Wall clock time and date at job start Sat Apr 11 2020 06:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 N 1.46507 * 109.46853 * 240.00230 * 2 1 3 5 5 C 1.34775 * 119.99876 * 85.00265 * 4 2 1 6 6 O 1.21583 * 120.00144 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99585 * 179.97438 * 5 4 2 8 8 C 1.46499 * 119.99665 * 179.72218 * 7 5 4 9 9 C 1.53004 * 109.47198 * 180.27868 * 8 7 5 10 10 C 1.52998 * 109.46876 * 299.99984 * 9 8 7 11 11 C 1.53005 * 109.46795 * 60.00011 * 9 8 7 12 12 C 1.50700 * 109.47208 * 180.02562 * 9 8 7 13 13 H 1.08002 * 119.99770 * 359.97438 * 12 9 8 14 14 C 1.37876 * 119.99720 * 179.97438 * 12 9 8 15 15 N 1.31514 * 120.00513 * 0.02562 * 14 12 9 16 16 Si 1.86809 * 119.99651 * 179.97438 * 14 12 9 17 17 H 1.48495 * 109.47265 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.46830 * 120.00397 * 16 14 12 19 19 H 1.48503 * 109.47108 * 240.00004 * 16 14 12 20 20 C 1.50702 * 109.47105 * 120.00422 * 2 1 3 21 21 N 1.29391 * 124.70851 * 75.02629 * 20 2 1 22 22 C 1.30918 * 117.46796 * 179.97438 * 21 20 2 23 23 C 1.36754 * 113.92934 * 359.97438 * 22 21 20 24 24 C 1.46501 * 126.17658 * 180.02562 * 23 22 21 25 25 O 1.21617 * 120.00078 * 180.02562 * 24 23 22 26 26 O 1.34871 * 120.00213 * 0.02982 * 24 23 22 27 27 S 1.70925 * 124.70236 * 254.71878 * 20 2 1 28 28 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 29 29 H 1.09003 * 109.46809 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 31 31 H 0.97000 * 119.99601 * 264.99604 * 4 2 1 32 32 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 33 33 H 1.09009 * 109.47454 * 300.27637 * 8 7 5 34 34 H 1.08998 * 109.47492 * 60.27932 * 8 7 5 35 35 H 1.08996 * 109.47009 * 60.00253 * 10 9 8 36 36 H 1.09004 * 109.46783 * 179.97438 * 10 9 8 37 37 H 1.08998 * 109.47156 * 300.00070 * 10 9 8 38 38 H 1.09000 * 109.47011 * 60.00556 * 11 9 8 39 39 H 1.09004 * 109.46658 * 180.02562 * 11 9 8 40 40 H 1.08996 * 109.47069 * 299.99740 * 11 9 8 41 41 H 0.96999 * 120.00239 * 180.02562 * 15 14 12 42 42 H 1.07993 * 123.03106 * 179.97438 * 22 21 20 43 43 H 0.96699 * 117.00718 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1470 -0.0182 -2.3572 6 8 1.8575 1.1614 -2.4118 7 7 2.5967 -0.6534 -3.4575 8 6 2.7309 0.0760 -4.7209 9 6 3.2505 -0.8715 -5.8041 10 6 4.6148 -1.4239 -5.3868 11 6 2.2655 -2.0282 -5.9851 12 6 3.3891 -0.1210 -7.1036 13 1 3.1318 0.9268 -7.1521 14 6 3.8442 -0.7721 -8.2305 15 7 4.1570 -2.0481 -8.1715 16 14 4.0154 0.1580 -9.8415 17 1 3.6016 1.5704 -9.6440 18 1 5.4304 0.1152 -10.2898 19 1 3.1506 -0.4722 -10.8712 20 6 2.0323 -0.7105 1.2304 21 7 2.0188 -1.9935 1.3974 22 6 2.4924 -2.4607 2.5250 23 6 2.9433 -1.4936 3.3803 24 6 3.5239 -1.7149 4.7071 25 8 3.8895 -0.7677 5.3766 26 8 3.6531 -2.9691 5.1860 27 16 2.7059 0.0663 2.5959 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.2490 -1.6318 -1.1527 32 1 2.8273 -1.5946 -3.4140 33 1 1.7588 0.4696 -5.0183 34 1 3.4325 0.9001 -4.5920 35 1 4.5150 -1.9666 -4.4468 36 1 4.9848 -2.0992 -6.1583 37 1 5.3165 -0.5998 -5.2578 38 1 1.2935 -1.6346 -6.2825 39 1 2.6359 -2.7034 -6.7565 40 1 2.1657 -2.5709 -5.0452 41 1 4.4776 -2.5061 -8.9643 42 1 2.5240 -3.5146 2.7585 43 1 4.0421 -3.0652 6.0661 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609765998.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:47 Heat of formation + Delta-G solvation = -78.606818 kcal Electronic energy + Delta-G solvation = -26661.006896 eV Core-core repulsion = 22640.296761 eV Total energy + Delta-G solvation = -4020.710135 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.83987 -40.19693 -39.47351 -36.73117 -36.57915 -35.41797 -33.33102 -31.74354 -30.79024 -29.90144 -26.77576 -25.71461 -25.58638 -24.85393 -23.73846 -22.87887 -21.02944 -20.08331 -19.05032 -18.78544 -18.45014 -17.68323 -17.28952 -16.31081 -15.92734 -15.79840 -15.33404 -15.05568 -14.78623 -14.67071 -14.37907 -14.07967 -13.87453 -13.48028 -13.30159 -12.87695 -12.64379 -12.34884 -12.17137 -12.12820 -12.09696 -11.67374 -11.47694 -11.37508 -11.19957 -10.87668 -10.65513 -10.38313 -10.24276 -10.20427 -10.08585 -9.85780 -9.62641 -9.51469 -9.30796 -9.13621 -8.77652 -8.42335 -8.23921 -6.01701 -4.11538 -0.45084 0.46702 1.07138 1.71747 2.44417 2.61057 3.02363 3.27590 3.36332 3.40605 3.41396 3.59536 4.30526 4.38861 4.44487 4.67462 4.84292 4.91229 4.96077 5.25220 5.36713 5.53050 5.65048 5.87356 6.01869 6.19763 6.36181 6.44574 6.51857 6.79118 6.84084 6.89985 7.03727 7.04387 7.07251 7.26939 7.30167 7.39992 7.56804 7.70640 8.01918 8.13085 8.37369 8.43120 8.88039 8.96553 9.54271 10.99733 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.023819 B = 0.002025 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.256308 B =13824.945323 C =14274.055415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.240 3.760 3 H 0.111 0.889 4 N -0.742 5.742 5 C 0.701 3.299 6 O -0.598 6.598 7 N -0.729 5.729 8 C 0.150 3.850 9 C 0.055 3.945 10 C -0.130 4.130 11 C -0.130 4.130 12 C -0.504 4.504 13 H 0.058 0.942 14 C 0.065 3.935 15 N -0.886 5.886 16 Si 0.893 3.107 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.285 1.285 20 C 0.047 3.953 21 N -0.473 5.473 22 C 0.137 3.863 23 C -0.316 4.316 24 C 0.570 3.430 25 O -0.512 6.512 26 O -0.505 6.505 27 S 0.272 5.728 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.403 0.597 32 H 0.395 0.605 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.005 0.995 36 H 0.085 0.915 37 H 0.026 0.974 38 H 0.027 0.973 39 H 0.085 0.915 40 H 0.006 0.994 41 H 0.259 0.741 42 H 0.194 0.806 43 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.716 -3.007 24.803 25.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.130 3.870 3 H 0.129 0.871 4 N -0.401 5.401 5 C 0.401 3.599 6 O -0.477 6.477 7 N -0.383 5.383 8 C 0.027 3.973 9 C 0.054 3.946 10 C -0.188 4.188 11 C -0.188 4.188 12 C -0.542 4.542 13 H 0.077 0.923 14 C -0.136 4.136 15 N -0.525 5.525 16 Si 0.721 3.279 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.226 4.226 21 N -0.187 5.187 22 C -0.024 4.024 23 C -0.439 4.439 24 C 0.412 3.588 25 O -0.401 6.401 26 O -0.317 6.317 27 S 0.532 5.468 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.238 0.762 32 H 0.230 0.770 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.024 0.976 36 H 0.104 0.896 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.103 0.897 40 H 0.025 0.975 41 H 0.069 0.931 42 H 0.211 0.789 43 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -3.979 -0.931 24.186 24.528 hybrid contribution 0.662 -1.607 0.040 1.738 sum -3.318 -2.538 24.225 24.582 Atomic orbital electron populations 1.22224 0.92639 1.03454 1.03458 1.19246 0.94851 0.95126 0.77743 0.87124 1.45060 1.72965 1.14030 1.08025 1.16000 0.78604 0.85089 0.80222 1.90887 1.57776 1.14373 1.84654 1.45509 1.69100 1.14202 1.09526 1.21617 1.00151 0.94995 0.80504 1.18378 0.92174 0.92152 0.91849 1.21823 0.98632 1.00124 0.98213 1.21821 0.98165 0.99768 0.99019 1.21017 1.43799 0.96278 0.93128 0.92335 1.24887 0.95055 0.94887 0.98770 1.69814 1.44879 1.08856 1.28916 0.86518 0.77620 0.80174 0.83585 1.19741 1.21105 1.21092 1.27962 0.99611 0.93336 1.01715 1.66089 1.18832 1.11859 1.21916 1.22745 0.91999 1.01395 0.86281 1.24984 1.19351 0.98737 1.00790 1.18971 0.74750 0.80766 0.84321 1.90988 1.47125 1.42982 1.59045 1.84549 1.77213 1.29957 1.39989 1.84241 1.50540 1.04880 1.07182 0.90016 0.91357 0.91542 0.76242 0.77035 0.92817 0.92855 0.97557 0.89643 0.95449 0.95423 0.89664 0.97512 0.93086 0.78950 0.72025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.47 37.16 0.35 -1.19 16 2 C 0.24 2.60 3.07 -69.08 -0.21 2.39 16 3 H 0.11 1.25 7.57 -51.93 -0.39 0.85 16 4 N -0.74 -9.49 5.07 -59.81 -0.30 -9.80 16 5 C 0.70 11.85 8.53 -86.92 -0.74 11.11 16 6 O -0.60 -12.06 16.01 5.29 0.08 -11.97 16 7 N -0.73 -12.76 4.96 -65.22 -0.32 -13.09 16 8 C 0.15 3.15 4.50 -4.04 -0.02 3.13 16 9 C 0.06 1.26 0.50 -155.66 -0.08 1.19 16 10 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 11 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 12 C -0.50 -13.06 8.01 -34.44 -0.28 -13.34 16 13 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 14 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16 15 N -0.89 -23.47 9.35 55.43 0.52 -22.95 16 16 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 C 0.05 0.45 6.20 -13.31 -0.08 0.37 16 21 N -0.47 -4.55 10.10 -11.26 -0.11 -4.66 16 22 C 0.14 1.11 11.20 -18.48 -0.21 0.90 16 23 C -0.32 -2.75 6.51 -36.79 -0.24 -2.99 16 24 C 0.57 4.91 8.30 34.06 0.28 5.19 16 25 O -0.51 -5.84 17.75 -19.36 -0.34 -6.19 16 26 O -0.50 -2.70 13.23 -40.96 -0.54 -3.24 16 27 S 0.27 2.32 23.00 -107.50 -2.47 -0.15 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.40 4.63 8.30 -40.82 -0.34 4.29 16 32 H 0.39 6.29 6.18 -40.82 -0.25 6.04 16 33 H 0.05 1.18 8.14 -51.92 -0.42 0.76 16 34 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 36 H 0.08 2.12 6.07 -51.93 -0.32 1.80 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 2.11 6.07 -51.93 -0.32 1.79 16 40 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 41 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 42 H 0.19 1.09 8.06 -52.49 -0.42 0.66 16 43 H 0.42 0.36 9.11 45.56 0.42 0.78 16 LS Contribution 376.07 15.07 5.67 5.67 Total: -1.00 -31.60 376.07 -8.40 -40.00 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -4.84 Total: 7.61 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -0.71 Total: 3.16 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: -0.22 Total: -50.50 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.80 Total: -21.40 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -2.47 Total: -0.15 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.60 -8.40 -40.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609765998.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.607 kcal (2) G-P(sol) polarization free energy of solvation -31.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds