Wall clock time and date at job start Sat Apr 11 2020 06:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81400 * 109.47249 * 2 1 4 4 O 1.42099 * 108.57664 * 65.51002 * 3 2 1 5 5 O 1.42100 * 108.57736 * 294.48387 * 3 2 1 6 6 C 1.81399 * 101.91852 * 180.02562 * 3 2 1 7 7 C 1.53003 * 109.46919 * 180.02562 * 6 3 2 8 8 C 1.52995 * 109.47362 * 179.97438 * 7 6 3 9 9 N 1.46493 * 109.47496 * 179.97438 * 8 7 6 10 10 C 1.34777 * 120.00657 * 179.97438 * 9 8 7 11 11 O 1.21583 * 119.99443 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00506 * 180.27476 * 10 9 8 13 13 C 1.39460 * 120.00060 * 175.17765 * 12 10 9 14 14 C 1.38639 * 119.64954 * 186.28818 * 13 12 10 15 15 C 1.40821 * 118.67929 * 179.97438 * 14 13 12 16 16 C 1.41541 * 121.00269 * 179.97438 * 15 14 13 17 17 H 1.07996 * 119.99731 * 201.15287 * 16 15 14 18 18 C 1.40030 * 119.99880 * 21.14210 * 16 15 14 19 19 N 1.30743 * 119.99956 * 12.11135 * 18 16 15 20 20 Si 1.86801 * 120.00104 * 192.10739 * 18 16 15 21 21 H 1.48490 * 109.47249 * 90.00250 * 20 18 16 22 22 H 1.48505 * 109.46978 * 210.00456 * 20 18 16 23 23 H 1.48498 * 109.46840 * 329.99990 * 20 18 16 24 24 C 1.41167 * 118.00046 * 359.97438 * 15 14 13 25 25 C 1.36591 * 119.12813 * 0.02562 * 24 15 14 26 26 N 1.32062 * 121.26005 * 359.73808 * 25 24 15 27 27 H 1.09003 * 109.47427 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47120 * 300.00109 * 1 2 3 29 29 H 1.09007 * 109.47240 * 60.00285 * 1 2 3 30 30 H 1.09007 * 109.47222 * 239.99654 * 2 1 3 31 31 H 1.09001 * 109.46905 * 120.00351 * 2 1 3 32 32 H 1.08999 * 109.47859 * 60.00117 * 6 3 2 33 33 H 1.09002 * 109.47250 * 299.99598 * 6 3 2 34 34 H 1.08999 * 109.47420 * 59.99499 * 7 6 3 35 35 H 1.09002 * 109.46677 * 299.99760 * 7 6 3 36 36 H 1.08999 * 109.47239 * 59.99416 * 8 7 6 37 37 H 1.09002 * 109.47051 * 299.99558 * 8 7 6 38 38 H 0.97000 * 119.99966 * 359.97438 * 9 8 7 39 39 H 0.97000 * 120.00020 * 355.18674 * 12 10 9 40 40 H 1.07998 * 120.66226 * 0.02562 * 14 13 12 41 41 H 0.96996 * 120.00359 * 179.97438 * 19 18 16 42 42 H 1.08000 * 120.43442 * 179.97438 * 24 15 14 43 43 H 1.07999 * 119.36721 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.7592 2.3232 1.2258 5 8 1.7593 2.3231 -1.2258 6 6 3.9329 1.4718 -0.0008 7 6 4.6281 2.8348 -0.0002 8 6 6.1448 2.6337 -0.0003 9 7 6.8104 3.9387 -0.0003 10 6 8.1564 4.0088 0.0001 11 8 8.8181 2.9889 0.0002 12 7 8.7687 5.2095 0.0057 13 6 10.1576 5.2834 0.1077 14 6 10.7704 6.5194 0.2445 15 6 12.1740 6.5703 0.3463 16 6 12.8505 7.8056 0.4869 17 1 13.8958 7.8815 0.2264 18 6 12.1643 8.9293 0.9637 19 7 10.9795 8.7931 1.4994 20 14 12.9418 10.6229 0.8344 21 1 12.5591 11.2459 -0.4580 22 1 12.4649 11.4733 1.9545 23 1 14.4197 10.4956 0.9041 24 6 12.8861 5.3521 0.3040 25 6 12.1947 4.1822 0.1667 26 7 10.8771 4.1712 0.0786 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 4.2253 0.9148 -0.8909 33 1 4.2260 0.9146 0.8890 34 1 4.3357 3.3914 0.8901 35 1 4.3351 3.3923 -0.8898 36 1 6.4375 2.0769 -0.8904 37 1 6.4374 2.0763 0.8896 38 1 6.2825 4.7525 -0.0008 39 1 8.2434 6.0221 -0.0612 40 1 10.1830 7.4252 0.2732 41 1 10.5043 9.5714 1.8299 42 1 13.9636 5.3454 0.3783 43 1 12.7356 3.2480 0.1343 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626732263.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:58 Heat of formation + Delta-G solvation = -95.410680 kcal Electronic energy + Delta-G solvation = -26047.812623 eV Core-core repulsion = 22026.373818 eV Total energy + Delta-G solvation = -4021.438805 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.39789 -39.83559 -37.98747 -37.16510 -36.93147 -36.05553 -35.48722 -33.97597 -33.77249 -32.37784 -30.41645 -27.96555 -27.65216 -25.01176 -23.82833 -23.46750 -22.69766 -21.69814 -19.78758 -19.60374 -19.37184 -18.11767 -17.58914 -17.41550 -17.11444 -16.81941 -16.75950 -16.02812 -15.97579 -15.92653 -15.79760 -15.15782 -15.02237 -14.67467 -14.42825 -14.27959 -14.15235 -13.67641 -13.64220 -13.36071 -13.13499 -13.10975 -13.01953 -12.98941 -12.86566 -12.68434 -12.35322 -12.11585 -12.03518 -11.87648 -11.74903 -11.52266 -11.33646 -11.18645 -11.13888 -10.10908 -9.91405 -9.61908 -8.81747 -8.57815 -6.57364 -0.96305 0.85291 1.02405 1.42120 1.55133 1.59088 1.62929 1.87512 2.20507 2.27260 2.68358 2.84954 3.12255 3.18525 3.70621 3.77941 3.78590 3.80249 3.85801 3.98886 4.18228 4.36356 4.42943 4.51782 4.69599 4.76178 4.76592 4.86943 4.89763 4.92760 4.94354 5.01448 5.12062 5.13907 5.28362 5.47586 5.52741 5.67177 5.84919 6.01108 6.27895 6.58518 6.80892 6.84759 6.98968 7.61510 7.91569 8.27125 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.023165 B = 0.001776 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.427991 B =15762.133824 C =16728.981274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.594 4.594 3 S 2.414 3.586 4 O -0.983 6.983 5 O -0.982 6.982 6 C -0.601 4.601 7 C -0.128 4.128 8 C 0.146 3.854 9 N -0.736 5.736 10 C 0.689 3.311 11 O -0.579 6.579 12 N -0.661 5.661 13 C 0.349 3.651 14 C -0.268 4.268 15 C 0.110 3.890 16 C -0.478 4.478 17 H 0.084 0.916 18 C 0.036 3.964 19 N -0.812 5.812 20 Si 0.991 3.009 21 H -0.261 1.261 22 H -0.267 1.267 23 H -0.259 1.259 24 C -0.299 4.299 25 C 0.113 3.887 26 N -0.580 5.580 27 H 0.101 0.899 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.162 0.838 31 H 0.161 0.839 32 H 0.164 0.836 33 H 0.163 0.837 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.410 0.590 39 H 0.420 0.580 40 H 0.137 0.863 41 H 0.292 0.708 42 H 0.115 0.885 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.079 -12.089 -2.281 23.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.726 4.726 3 S 2.602 3.398 4 O -0.980 6.980 5 O -0.979 6.979 6 C -0.731 4.731 7 C -0.166 4.166 8 C 0.021 3.979 9 N -0.395 5.395 10 C 0.388 3.612 11 O -0.454 6.454 12 N -0.310 5.310 13 C 0.122 3.878 14 C -0.294 4.294 15 C 0.101 3.899 16 C -0.508 4.508 17 H 0.102 0.898 18 C -0.181 4.181 19 N -0.438 5.438 20 Si 0.812 3.188 21 H -0.185 1.185 22 H -0.192 1.192 23 H -0.182 1.182 24 C -0.323 4.323 25 C -0.040 4.040 26 N -0.300 5.300 27 H 0.119 0.881 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.180 0.820 31 H 0.179 0.821 32 H 0.182 0.818 33 H 0.181 0.819 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.246 0.754 39 H 0.257 0.743 40 H 0.154 0.846 41 H 0.103 0.897 42 H 0.133 0.867 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -20.699 -12.957 -2.236 24.522 hybrid contribution 0.851 1.555 0.163 1.780 sum -19.848 -11.402 -2.073 22.983 Atomic orbital electron populations 1.21697 0.91177 1.06025 1.03381 1.30048 1.06782 1.21275 1.14545 1.07925 0.78647 0.79613 0.73591 1.93544 1.82122 1.75498 1.46865 1.93542 1.82123 1.75481 1.46802 1.30190 1.22219 1.05741 1.14981 1.21518 0.93998 0.95863 1.05248 1.21197 0.90531 0.83557 1.02595 1.45039 1.03310 1.10846 1.80318 1.16257 0.82789 0.83706 0.78449 1.90971 1.64652 1.34231 1.55571 1.42439 1.04541 1.08542 1.75512 1.18214 0.83432 0.90398 0.95723 1.21781 0.96195 0.95623 1.15792 1.18033 0.91936 0.93392 0.86509 1.19919 0.98316 0.93712 1.38866 0.89784 1.26863 0.94967 1.05083 0.91184 1.69764 1.13295 1.33925 1.26792 0.85056 0.79477 0.75228 0.79079 1.18516 1.19159 1.18249 1.21832 1.00098 0.93493 1.16859 1.21909 0.89203 0.97498 0.95425 1.67323 1.07885 1.29415 1.25379 0.88059 0.91405 0.91361 0.82048 0.82113 0.81760 0.81898 0.89136 0.88929 0.91425 0.91712 0.75355 0.74288 0.84564 0.89707 0.86657 0.83508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 9.92 71.98 0.71 -0.40 16 2 C -0.59 -2.08 6.52 71.98 0.47 -1.61 16 3 S 2.41 27.69 4.72 -56.49 -0.27 27.42 16 4 O -0.98 -19.74 18.10 -127.37 -2.31 -22.05 16 5 O -0.98 -19.45 18.10 -127.37 -2.30 -21.75 16 6 C -0.60 -4.30 5.81 71.98 0.42 -3.88 16 7 C -0.13 -1.76 5.34 30.59 0.16 -1.59 16 8 C 0.15 3.03 5.67 86.38 0.49 3.52 16 9 N -0.74 -19.15 5.56 -478.56 -2.66 -21.81 16 10 C 0.69 26.61 8.52 179.05 1.53 28.13 16 11 O -0.58 -27.73 14.60 -3.98 -0.06 -27.78 16 12 N -0.66 -26.51 5.39 -322.36 -1.74 -28.25 16 13 C 0.35 17.52 7.42 132.76 0.98 18.51 16 14 C -0.27 -13.98 8.67 23.00 0.20 -13.78 16 15 C 0.11 5.91 5.65 -21.11 -0.12 5.79 16 16 C -0.48 -24.76 9.15 23.52 0.22 -24.54 16 17 H 0.08 4.16 7.88 -2.91 -0.02 4.14 16 18 C 0.04 1.69 5.31 85.29 0.45 2.15 16 19 N -0.81 -39.55 10.50 21.84 0.23 -39.32 16 20 Si 0.99 35.82 29.58 68.60 2.03 37.85 16 21 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16 22 H -0.27 -9.17 7.11 99.48 0.71 -8.46 16 23 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 24 C -0.30 -15.03 9.85 22.60 0.22 -14.80 16 25 C 0.11 5.56 11.10 84.27 0.94 6.49 16 26 N -0.58 -30.64 7.86 -194.27 -1.53 -32.17 16 27 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.16 -0.28 8.14 -2.39 -0.02 -0.30 16 31 H 0.16 -0.25 8.14 -2.39 -0.02 -0.27 16 32 H 0.16 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.16 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.41 7.92 8.49 -92.71 -0.79 7.14 16 39 H 0.42 13.56 8.72 -92.71 -0.81 12.75 16 40 H 0.14 7.04 5.81 -2.91 -0.02 7.02 16 41 H 0.29 12.67 8.29 -92.71 -0.77 11.90 16 42 H 0.12 5.27 8.06 -2.91 -0.02 5.24 16 43 H 0.15 6.23 8.06 -2.91 -0.02 6.21 16 Total: -1.00 -85.71 379.52 -2.47 -88.19 By element: Atomic # 1 Polarization: 36.24 SS G_CDS: -0.54 Total: 35.70 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 6.67 Total: 3.98 kcal Atomic # 7 Polarization: -115.85 SS G_CDS: -5.70 Total: -121.55 kcal Atomic # 8 Polarization: -66.92 SS G_CDS: -4.67 Total: -71.59 kcal Atomic # 14 Polarization: 35.82 SS G_CDS: 2.03 Total: 37.85 kcal Atomic # 16 Polarization: 27.69 SS G_CDS: -0.27 Total: 27.42 kcal Total: -85.71 -2.47 -88.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626732263.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.222 kcal (2) G-P(sol) polarization free energy of solvation -85.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds