Wall clock time and date at job start Sat Apr 11 2020 06:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46495 * 109.47219 * 2 1 4 4 C 1.34770 * 120.00007 * 179.97438 * 3 2 1 5 5 O 1.21586 * 120.00316 * 359.97438 * 4 3 2 6 6 N 1.34782 * 119.99974 * 179.97438 * 4 3 2 7 7 C 1.46506 * 119.99781 * 180.02562 * 6 4 3 8 8 N 1.40094 * 119.99977 * 0.02562 * 6 4 3 9 9 S 1.65599 * 120.00216 * 90.00027 * 8 6 4 10 10 O 1.42100 * 106.40241 * 306.45978 * 9 8 6 11 11 O 1.42096 * 106.40379 * 173.53600 * 9 8 6 12 12 C 1.76199 * 107.21658 * 59.99894 * 9 8 6 13 13 C 1.38238 * 120.00251 * 269.72679 * 12 9 8 14 14 C 1.38228 * 120.00121 * 179.76592 * 13 12 9 15 15 C 1.38234 * 120.00010 * 0.50740 * 14 13 12 16 16 C 1.50706 * 119.99834 * 179.72215 * 15 14 13 17 17 C 1.50701 * 109.47197 * 270.02419 * 16 15 14 18 18 H 1.07992 * 120.00089 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99824 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00175 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00076 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46982 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46919 * 119.99914 * 21 19 17 24 24 H 1.48497 * 109.47331 * 240.00202 * 21 19 17 25 25 C 1.38229 * 119.99860 * 359.74632 * 15 14 13 26 26 C 1.38234 * 120.00019 * 90.00010 * 12 9 8 27 27 H 1.09000 * 109.46876 * 60.00329 * 1 2 3 28 28 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47012 * 300.00058 * 1 2 3 30 30 H 1.09002 * 109.47058 * 239.99389 * 2 1 3 31 31 H 1.09008 * 109.46786 * 119.99975 * 2 1 3 32 32 H 0.97004 * 119.99726 * 359.97438 * 3 2 1 33 33 H 1.08996 * 109.46937 * 269.99921 * 7 6 4 34 34 H 1.09001 * 109.47074 * 30.00392 * 7 6 4 35 35 H 1.09002 * 109.46932 * 150.00079 * 7 6 4 36 36 H 0.96996 * 120.00073 * 270.00000 * 8 6 4 37 37 H 1.08004 * 119.99572 * 0.02562 * 13 12 9 38 38 H 1.08004 * 120.00393 * 180.23620 * 14 13 12 39 39 H 1.08991 * 109.47127 * 30.02677 * 16 15 14 40 40 H 1.09005 * 109.46919 * 150.02736 * 16 15 14 41 41 H 0.96999 * 120.00028 * 179.97438 * 20 19 17 42 42 H 1.08005 * 119.99920 * 179.97438 * 25 15 14 43 43 H 1.07999 * 120.00005 * 0.02562 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6274 0.0005 5 8 4.1336 0.7033 0.0015 6 7 3.7927 2.8981 0.0000 7 6 5.2331 3.1658 0.0000 8 7 2.8823 3.9630 -0.0005 9 16 2.3441 4.5930 1.4332 10 8 1.8362 3.5002 2.1862 11 8 1.5682 5.7366 1.1029 12 6 3.7560 5.1848 2.3055 13 6 4.4350 4.3475 3.1709 14 6 5.5455 4.8103 3.8515 15 6 5.9710 6.1136 3.6748 16 6 7.1780 6.6201 4.4217 17 6 6.7434 7.2065 5.7401 18 1 5.6978 7.2117 6.0104 19 6 7.6806 7.7366 6.6012 20 7 8.9539 7.7308 6.2719 21 14 7.1419 8.4642 8.2352 22 1 5.6670 8.3498 8.3657 23 1 7.7954 7.7256 9.3454 24 1 7.5350 9.8950 8.2935 25 6 5.2889 6.9525 2.8135 26 6 4.1815 6.4881 2.1288 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8901 32 1 1.3880 2.1185 -0.0004 33 1 5.5902 3.2326 1.0276 34 1 5.7529 2.3569 -0.5135 35 1 5.4278 4.1070 -0.5142 36 1 2.5673 4.3312 -0.8407 37 1 4.1002 3.3304 3.3120 38 1 6.0783 4.1550 4.5248 39 1 7.8671 5.7948 4.6006 40 1 7.6762 7.3875 3.8292 41 1 9.6132 8.1041 6.8776 42 1 5.6211 7.9709 2.6757 43 1 3.6482 7.1438 1.4564 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001621999310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:56 Heat of formation + Delta-G solvation = -49.475328 kcal Electronic energy + Delta-G solvation = -27880.988408 eV Core-core repulsion = 23861.541509 eV Total energy + Delta-G solvation = -4019.446899 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.39428 -38.91041 -37.41249 -36.69713 -36.06096 -35.53754 -33.74074 -31.64928 -31.15985 -30.80087 -30.65309 -27.51168 -26.61307 -23.79922 -23.05262 -22.44284 -21.32338 -20.99597 -19.87176 -19.26708 -18.21148 -17.43487 -17.00756 -16.48444 -15.88614 -15.84307 -15.27144 -15.14564 -14.64021 -14.58787 -14.51393 -14.41286 -13.93198 -13.29553 -13.18962 -13.10891 -12.82247 -12.62336 -12.35701 -12.29916 -12.28713 -12.16682 -12.08313 -11.79499 -11.74087 -11.53888 -11.35811 -10.97538 -10.96699 -10.57401 -10.54944 -10.17959 -9.78762 -9.68364 -9.51666 -9.04376 -8.66384 -8.57715 -8.46657 -6.20572 -4.25763 0.06478 1.20161 1.71383 1.80419 2.81783 2.89237 3.21000 3.29224 3.33955 3.46998 3.79066 4.05412 4.32979 4.34727 4.71186 4.85507 5.02799 5.09168 5.09851 5.15171 5.17360 5.33966 5.50459 5.64197 5.65167 5.67085 5.68704 5.71808 5.78873 5.83508 6.15488 6.21905 6.24326 6.24600 6.42742 6.69836 6.76251 6.84294 7.23191 7.36292 7.53422 7.68980 7.74506 8.08888 8.24508 8.79238 9.39558 10.89464 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.019624 B = 0.002750 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.486156 B =10180.937807 C =10484.362262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.131 3.869 3 N -0.733 5.733 4 C 0.717 3.283 5 O -0.573 6.573 6 N -0.414 5.414 7 C 0.094 3.906 8 N -0.912 5.912 9 S 2.687 3.313 10 O -0.947 6.947 11 O -0.950 6.950 12 C -0.701 4.701 13 C -0.017 4.017 14 C -0.144 4.144 15 C 0.032 3.968 16 C 0.038 3.962 17 C -0.518 4.518 18 H 0.059 0.941 19 C 0.061 3.939 20 N -0.891 5.891 21 Si 0.898 3.102 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.145 4.145 26 C -0.021 4.021 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.397 0.603 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.418 0.582 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.036 0.964 40 H 0.035 0.965 41 H 0.264 0.736 42 H 0.130 0.870 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.440 -10.099 -16.220 23.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.007 3.993 3 N -0.389 5.389 4 C 0.418 3.582 5 O -0.447 6.447 6 N -0.248 5.248 7 C -0.048 4.048 8 N -0.763 5.763 9 S 2.780 3.220 10 O -0.936 6.936 11 O -0.939 6.939 12 C -0.792 4.792 13 C -0.037 4.037 14 C -0.163 4.163 15 C 0.032 3.968 16 C 0.001 3.999 17 C -0.556 4.556 18 H 0.078 0.922 19 C -0.141 4.141 20 N -0.529 5.529 21 Si 0.726 3.274 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.164 4.164 26 C -0.040 4.040 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.231 0.769 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.099 0.901 36 H 0.256 0.744 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.148 0.852 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -13.519 -10.860 -15.748 23.424 hybrid contribution 0.114 1.373 0.711 1.550 sum -13.405 -9.487 -15.036 22.266 Atomic orbital electron populations 1.22038 0.94402 1.03284 1.02826 1.21219 0.94094 0.81456 1.02489 1.45100 1.05235 1.09479 1.79052 1.15821 0.83246 0.81481 0.77675 1.90975 1.55102 1.40404 1.58212 1.46147 1.01876 0.96446 1.80346 1.22062 0.75880 1.03229 1.03653 1.55827 1.55136 1.40032 1.25295 1.02296 0.74021 0.73325 0.72354 1.93598 1.77243 1.53773 1.69012 1.93624 1.67325 1.49738 1.83180 1.29989 1.24968 1.04813 1.19434 1.20767 0.92875 0.98074 0.91937 1.21259 0.97447 0.96688 1.00929 1.21153 0.95303 0.91908 0.88469 1.18562 0.89438 0.97248 0.94602 1.20990 0.93902 1.39550 1.01130 0.92238 1.25003 0.94833 0.95716 0.98587 1.69951 1.00624 1.45316 1.36987 0.86426 0.78975 0.78837 0.83194 1.19572 1.20775 1.20785 1.21246 0.96235 1.00540 0.98373 1.20762 0.94445 0.92572 0.96268 0.92091 0.90566 0.91494 0.91495 0.91208 0.76894 0.91332 0.88872 0.90127 0.74358 0.85343 0.85214 0.94610 0.94636 0.92640 0.85210 0.85204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.04 10.03 37.16 0.37 -0.67 16 2 C 0.13 1.17 6.39 -4.04 -0.03 1.14 16 3 N -0.73 -7.76 5.43 -65.22 -0.35 -8.11 16 4 C 0.72 9.16 8.40 -86.92 -0.73 8.43 16 5 O -0.57 -8.98 15.92 5.29 0.08 -8.90 16 6 N -0.41 -4.46 3.53 -72.07 -0.25 -4.71 16 7 C 0.09 0.94 10.74 59.85 0.64 1.58 16 8 N -0.91 -8.31 5.30 60.35 0.32 -7.99 16 9 S 2.69 33.24 5.93 -107.50 -0.64 32.61 16 10 O -0.95 -13.75 16.79 -57.17 -0.96 -14.71 16 11 O -0.95 -13.26 17.28 -57.17 -0.99 -14.25 16 12 C -0.70 -10.21 5.97 -39.58 -0.24 -10.45 16 13 C -0.02 -0.26 8.56 -39.58 -0.34 -0.60 16 14 C -0.14 -2.56 9.70 -39.59 -0.38 -2.95 16 15 C 0.03 0.63 5.07 -104.62 -0.53 0.10 16 16 C 0.04 0.91 5.10 -29.03 -0.15 0.76 16 17 C -0.52 -13.76 9.09 -34.44 -0.31 -14.07 16 18 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -25.17 13.29 55.43 0.74 -24.43 16 21 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 C -0.14 -2.52 9.70 -39.59 -0.38 -2.90 16 26 C -0.02 -0.31 9.52 -39.58 -0.38 -0.69 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 32 H 0.40 3.65 7.11 -40.82 -0.29 3.36 16 33 H 0.07 0.75 7.15 -51.93 -0.37 0.38 16 34 H 0.09 0.91 7.42 -51.93 -0.39 0.52 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.42 2.50 8.96 -176.25 -1.58 0.92 16 37 H 0.13 1.85 7.61 -52.48 -0.40 1.45 16 38 H 0.13 2.23 8.06 -52.48 -0.42 1.81 16 39 H 0.04 0.89 8.08 -51.93 -0.42 0.47 16 40 H 0.04 0.88 8.09 -51.93 -0.42 0.46 16 41 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.13 2.14 8.06 -52.48 -0.42 1.72 16 43 H 0.13 1.62 7.62 -52.49 -0.40 1.22 16 LS Contribution 381.14 15.07 5.74 5.74 Total: -1.00 -33.92 381.14 -11.07 -44.99 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -7.19 Total: 2.68 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: -2.55 Total: -18.76 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: 0.45 Total: -45.25 kcal Atomic # 8 Polarization: -35.99 SS G_CDS: -1.86 Total: -37.86 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 33.24 SS G_CDS: -0.64 Total: 32.61 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.92 -11.07 -44.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001621999310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.482 kcal (2) G-P(sol) polarization free energy of solvation -33.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds