1.19244 0.94726 0.92874 0.82815 1.21559 0.97052 1.31810 1.06552 0.95090 1.25829 0.96661 0.97238 0.99045 1.70046 1.17335 1.46646 1.24485 0.85750 0.80544 0.78997 0.77863 1.20487 1.20002 1.16228 1.21280 0.77157 0.86661 0.86575 1.90666 1.47340 1.20641 1.87869 1.21929 1.04932 0.94139 0.86501 1.59949 1.33544 1.37654 0.99872 1.20380 1.01258 0.89400 0.84724 0.84849 1.22481 0.96513 1.00379 1.04065 1.27980 0.94809 0.97085 1.00198 1.66107 1.31130 1.03885 1.20012 1.23010 0.92052 0.99614 0.87688 1.25068 1.08411 1.04567 1.07808 1.18956 0.79398 0.79057 0.80525 1.90952 1.28263 1.67373 1.57267 1.84535 1.60398 1.33064 1.53076 1.83786 1.27487 1.13419 1.22029 0.91738 0.93938 0.88659 0.91176 0.88025 0.93579 0.96860 0.92350 0.89468 0.85054 0.82883 0.92819 0.89544 0.89794 0.77910 0.69805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 10.24 71.98 0.74 -2.43 16 2 C 0.10 2.57 5.93 86.38 0.51 3.08 16 3 N -0.60 -23.22 2.46 -826.17 -2.03 -25.25 16 4 C 0.23 10.95 4.23 85.63 0.36 11.31 16 5 C -0.53 -31.06 9.94 25.60 0.25 -30.81 16 6 H 0.03 2.01 8.06 -2.91 -0.02 1.99 16 7 C 0.01 0.60 5.47 84.66 0.46 1.07 16 8 N -0.94 -59.78 13.96 21.45 0.30 -59.49 16 9 Si 0.95 44.89 27.47 68.60 1.88 46.77 16 10 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.24 -10.20 6.54 99.48 0.65 -9.55 16 13 C 0.49 19.05 7.71 87.66 0.68 19.72 16 14 O -0.59 -29.34 15.78 -3.04 -0.05 -29.39 16 15 C 0.06 1.34 4.52 85.56 0.39 1.73 16 16 N -0.68 -17.17 5.82 -499.45 -2.91 -20.08 16 17 C 0.16 2.61 3.08 44.17 0.14 2.74 16 18 H 0.13 1.37 7.79 -2.39 -0.02 1.35 16 19 C -0.17 -2.42 9.14 71.98 0.66 -1.76 16 20 C 0.07 1.43 6.24 88.47 0.55 1.98 16 21 N -0.50 -11.77 10.45 -189.52 -1.98 -13.75 16 22 C 0.14 2.75 11.20 84.48 0.95 3.69 16 23 C -0.34 -6.46 6.51 24.08 0.16 -6.31 16 24 C 0.58 10.67 8.30 69.97 0.58 11.25 16 25 O -0.55 -12.90 17.75 19.49 0.35 -12.55 16 26 O -0.50 -5.81 13.23 -57.96 -0.77 -6.57 16 27 S 0.27 4.51 23.00 -56.49 -1.30 3.21 16 28 H 0.06 1.12 7.22 -2.38 -0.02 1.11 16 29 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.07 2.05 8.07 -2.39 -0.02 2.04 16 32 H 0.10 1.95 6.44 -2.38 -0.02 1.93 16 33 H 0.05 2.07 7.13 -2.39 -0.02 2.05 16 34 H 0.01 0.71 6.85 -2.39 -0.02 0.69 16 35 H 0.27 15.77 8.31 -92.71 -0.77 14.99 16 36 H 0.09 1.62 6.70 -2.38 -0.02 1.61 16 37 H 0.13 2.23 7.10 -2.39 -0.02 2.21 16 38 H 0.35 10.70 8.17 -89.69 -0.73 9.97 16 39 H 0.05 0.97 8.13 -2.39 -0.02 0.95 16 40 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.08 1.00 7.46 -2.39 -0.02 0.98 16 42 H 0.20 3.17 8.06 -2.91 -0.02 3.15 16 43 H 0.44 0.91 9.11 -74.06 -0.67 0.23 16 Total: -1.00 -87.12 382.21 -0.47 -87.60 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -0.39 Total: 14.23 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: 6.42 Total: 15.27 kcal Atomic # 7 Polarization: -111.94 SS G_CDS: -6.62 Total: -118.56 kcal Atomic # 8 Polarization: -48.05 SS G_CDS: -0.47 Total: -48.52 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.88 Total: 46.77 kcal Atomic # 16 Polarization: 4.51 SS G_CDS: -1.30 Total: 3.21 kcal Total: -87.12 -0.47 -87.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596299697.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.299 kcal (2) G-P(sol) polarization free energy of solvation -87.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds