Wall clock time and date at job start Sat Apr 11 2020 06:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81400 * 109.47249 * 2 1 4 4 O 1.42099 * 108.57664 * 65.51002 * 3 2 1 5 5 O 1.42100 * 108.57736 * 294.48387 * 3 2 1 6 6 C 1.81399 * 101.91852 * 180.02562 * 3 2 1 7 7 C 1.53003 * 109.46919 * 180.02562 * 6 3 2 8 8 C 1.52995 * 109.47362 * 179.97438 * 7 6 3 9 9 N 1.46493 * 109.47496 * 179.97438 * 8 7 6 10 10 C 1.34777 * 120.00657 * 179.97438 * 9 8 7 11 11 O 1.21583 * 119.99443 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00506 * 180.27476 * 10 9 8 13 13 C 1.39460 * 120.00060 * 175.17765 * 12 10 9 14 14 C 1.38639 * 119.64954 * 186.28818 * 13 12 10 15 15 C 1.40821 * 118.67929 * 179.97438 * 14 13 12 16 16 C 1.41541 * 121.00269 * 179.97438 * 15 14 13 17 17 H 1.07996 * 119.99731 * 201.15287 * 16 15 14 18 18 C 1.40030 * 119.99880 * 21.14210 * 16 15 14 19 19 N 1.30743 * 119.99956 * 12.11135 * 18 16 15 20 20 Si 1.86801 * 120.00104 * 192.10739 * 18 16 15 21 21 H 1.48490 * 109.47249 * 90.00250 * 20 18 16 22 22 H 1.48505 * 109.46978 * 210.00456 * 20 18 16 23 23 H 1.48498 * 109.46840 * 329.99990 * 20 18 16 24 24 C 1.41167 * 118.00046 * 359.97438 * 15 14 13 25 25 C 1.36591 * 119.12813 * 0.02562 * 24 15 14 26 26 N 1.32062 * 121.26005 * 359.73808 * 25 24 15 27 27 H 1.09003 * 109.47427 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47120 * 300.00109 * 1 2 3 29 29 H 1.09007 * 109.47240 * 60.00285 * 1 2 3 30 30 H 1.09007 * 109.47222 * 239.99654 * 2 1 3 31 31 H 1.09001 * 109.46905 * 120.00351 * 2 1 3 32 32 H 1.08999 * 109.47859 * 60.00117 * 6 3 2 33 33 H 1.09002 * 109.47250 * 299.99598 * 6 3 2 34 34 H 1.08999 * 109.47420 * 59.99499 * 7 6 3 35 35 H 1.09002 * 109.46677 * 299.99760 * 7 6 3 36 36 H 1.08999 * 109.47239 * 59.99416 * 8 7 6 37 37 H 1.09002 * 109.47051 * 299.99558 * 8 7 6 38 38 H 0.97000 * 119.99966 * 359.97438 * 9 8 7 39 39 H 0.97000 * 120.00020 * 355.18674 * 12 10 9 40 40 H 1.07998 * 120.66226 * 0.02562 * 14 13 12 41 41 H 0.96996 * 120.00359 * 179.97438 * 19 18 16 42 42 H 1.08000 * 120.43442 * 179.97438 * 24 15 14 43 43 H 1.07999 * 119.36721 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.7592 2.3232 1.2258 5 8 1.7593 2.3231 -1.2258 6 6 3.9329 1.4718 -0.0008 7 6 4.6281 2.8348 -0.0002 8 6 6.1448 2.6337 -0.0003 9 7 6.8104 3.9387 -0.0003 10 6 8.1564 4.0088 0.0001 11 8 8.8181 2.9889 0.0002 12 7 8.7687 5.2095 0.0057 13 6 10.1576 5.2834 0.1077 14 6 10.7704 6.5194 0.2445 15 6 12.1740 6.5703 0.3463 16 6 12.8505 7.8056 0.4869 17 1 13.8958 7.8815 0.2264 18 6 12.1643 8.9293 0.9637 19 7 10.9795 8.7931 1.4994 20 14 12.9418 10.6229 0.8344 21 1 12.5591 11.2459 -0.4580 22 1 12.4649 11.4733 1.9545 23 1 14.4197 10.4956 0.9041 24 6 12.8861 5.3521 0.3040 25 6 12.1947 4.1822 0.1667 26 7 10.8771 4.1712 0.0786 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 4.2253 0.9148 -0.8909 33 1 4.2260 0.9146 0.8890 34 1 4.3357 3.3914 0.8901 35 1 4.3351 3.3923 -0.8898 36 1 6.4375 2.0769 -0.8904 37 1 6.4374 2.0763 0.8896 38 1 6.2825 4.7525 -0.0008 39 1 8.2434 6.0221 -0.0612 40 1 10.1830 7.4252 0.2732 41 1 10.5043 9.5714 1.8299 42 1 13.9636 5.3454 0.3783 43 1 12.7356 3.2480 0.1343 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001626732263.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:58 Heat of formation + Delta-G solvation = -66.052057 kcal Electronic energy + Delta-G solvation = -26046.539538 eV Core-core repulsion = 22026.373818 eV Total energy + Delta-G solvation = -4020.165720 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.80116 -38.10261 -37.38170 -36.47748 -35.96295 -34.27821 -33.73266 -33.68300 -32.77175 -30.47514 -28.72666 -26.80171 -25.99643 -24.55143 -22.35213 -21.90603 -21.53363 -20.06899 -19.27413 -18.05972 -17.68922 -17.39393 -16.88629 -16.39975 -15.94882 -15.87780 -15.32509 -14.93394 -14.66276 -14.55039 -14.23893 -14.15230 -13.82393 -13.47157 -13.17396 -13.14600 -12.99437 -12.76688 -12.60123 -12.47963 -12.39280 -12.28281 -12.26666 -12.09140 -11.48764 -11.37874 -11.22126 -11.18789 -10.89487 -10.75396 -10.27777 -10.09244 -9.77376 -9.59921 -9.39461 -8.85562 -7.97719 -7.72178 -6.98912 -6.75038 -4.62899 -0.50990 2.28285 2.70571 2.81559 2.90949 3.01225 3.04659 3.21582 3.26477 3.53294 3.83875 3.86334 4.07809 4.10181 4.13525 4.37490 4.55502 4.65943 4.66165 4.70543 4.94782 5.06802 5.07948 5.12815 5.29361 5.40811 5.70196 5.73928 5.74799 5.98023 6.55352 6.62096 6.66547 6.82288 6.94394 7.17866 7.28353 7.45466 7.50939 7.89015 8.11876 8.38873 8.48071 8.74379 8.76618 9.17471 9.75519 10.06520 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.023165 B = 0.001776 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.427991 B =15762.133824 C =16728.981274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.615 4.615 3 S 2.417 3.583 4 O -0.936 6.936 5 O -0.936 6.936 6 C -0.609 4.609 7 C -0.125 4.125 8 C 0.150 3.850 9 N -0.758 5.758 10 C 0.692 3.308 11 O -0.534 6.534 12 N -0.667 5.667 13 C 0.353 3.647 14 C -0.250 4.250 15 C 0.139 3.861 16 C -0.449 4.449 17 H 0.082 0.918 18 C 0.074 3.926 19 N -0.791 5.791 20 Si 0.916 3.084 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.261 1.261 24 C -0.285 4.285 25 C 0.119 3.881 26 N -0.555 5.555 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.393 0.607 39 H 0.404 0.596 40 H 0.140 0.860 41 H 0.281 0.719 42 H 0.101 0.899 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.453 -11.633 -2.256 22.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.744 4.744 3 S 2.599 3.401 4 O -0.933 6.933 5 O -0.933 6.933 6 C -0.738 4.738 7 C -0.164 4.164 8 C 0.025 3.975 9 N -0.416 5.416 10 C 0.391 3.609 11 O -0.405 6.405 12 N -0.315 5.315 13 C 0.127 3.873 14 C -0.276 4.276 15 C 0.131 3.869 16 C -0.480 4.480 17 H 0.100 0.900 18 C -0.144 4.144 19 N -0.417 5.417 20 Si 0.740 3.260 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.185 1.185 24 C -0.309 4.309 25 C -0.035 4.035 26 N -0.274 5.274 27 H 0.099 0.901 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.151 0.849 31 H 0.151 0.849 32 H 0.156 0.844 33 H 0.156 0.844 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.226 0.774 39 H 0.239 0.761 40 H 0.157 0.843 41 H 0.092 0.908 42 H 0.119 0.881 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -19.986 -12.549 -2.210 23.703 hybrid contribution 0.729 1.509 0.134 1.681 sum -19.257 -11.040 -2.075 22.294 Atomic orbital electron populations 1.21521 0.90333 1.04924 1.03830 1.30223 1.07605 1.24948 1.11650 1.08173 0.78200 0.78247 0.75487 1.93605 1.81039 1.73090 1.45534 1.93602 1.81067 1.73106 1.45546 1.30259 1.24466 1.06808 1.12269 1.21511 0.96356 0.93774 1.04747 1.20982 0.88715 0.85014 1.02822 1.45170 1.05339 1.08769 1.82367 1.16064 0.81273 0.84725 0.78826 1.91010 1.63074 1.32950 1.53449 1.42538 1.05879 1.07259 1.75786 1.17996 0.81674 0.90874 0.96783 1.21788 0.96184 0.95350 1.14250 1.17586 0.91070 0.92317 0.85937 1.19623 0.97815 0.92855 1.37733 0.90029 1.25987 0.94571 1.01571 0.92279 1.69734 1.12357 1.32211 1.27357 0.86189 0.80517 0.80559 0.78751 1.19218 1.20200 1.18509 1.21646 0.99299 0.93680 1.16304 1.21457 0.89248 0.96445 0.96344 1.67194 1.07145 1.28809 1.24220 0.90053 0.90758 0.90771 0.84914 0.84904 0.84435 0.84425 0.89353 0.89386 0.91335 0.91310 0.77375 0.76109 0.84293 0.90789 0.88100 0.86099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 9.92 37.16 0.37 -0.26 16 2 C -0.62 -2.01 6.52 37.16 0.24 -1.77 16 3 S 2.42 15.25 4.72 -107.50 -0.51 14.75 16 4 O -0.94 -9.43 18.10 -57.83 -1.05 -10.47 16 5 O -0.94 -9.34 18.10 -57.83 -1.05 -10.39 16 6 C -0.61 -2.96 5.81 37.16 0.22 -2.75 16 7 C -0.13 -0.96 5.34 -26.73 -0.14 -1.11 16 8 C 0.15 1.67 5.67 -4.05 -0.02 1.64 16 9 N -0.76 -10.22 5.56 -65.23 -0.36 -10.58 16 10 C 0.69 13.42 8.52 -86.92 -0.74 12.68 16 11 O -0.53 -12.69 14.60 5.29 0.08 -12.61 16 12 N -0.67 -13.31 5.39 -15.86 -0.09 -13.39 16 13 C 0.35 8.70 7.42 -154.68 -1.15 7.55 16 14 C -0.25 -6.38 8.67 -38.46 -0.33 -6.72 16 15 C 0.14 3.68 5.65 -106.55 -0.60 3.08 16 16 C -0.45 -11.53 9.15 -37.65 -0.34 -11.88 16 17 H 0.08 2.00 7.88 -52.49 -0.41 1.59 16 18 C 0.07 1.78 5.31 -17.34 -0.09 1.69 16 19 N -0.79 -19.32 10.50 55.55 0.58 -18.74 16 20 Si 0.92 17.88 29.58 -169.99 -5.03 12.85 16 21 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 22 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 23 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 24 C -0.29 -7.07 9.85 -39.07 -0.38 -7.45 16 25 C 0.12 2.90 11.10 -18.05 -0.20 2.70 16 26 N -0.55 -14.45 7.86 -12.76 -0.10 -14.55 16 27 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.13 0.17 8.14 -51.92 -0.42 -0.25 16 31 H 0.13 0.18 8.14 -51.92 -0.42 -0.25 16 32 H 0.14 0.38 8.14 -51.92 -0.42 -0.04 16 33 H 0.14 0.40 8.14 -51.92 -0.42 -0.03 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.39 4.05 8.49 -40.82 -0.35 3.71 16 39 H 0.40 6.55 8.72 -40.82 -0.36 6.20 16 40 H 0.14 3.51 5.81 -52.49 -0.30 3.21 16 41 H 0.28 6.20 8.29 -40.82 -0.34 5.87 16 42 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 43 H 0.12 2.58 8.06 -52.49 -0.42 2.16 16 LS Contribution 379.52 15.07 5.72 5.72 Total: -1.00 -38.48 379.52 -11.03 -49.51 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -6.05 Total: 10.49 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -3.18 Total: -2.59 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: 0.03 Total: -57.26 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -2.02 Total: -33.47 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Atomic # 16 Polarization: 15.25 SS G_CDS: -0.51 Total: 14.75 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -38.48 -11.03 -49.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626732263.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.539 kcal (2) G-P(sol) polarization free energy of solvation -38.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds