Wall clock time and date at job start Sat Apr 11 2020 06:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 N 1.46507 * 109.46853 * 240.00230 * 2 1 3 5 5 C 1.34775 * 119.99876 * 85.00265 * 4 2 1 6 6 O 1.21583 * 120.00144 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99585 * 179.97438 * 5 4 2 8 8 C 1.46499 * 119.99665 * 179.72218 * 7 5 4 9 9 C 1.53004 * 109.47198 * 180.27868 * 8 7 5 10 10 C 1.52998 * 109.46876 * 299.99984 * 9 8 7 11 11 C 1.53005 * 109.46795 * 60.00011 * 9 8 7 12 12 C 1.50700 * 109.47208 * 180.02562 * 9 8 7 13 13 H 1.08002 * 119.99770 * 359.97438 * 12 9 8 14 14 C 1.37876 * 119.99720 * 179.97438 * 12 9 8 15 15 N 1.31514 * 120.00513 * 0.02562 * 14 12 9 16 16 Si 1.86809 * 119.99651 * 179.97438 * 14 12 9 17 17 H 1.48495 * 109.47265 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.46830 * 120.00397 * 16 14 12 19 19 H 1.48503 * 109.47108 * 240.00004 * 16 14 12 20 20 C 1.50702 * 109.47105 * 120.00422 * 2 1 3 21 21 N 1.29391 * 124.70851 * 75.02629 * 20 2 1 22 22 C 1.30918 * 117.46796 * 179.97438 * 21 20 2 23 23 C 1.36754 * 113.92934 * 359.97438 * 22 21 20 24 24 C 1.46501 * 126.17658 * 180.02562 * 23 22 21 25 25 O 1.21617 * 120.00078 * 180.02562 * 24 23 22 26 26 O 1.34871 * 120.00213 * 0.02982 * 24 23 22 27 27 S 1.70925 * 124.70236 * 254.71878 * 20 2 1 28 28 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 29 29 H 1.09003 * 109.46809 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 31 31 H 0.97000 * 119.99601 * 264.99604 * 4 2 1 32 32 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 33 33 H 1.09009 * 109.47454 * 300.27637 * 8 7 5 34 34 H 1.08998 * 109.47492 * 60.27932 * 8 7 5 35 35 H 1.08996 * 109.47009 * 60.00253 * 10 9 8 36 36 H 1.09004 * 109.46783 * 179.97438 * 10 9 8 37 37 H 1.08998 * 109.47156 * 300.00070 * 10 9 8 38 38 H 1.09000 * 109.47011 * 60.00556 * 11 9 8 39 39 H 1.09004 * 109.46658 * 180.02562 * 11 9 8 40 40 H 1.08996 * 109.47069 * 299.99740 * 11 9 8 41 41 H 0.96999 * 120.00239 * 180.02562 * 15 14 12 42 42 H 1.07993 * 123.03106 * 179.97438 * 22 21 20 43 43 H 0.96699 * 117.00718 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1470 -0.0182 -2.3572 6 8 1.8575 1.1614 -2.4118 7 7 2.5967 -0.6534 -3.4575 8 6 2.7309 0.0760 -4.7209 9 6 3.2505 -0.8715 -5.8041 10 6 4.6148 -1.4239 -5.3868 11 6 2.2655 -2.0282 -5.9851 12 6 3.3891 -0.1210 -7.1036 13 1 3.1318 0.9268 -7.1521 14 6 3.8442 -0.7721 -8.2305 15 7 4.1570 -2.0481 -8.1715 16 14 4.0154 0.1580 -9.8415 17 1 3.6016 1.5704 -9.6440 18 1 5.4304 0.1152 -10.2898 19 1 3.1506 -0.4722 -10.8712 20 6 2.0323 -0.7105 1.2304 21 7 2.0188 -1.9935 1.3974 22 6 2.4924 -2.4607 2.5250 23 6 2.9433 -1.4936 3.3803 24 6 3.5239 -1.7149 4.7071 25 8 3.8895 -0.7677 5.3766 26 8 3.6531 -2.9691 5.1860 27 16 2.7059 0.0663 2.5959 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.2490 -1.6318 -1.1527 32 1 2.8273 -1.5946 -3.4140 33 1 1.7588 0.4696 -5.0183 34 1 3.4325 0.9001 -4.5920 35 1 4.5150 -1.9666 -4.4468 36 1 4.9848 -2.0992 -6.1583 37 1 5.3165 -0.5998 -5.2578 38 1 1.2935 -1.6346 -6.2825 39 1 2.6359 -2.7034 -6.7565 40 1 2.1657 -2.5709 -5.0452 41 1 4.4776 -2.5061 -8.9643 42 1 2.5240 -3.5146 2.7585 43 1 4.0421 -3.0652 6.0661 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609765998.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:47 Heat of formation + Delta-G solvation = -101.140670 kcal Electronic energy + Delta-G solvation = -26661.984037 eV Core-core repulsion = 22640.296761 eV Total energy + Delta-G solvation = -4021.687276 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.56538 -41.14813 -40.47342 -38.33253 -37.15409 -36.59865 -34.98987 -33.10738 -32.05028 -30.88543 -27.53412 -27.53025 -27.38776 -26.57155 -24.45451 -23.70645 -22.17765 -20.94923 -20.53053 -20.08233 -19.23079 -18.65067 -17.97257 -17.73758 -16.99887 -16.90071 -16.62899 -16.50395 -15.94451 -15.63870 -15.48082 -15.19517 -14.77964 -14.66081 -14.59184 -14.52704 -13.97304 -13.83057 -13.18424 -13.13703 -13.07965 -12.74117 -12.70302 -12.68030 -12.54610 -12.47810 -12.22353 -12.18051 -12.11754 -11.45361 -11.38666 -11.14423 -10.92846 -10.76158 -10.66742 -10.41551 -10.35117 -10.14366 -9.70677 -8.00043 -6.15255 -1.13222 -0.20081 0.40500 1.04532 1.42890 1.47230 1.56369 1.73868 1.87658 2.07518 2.18710 2.48048 2.73529 3.23745 3.39807 3.57992 3.83595 4.07094 4.13740 4.32031 4.45150 4.57904 4.63858 4.74784 4.81890 4.90107 5.03631 5.09349 5.13443 5.21222 5.23698 5.39230 5.41807 5.42271 5.64781 5.70169 5.70356 6.02908 6.18038 6.25079 6.36963 6.46382 6.83092 6.89579 7.11904 7.52357 7.60861 8.99018 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.023819 B = 0.002025 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.256308 B =13824.945323 C =14274.055415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.237 3.763 3 H 0.105 0.895 4 N -0.726 5.726 5 C 0.703 3.297 6 O -0.632 6.632 7 N -0.725 5.725 8 C 0.168 3.832 9 C 0.051 3.949 10 C -0.120 4.120 11 C -0.120 4.120 12 C -0.524 4.524 13 H 0.046 0.954 14 C 0.026 3.974 15 N -0.900 5.900 16 Si 0.945 3.055 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.282 1.282 20 C 0.040 3.960 21 N -0.483 5.483 22 C 0.143 3.857 23 C -0.326 4.326 24 C 0.576 3.424 25 O -0.546 6.546 26 O -0.493 6.493 27 S 0.286 5.714 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.412 0.588 32 H 0.405 0.595 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.035 0.965 36 H 0.061 0.939 37 H 0.018 0.982 38 H 0.019 0.981 39 H 0.061 0.939 40 H 0.036 0.964 41 H 0.259 0.741 42 H 0.218 0.782 43 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.844 -4.113 26.415 27.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.128 3.872 3 H 0.123 0.877 4 N -0.384 5.384 5 C 0.403 3.597 6 O -0.513 6.513 7 N -0.380 5.380 8 C 0.044 3.956 9 C 0.050 3.950 10 C -0.178 4.178 11 C -0.177 4.177 12 C -0.563 4.563 13 H 0.064 0.936 14 C -0.173 4.173 15 N -0.539 5.539 16 Si 0.772 3.228 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.208 1.208 20 C -0.233 4.233 21 N -0.197 5.197 22 C -0.018 4.018 23 C -0.448 4.448 24 C 0.420 3.580 25 O -0.439 6.439 26 O -0.308 6.308 27 S 0.546 5.454 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.248 0.752 32 H 0.241 0.759 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.037 0.963 38 H 0.038 0.962 39 H 0.080 0.920 40 H 0.055 0.945 41 H 0.069 0.931 42 H 0.235 0.765 43 H 0.303 0.697 Dipole moment (debyes) X Y Z Total from point charges -4.108 -2.096 25.848 26.256 hybrid contribution 0.706 -1.316 -0.348 1.533 sum -3.402 -3.412 25.500 25.951 Atomic orbital electron populations 1.22161 0.91741 1.03645 1.03622 1.19337 0.95583 0.94879 0.77405 0.87670 1.44909 1.71847 1.14298 1.07360 1.16032 0.78181 0.84658 0.80847 1.90869 1.59131 1.16021 1.85298 1.45216 1.69583 1.14418 1.08783 1.21141 0.98694 0.94294 0.81502 1.18374 0.92813 0.92452 0.91366 1.21664 0.97835 0.99468 0.98822 1.21658 0.97238 0.99132 0.99717 1.21295 1.44010 0.96077 0.94889 0.93583 1.25458 0.95052 0.95645 1.01159 1.69918 1.45042 1.09500 1.29408 0.85711 0.77474 0.79017 0.80620 1.19915 1.20873 1.20833 1.27649 1.00388 0.93615 1.01608 1.66115 1.19124 1.11805 1.22680 1.23087 0.90974 1.02351 0.85435 1.25141 1.19649 0.98865 1.01186 1.18941 0.73964 0.81143 0.83996 1.90981 1.48786 1.44177 1.59927 1.84511 1.76806 1.27958 1.41483 1.84239 1.49839 1.04891 1.06467 0.91974 0.91083 0.89264 0.75173 0.75892 0.94312 0.94399 0.94590 0.91993 0.96294 0.96225 0.92028 0.94528 0.93113 0.76537 0.69674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.47 71.98 0.68 -2.08 16 2 C 0.24 4.83 3.07 44.24 0.14 4.96 16 3 H 0.11 2.29 7.57 -2.39 -0.02 2.28 16 4 N -0.73 -17.53 5.07 -461.41 -2.34 -19.87 16 5 C 0.70 23.17 8.53 179.05 1.53 24.70 16 6 O -0.63 -25.44 16.01 -3.98 -0.06 -25.50 16 7 N -0.73 -24.58 4.96 -478.53 -2.37 -26.95 16 8 C 0.17 7.05 4.50 86.38 0.39 7.44 16 9 C 0.05 2.31 0.50 -52.93 -0.03 2.29 16 10 C -0.12 -5.29 8.08 71.98 0.58 -4.71 16 11 C -0.12 -5.25 8.08 71.98 0.58 -4.67 16 12 C -0.52 -27.46 8.01 25.60 0.21 -27.25 16 13 H 0.05 2.46 7.74 -2.91 -0.02 2.44 16 14 C 0.03 1.38 5.15 84.65 0.44 1.82 16 15 N -0.90 -47.77 9.35 21.45 0.20 -47.57 16 16 Si 0.94 42.47 29.54 68.60 2.03 44.50 16 17 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 20 C 0.04 0.70 6.20 88.47 0.55 1.25 16 21 N -0.48 -8.16 10.10 -189.54 -1.92 -10.08 16 22 C 0.14 1.94 11.20 84.48 0.95 2.88 16 23 C -0.33 -5.00 6.51 24.08 0.16 -4.85 16 24 C 0.58 8.83 8.30 69.98 0.58 9.41 16 25 O -0.55 -11.83 17.75 19.45 0.35 -11.49 16 26 O -0.49 -3.96 13.23 -57.85 -0.77 -4.73 16 27 S 0.29 4.48 23.00 -56.49 -1.30 3.18 16 28 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 30 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.41 8.59 8.30 -92.71 -0.77 7.82 16 32 H 0.40 12.03 6.18 -92.71 -0.57 11.46 16 33 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 34 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.04 1.32 6.86 -2.39 -0.02 1.31 16 36 H 0.06 3.05 6.07 -2.38 -0.01 3.03 16 37 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.06 3.02 6.07 -2.38 -0.01 3.01 16 40 H 0.04 1.34 6.86 -2.39 -0.02 1.32 16 41 H 0.26 13.25 8.31 -92.71 -0.77 12.48 16 42 H 0.22 1.72 8.06 -2.91 -0.02 1.70 16 43 H 0.44 -0.40 9.11 -74.06 -0.67 -1.08 16 Total: -1.00 -67.63 376.07 -0.37 -68.00 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -0.93 Total: 19.33 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: 6.74 Total: 11.18 kcal Atomic # 7 Polarization: -98.03 SS G_CDS: -6.43 Total: -104.46 kcal Atomic # 8 Polarization: -41.24 SS G_CDS: -0.48 Total: -41.72 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Atomic # 16 Polarization: 4.48 SS G_CDS: -1.30 Total: 3.18 kcal Total: -67.63 -0.37 -68.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609765998.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.142 kcal (2) G-P(sol) polarization free energy of solvation -67.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds