Wall clock time and date at job start Sat Apr 11 2020 06:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46495 * 109.47219 * 2 1 4 4 C 1.34770 * 120.00007 * 179.97438 * 3 2 1 5 5 O 1.21586 * 120.00316 * 359.97438 * 4 3 2 6 6 N 1.34782 * 119.99974 * 179.97438 * 4 3 2 7 7 C 1.46506 * 119.99781 * 180.02562 * 6 4 3 8 8 N 1.40094 * 119.99977 * 0.02562 * 6 4 3 9 9 S 1.65599 * 120.00216 * 90.00027 * 8 6 4 10 10 O 1.42100 * 106.40241 * 306.45978 * 9 8 6 11 11 O 1.42096 * 106.40379 * 173.53600 * 9 8 6 12 12 C 1.76199 * 107.21658 * 59.99894 * 9 8 6 13 13 C 1.38238 * 120.00251 * 269.72679 * 12 9 8 14 14 C 1.38228 * 120.00121 * 179.76592 * 13 12 9 15 15 C 1.38234 * 120.00010 * 0.50740 * 14 13 12 16 16 C 1.50706 * 119.99834 * 179.72215 * 15 14 13 17 17 C 1.50701 * 109.47197 * 270.02419 * 16 15 14 18 18 H 1.07992 * 120.00089 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99824 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00175 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00076 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46982 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46919 * 119.99914 * 21 19 17 24 24 H 1.48497 * 109.47331 * 240.00202 * 21 19 17 25 25 C 1.38229 * 119.99860 * 359.74632 * 15 14 13 26 26 C 1.38234 * 120.00019 * 90.00010 * 12 9 8 27 27 H 1.09000 * 109.46876 * 60.00329 * 1 2 3 28 28 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47012 * 300.00058 * 1 2 3 30 30 H 1.09002 * 109.47058 * 239.99389 * 2 1 3 31 31 H 1.09008 * 109.46786 * 119.99975 * 2 1 3 32 32 H 0.97004 * 119.99726 * 359.97438 * 3 2 1 33 33 H 1.08996 * 109.46937 * 269.99921 * 7 6 4 34 34 H 1.09001 * 109.47074 * 30.00392 * 7 6 4 35 35 H 1.09002 * 109.46932 * 150.00079 * 7 6 4 36 36 H 0.96996 * 120.00073 * 270.00000 * 8 6 4 37 37 H 1.08004 * 119.99572 * 0.02562 * 13 12 9 38 38 H 1.08004 * 120.00393 * 180.23620 * 14 13 12 39 39 H 1.08991 * 109.47127 * 30.02677 * 16 15 14 40 40 H 1.09005 * 109.46919 * 150.02736 * 16 15 14 41 41 H 0.96999 * 120.00028 * 179.97438 * 20 19 17 42 42 H 1.08005 * 119.99920 * 179.97438 * 25 15 14 43 43 H 1.07999 * 120.00005 * 0.02562 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6274 0.0005 5 8 4.1336 0.7033 0.0015 6 7 3.7927 2.8981 0.0000 7 6 5.2331 3.1658 0.0000 8 7 2.8823 3.9630 -0.0005 9 16 2.3441 4.5930 1.4332 10 8 1.8362 3.5002 2.1862 11 8 1.5682 5.7366 1.1029 12 6 3.7560 5.1848 2.3055 13 6 4.4350 4.3475 3.1709 14 6 5.5455 4.8103 3.8515 15 6 5.9710 6.1136 3.6748 16 6 7.1780 6.6201 4.4217 17 6 6.7434 7.2065 5.7401 18 1 5.6978 7.2117 6.0104 19 6 7.6806 7.7366 6.6012 20 7 8.9539 7.7308 6.2719 21 14 7.1419 8.4642 8.2352 22 1 5.6670 8.3498 8.3657 23 1 7.7954 7.7256 9.3454 24 1 7.5350 9.8950 8.2935 25 6 5.2889 6.9525 2.8135 26 6 4.1815 6.4881 2.1288 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8901 32 1 1.3880 2.1185 -0.0004 33 1 5.5902 3.2326 1.0276 34 1 5.7529 2.3569 -0.5135 35 1 5.4278 4.1070 -0.5142 36 1 2.5673 4.3312 -0.8407 37 1 4.1002 3.3304 3.3120 38 1 6.0783 4.1550 4.5248 39 1 7.8671 5.7948 4.6006 40 1 7.6762 7.3875 3.8292 41 1 9.6132 8.1041 6.8776 42 1 5.6211 7.9709 2.6757 43 1 3.6482 7.1438 1.4564 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001621999310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:55 Heat of formation + Delta-G solvation = -73.723731 kcal Electronic energy + Delta-G solvation = -27882.039898 eV Core-core repulsion = 23861.541509 eV Total energy + Delta-G solvation = -4020.498389 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.33316 -40.26898 -38.51092 -37.60339 -37.16638 -36.39905 -35.60509 -33.34846 -32.08558 -31.93386 -31.49809 -29.26921 -27.41602 -25.60995 -23.76152 -23.72960 -22.53592 -22.21242 -20.86469 -20.19806 -19.26124 -18.64070 -18.47686 -17.88800 -16.96809 -16.84491 -16.72276 -16.27512 -15.98928 -15.76274 -15.48692 -15.31963 -15.28095 -14.65801 -14.47894 -14.14628 -14.07761 -13.69215 -13.45666 -13.41596 -13.35074 -13.32909 -13.27465 -13.10009 -12.70012 -12.69193 -12.68099 -12.36839 -12.32557 -12.06885 -12.05307 -11.65657 -11.46929 -11.10829 -10.65901 -10.47684 -9.99979 -9.97682 -9.82488 -8.27361 -6.39765 -0.97958 -0.10841 0.39025 0.86434 1.37083 1.38929 1.51110 1.90074 1.92446 2.32293 2.41442 2.70318 2.96696 3.05695 3.28500 3.85664 3.94911 4.10131 4.15253 4.26640 4.31013 4.43911 4.46997 4.54332 4.54829 4.79570 4.87814 4.89822 4.90269 4.97838 5.08254 5.08863 5.24647 5.26362 5.27171 5.32827 5.41227 5.45805 5.67425 5.86406 5.90569 5.92809 6.09397 6.72586 6.84055 7.29474 7.31457 8.82866 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.019624 B = 0.002750 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.486156 B =10180.937807 C =10484.362262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.125 3.875 3 N -0.728 5.728 4 C 0.710 3.290 5 O -0.607 6.607 6 N -0.411 5.411 7 C 0.089 3.911 8 N -0.892 5.892 9 S 2.719 3.281 10 O -0.964 6.964 11 O -0.956 6.956 12 C -0.698 4.698 13 C -0.013 4.013 14 C -0.153 4.153 15 C 0.004 3.996 16 C 0.047 3.953 17 C -0.532 4.532 18 H 0.054 0.946 19 C 0.009 3.991 20 N -0.925 5.925 21 Si 0.963 3.037 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.275 1.275 25 C -0.152 4.152 26 C -0.011 4.011 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.404 0.596 33 H 0.056 0.944 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.439 0.561 37 H 0.141 0.859 38 H 0.125 0.875 39 H 0.012 0.988 40 H 0.016 0.984 41 H 0.267 0.733 42 H 0.133 0.867 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.982 -9.930 -17.388 25.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.001 3.999 3 N -0.384 5.384 4 C 0.410 3.590 5 O -0.484 6.484 6 N -0.245 5.245 7 C -0.053 4.053 8 N -0.748 5.748 9 S 2.808 3.192 10 O -0.953 6.953 11 O -0.945 6.945 12 C -0.787 4.787 13 C -0.032 4.032 14 C -0.172 4.172 15 C 0.003 3.997 16 C 0.010 3.990 17 C -0.570 4.570 18 H 0.072 0.928 19 C -0.190 4.190 20 N -0.565 5.565 21 Si 0.788 3.212 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.200 1.200 25 C -0.171 4.171 26 C -0.030 4.030 27 H 0.092 0.908 28 H 0.111 0.889 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.240 0.760 33 H 0.075 0.925 34 H 0.111 0.889 35 H 0.123 0.877 36 H 0.282 0.718 37 H 0.159 0.841 38 H 0.143 0.857 39 H 0.030 0.970 40 H 0.034 0.966 41 H 0.076 0.924 42 H 0.151 0.849 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -16.073 -10.656 -16.919 25.655 hybrid contribution 0.830 1.246 0.961 1.779 sum -15.243 -9.410 -15.958 23.991 Atomic orbital electron populations 1.22013 0.92119 1.04529 1.03144 1.21378 0.95959 0.80592 1.01959 1.45191 1.04632 1.10459 1.78092 1.16050 0.83674 0.81634 0.77654 1.90950 1.56079 1.41567 1.59785 1.46122 1.02282 0.96263 1.79854 1.22183 0.75285 1.04561 1.03302 1.55336 1.54835 1.39175 1.25429 1.01511 0.72814 0.72666 0.72232 1.93586 1.77252 1.54294 1.70166 1.93619 1.67189 1.50310 1.83372 1.30490 1.24937 1.04604 1.18650 1.20852 0.92036 0.98810 0.91524 1.21234 0.98431 0.96032 1.01535 1.20802 0.95062 0.93344 0.90448 1.18279 0.90889 0.95714 0.94119 1.21314 0.93659 1.39468 1.02523 0.92768 1.25851 0.94852 0.96154 1.02113 1.70057 1.01673 1.46355 1.38376 0.85425 0.78638 0.78232 0.78947 1.19132 1.20249 1.20026 1.21314 0.96985 1.00478 0.98289 1.21050 0.93316 0.93008 0.95658 0.90778 0.88927 0.92061 0.91218 0.92639 0.76041 0.92504 0.88858 0.87683 0.71846 0.84081 0.85723 0.96975 0.96572 0.92409 0.84909 0.81977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 10.03 71.98 0.72 -0.91 16 2 C 0.12 2.05 6.39 86.38 0.55 2.60 16 3 N -0.73 -14.09 5.43 -478.53 -2.60 -16.69 16 4 C 0.71 17.12 8.40 179.05 1.50 18.62 16 5 O -0.61 -18.75 15.92 -3.99 -0.06 -18.82 16 6 N -0.41 -8.00 3.53 -500.18 -1.77 -9.77 16 7 C 0.09 1.63 10.74 127.77 1.37 3.00 16 8 N -0.89 -13.44 5.30 37.02 0.20 -13.24 16 9 S 2.72 58.98 5.93 -56.49 -0.33 58.64 16 10 O -0.96 -25.49 16.79 -128.00 -2.15 -27.64 16 11 O -0.96 -23.12 17.28 -128.00 -2.21 -25.33 16 12 C -0.70 -18.78 5.97 22.27 0.13 -18.65 16 13 C -0.01 -0.39 8.56 22.27 0.19 -0.20 16 14 C -0.15 -5.54 9.70 22.27 0.22 -5.32 16 15 C 0.00 0.15 5.07 -19.87 -0.10 0.05 16 16 C 0.05 2.34 5.10 29.10 0.15 2.49 16 17 C -0.53 -29.07 9.09 25.60 0.23 -28.84 16 18 H 0.05 2.95 7.74 -2.91 -0.02 2.92 16 19 C 0.01 0.51 5.46 84.65 0.46 0.97 16 20 N -0.93 -53.68 13.29 21.45 0.28 -53.40 16 21 Si 0.96 43.17 29.54 68.60 2.03 45.20 16 22 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 23 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 25 C -0.15 -5.19 9.70 22.27 0.22 -4.98 16 26 C -0.01 -0.31 9.52 22.27 0.21 -0.10 16 27 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.09 0.65 8.14 -2.38 -0.02 0.64 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.40 6.41 7.11 -92.70 -0.66 5.75 16 33 H 0.06 1.19 7.15 -2.39 -0.02 1.17 16 34 H 0.09 1.73 7.42 -2.39 -0.02 1.72 16 35 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.44 3.54 8.96 -217.37 -1.95 1.59 16 37 H 0.14 3.89 7.61 -2.91 -0.02 3.87 16 38 H 0.12 4.49 8.06 -2.91 -0.02 4.46 16 39 H 0.01 0.64 8.08 -2.39 -0.02 0.62 16 40 H 0.02 0.84 8.09 -2.38 -0.02 0.82 16 41 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 42 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 43 H 0.16 3.41 7.62 -2.91 -0.02 3.39 16 Total: -1.00 -73.81 381.14 -2.32 -76.13 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -1.56 Total: 16.17 kcal Atomic # 6 Polarization: -37.12 SS G_CDS: 5.86 Total: -31.26 kcal Atomic # 7 Polarization: -89.22 SS G_CDS: -3.88 Total: -93.10 kcal Atomic # 8 Polarization: -67.36 SS G_CDS: -4.43 Total: -71.78 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: 58.98 SS G_CDS: -0.33 Total: 58.64 kcal Total: -73.81 -2.32 -76.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001621999310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.406 kcal (2) G-P(sol) polarization free energy of solvation -73.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds