Wall clock time and date at job start Sat Apr 11 2020 06:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21284 * 120.00436 * 2 1 4 4 N 1.34777 * 119.99661 * 180.02562 * 2 1 3 5 5 C 1.40116 * 120.00082 * 175.45768 * 4 2 1 6 6 C 1.39400 * 120.41292 * 34.94501 * 5 4 2 7 7 C 1.38272 * 118.43845 * 179.97438 * 6 5 4 8 8 C 1.39065 * 119.17729 * 0.02562 * 7 6 5 9 9 N 1.39462 * 119.62126 * 179.97438 * 8 7 6 10 10 C 1.34778 * 119.99863 * 185.06876 * 9 8 7 11 11 O 1.21601 * 120.00061 * 354.89796 * 10 9 8 12 12 C 1.47492 * 120.00151 * 174.89330 * 10 9 8 13 13 C 1.39684 * 120.20163 * 0.02562 * 12 10 9 14 14 C 1.37816 * 119.92102 * 180.02562 * 13 12 10 15 15 C 1.38582 * 120.32372 * 359.97438 * 14 13 12 16 16 C 1.38020 * 120.40588 * 0.02562 * 15 14 13 17 17 C 1.38829 * 120.07621 * 0.02562 * 16 15 14 18 18 O 1.35519 * 120.16400 * 179.97438 * 17 16 15 19 19 C 1.34813 * 116.99977 * 5.70198 * 18 17 16 20 20 H 1.08001 * 119.99827 * 5.41938 * 19 18 17 21 21 C 1.38697 * 119.99911 * 185.41695 * 19 18 17 22 22 N 1.31519 * 120.00003 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 120.00286 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47052 * 89.99490 * 23 21 19 25 25 H 1.48493 * 109.47412 * 209.99963 * 23 21 19 26 26 H 1.48507 * 109.46972 * 329.99770 * 23 21 19 27 27 N 1.32323 * 120.75122 * 0.27882 * 8 7 6 28 28 C 1.31912 * 121.70444 * 359.43257 * 27 8 7 29 29 H 1.09004 * 109.46938 * 239.99873 * 1 2 3 30 30 H 1.09000 * 109.46836 * 359.97438 * 1 2 3 31 31 H 1.08993 * 109.47603 * 119.99731 * 1 2 3 32 32 H 0.96997 * 120.00318 * 355.45938 * 4 2 1 33 33 H 1.08002 * 120.77655 * 359.96010 * 6 5 4 34 34 H 1.08008 * 120.41477 * 180.02562 * 7 6 5 35 35 H 0.96999 * 120.00755 * 5.07267 * 9 8 7 36 36 H 1.08000 * 120.03676 * 359.97438 * 13 12 10 37 37 H 1.07994 * 119.83971 * 180.02562 * 14 13 12 38 38 H 1.07999 * 119.79578 * 180.02562 * 15 14 13 39 39 H 1.08007 * 119.96220 * 179.74341 * 16 15 14 40 40 H 0.96998 * 119.99912 * 179.97438 * 22 21 19 41 41 H 1.08004 * 119.62532 * 180.29294 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5787 -1.1692 -0.0966 6 6 4.3287 -0.1586 0.5028 7 6 5.7055 -0.2009 0.3829 8 6 6.2924 -1.2426 -0.3273 9 7 7.6803 -1.2940 -0.4546 10 6 8.2516 -2.2406 -1.2253 11 8 7.5655 -3.1056 -1.7349 12 6 9.7092 -2.2273 -1.4508 13 6 10.5015 -1.2360 -0.8672 14 6 11.8627 -1.2287 -1.0822 15 6 12.4511 -2.2013 -1.8749 16 6 11.6810 -3.1871 -2.4582 17 6 10.3080 -3.2097 -2.2536 18 8 9.5501 -4.1765 -2.8259 19 6 10.2020 -5.1552 -3.4851 20 1 11.2812 -5.1935 -3.4655 21 6 9.4868 -6.1130 -4.1885 22 7 10.1227 -7.0675 -4.8321 23 14 7.6203 -6.0465 -4.2230 24 1 7.1755 -5.2249 -5.3773 25 1 7.0782 -7.4224 -4.3567 26 1 7.1232 -5.4390 -2.9624 27 7 5.5488 -2.1821 -0.8887 28 6 4.2334 -2.1763 -0.7899 29 1 -0.3633 -0.5139 0.8900 30 1 -0.3633 1.0277 0.0005 31 1 -0.3634 -0.5137 -0.8899 32 1 1.6981 -2.0060 0.0656 33 1 3.8455 0.6389 1.0480 34 1 6.3176 0.5656 0.8350 35 1 8.2345 -0.6487 0.0116 36 1 10.0477 -0.4756 -0.2489 37 1 12.4741 -0.4619 -0.6300 38 1 13.5187 -2.1878 -2.0374 39 1 12.1464 -3.9392 -3.0781 40 1 9.6225 -7.7375 -5.3237 41 1 3.6594 -2.9627 -1.2575 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645671273.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:01 Heat of formation + Delta-G solvation = -6.625898 kcal Electronic energy + Delta-G solvation = -28280.582533 eV Core-core repulsion = 24127.549774 eV Total energy + Delta-G solvation = -4153.032760 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.04128 -40.06978 -39.27990 -38.01049 -36.56090 -35.43232 -34.03989 -32.47534 -32.26356 -31.11889 -30.37092 -29.23928 -28.22416 -25.38617 -24.45935 -23.58303 -22.72528 -21.42094 -20.91141 -20.07416 -18.50141 -18.06331 -17.89558 -17.35894 -17.08433 -16.49410 -15.81412 -15.40996 -15.01005 -14.85030 -14.58309 -14.35618 -14.32919 -14.04451 -13.98941 -13.73286 -13.42989 -13.23552 -13.03827 -12.91126 -12.69780 -12.61253 -12.36813 -12.18026 -11.50207 -11.29770 -11.17546 -10.85664 -10.73591 -10.42255 -10.03496 -10.01554 -9.84054 -9.61029 -9.41040 -8.90312 -8.69848 -8.44147 -7.80559 -7.50656 -6.48895 -4.13923 0.97168 1.31929 1.57397 2.15431 2.26114 2.73699 3.15197 3.32317 3.38170 3.46281 3.70814 3.96346 4.31661 4.37107 4.49298 4.52101 4.70084 4.77855 4.84760 4.88610 4.94101 5.00091 5.06560 5.27618 5.32506 5.40171 5.54623 5.60244 5.63797 5.84241 5.97040 6.00801 6.08912 6.32775 6.43250 6.51438 6.76765 6.87555 6.97807 7.03737 7.11381 7.43128 7.46407 7.67787 7.77127 7.92344 8.21622 8.79457 8.86614 9.48399 10.55821 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012407 B = 0.003126 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.159351 B = 8955.627581 C =11094.978893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.509 3.491 3 O -0.532 6.532 4 N -0.665 5.665 5 C 0.040 3.960 6 C -0.046 4.046 7 C -0.199 4.199 8 C 0.365 3.635 9 N -0.665 5.665 10 C 0.546 3.454 11 O -0.447 6.447 12 C -0.227 4.227 13 C -0.042 4.042 14 C -0.220 4.220 15 C -0.050 4.050 16 C -0.224 4.224 17 C 0.201 3.799 18 O -0.163 6.163 19 C -0.395 4.395 20 H 0.108 0.892 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.893 3.107 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.228 1.228 27 N -0.455 5.455 28 C 0.121 3.879 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.412 0.588 33 H 0.149 0.851 34 H 0.138 0.862 35 H 0.411 0.589 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.139 0.861 40 H 0.282 0.718 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.344 13.433 12.231 22.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.297 3.703 3 O -0.408 6.408 4 N -0.312 5.312 5 C -0.057 4.057 6 C -0.074 4.074 7 C -0.224 4.224 8 C 0.132 3.868 9 N -0.313 5.313 10 C 0.336 3.664 11 O -0.315 6.315 12 C -0.232 4.232 13 C -0.061 4.061 14 C -0.239 4.239 15 C -0.068 4.068 16 C -0.243 4.243 17 C 0.143 3.857 18 O -0.063 6.063 19 C -0.470 4.470 20 H 0.126 0.874 21 C -0.133 4.133 22 N -0.503 5.503 23 Si 0.717 3.283 24 H -0.200 1.200 25 H -0.212 1.212 26 H -0.151 1.151 27 N -0.169 5.169 28 C -0.041 4.041 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.248 0.752 33 H 0.166 0.834 34 H 0.156 0.844 35 H 0.249 0.751 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.157 0.843 40 H 0.092 0.908 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -13.202 12.567 11.139 21.361 hybrid contribution -0.829 0.460 0.486 1.065 sum -14.030 13.027 11.625 22.398 Atomic orbital electron populations 1.21919 0.90710 1.05953 1.04614 1.21022 0.90884 0.83158 0.75232 1.90723 1.70533 1.31361 1.48157 1.43404 1.04765 1.09879 1.73121 1.18710 0.83467 1.00269 1.03253 1.21377 0.92424 0.97759 0.95835 1.21393 0.95278 1.00175 1.05508 1.18556 0.85204 0.90396 0.92595 1.43760 1.03376 1.34546 1.49641 1.18438 0.87999 0.81145 0.78846 1.90976 1.63073 1.32813 1.44676 1.18747 0.91722 1.02232 1.10540 1.20756 0.93843 0.95229 0.96232 1.20534 0.94436 1.02400 1.06501 1.20982 0.98915 0.92944 0.94004 1.21293 0.93317 1.02943 1.06796 1.18999 0.89736 0.86877 0.90073 1.83792 1.34525 1.29886 1.58120 1.20921 0.93847 1.02815 1.29442 0.87436 1.24504 1.01014 0.94003 0.93803 1.69638 1.37394 1.13670 1.29633 0.86291 0.82855 0.77111 0.82021 1.20045 1.21187 1.15077 1.67797 1.05266 1.24218 1.19641 1.22556 0.89818 0.97296 0.94437 0.89086 0.88619 0.88974 0.75204 0.83380 0.84444 0.75124 0.86883 0.86890 0.86743 0.84323 0.90787 0.82514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.74 10.32 36.01 0.37 -0.37 16 2 C 0.51 4.56 7.80 -10.99 -0.09 4.48 16 3 O -0.53 -7.05 14.57 5.55 0.08 -6.97 16 4 N -0.67 -5.54 5.35 -9.73 -0.05 -5.59 16 5 C 0.04 0.48 6.32 -83.47 -0.53 -0.05 16 6 C -0.05 -0.57 8.80 -39.14 -0.34 -0.92 16 7 C -0.20 -2.48 9.93 -39.26 -0.39 -2.87 16 8 C 0.36 5.83 7.42 -154.66 -1.15 4.68 16 9 N -0.67 -10.51 5.34 -12.36 -0.07 -10.57 16 10 C 0.55 11.32 7.72 -12.49 -0.10 11.23 16 11 O -0.45 -11.33 13.23 -16.58 -0.22 -11.55 16 12 C -0.23 -4.58 5.89 -104.81 -0.62 -5.20 16 13 C -0.04 -0.65 9.53 -39.20 -0.37 -1.03 16 14 C -0.22 -3.32 10.02 -39.61 -0.40 -3.72 16 15 C -0.05 -0.84 10.03 -39.53 -0.40 -1.23 16 16 C -0.22 -4.68 9.12 -39.44 -0.36 -5.04 16 17 C 0.20 4.72 6.66 -38.59 -0.26 4.46 16 18 O -0.16 -4.48 6.67 -21.05 -0.14 -4.62 16 19 C -0.40 -11.27 9.90 30.90 0.31 -10.96 16 20 H 0.11 3.05 5.53 -52.49 -0.29 2.76 16 21 C 0.07 2.09 5.49 -17.52 -0.10 1.99 16 22 N -0.87 -25.21 13.96 55.48 0.77 -24.43 16 23 Si 0.89 23.07 28.62 -169.99 -4.86 18.21 16 24 H -0.27 -7.09 7.11 56.52 0.40 -6.68 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.23 -6.27 6.91 56.52 0.39 -5.88 16 27 N -0.46 -8.29 7.87 -12.20 -0.10 -8.39 16 28 C 0.12 1.70 11.11 -17.35 -0.19 1.50 16 29 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.09 0.44 8.12 -51.93 -0.42 0.02 16 31 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.41 1.96 8.83 -40.82 -0.36 1.60 16 33 H 0.15 1.77 6.32 -52.49 -0.33 1.44 16 34 H 0.14 1.26 8.06 -52.48 -0.42 0.84 16 35 H 0.41 4.72 6.75 -40.82 -0.28 4.44 16 36 H 0.11 1.27 6.42 -52.49 -0.34 0.94 16 37 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 39 H 0.14 3.01 5.72 -52.48 -0.30 2.71 16 40 H 0.28 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.16 1.82 8.06 -52.48 -0.42 1.40 16 LS Contribution 357.30 15.07 5.38 5.38 Total: -1.00 -37.89 357.30 -7.80 -45.69 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -4.00 Total: 5.89 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -4.60 Total: -3.05 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: 0.56 Total: -48.99 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.28 Total: -23.14 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -4.86 Total: 18.21 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -37.89 -7.80 -45.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645671273.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.067 kcal (2) G-P(sol) polarization free energy of solvation -37.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds