Wall clock time and date at job start Sat Apr 11 2020 06:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35786 * 117.00354 * 2 1 4 4 C 1.38025 * 123.46633 * 359.97282 * 3 2 1 5 5 C 1.33611 * 115.08168 * 179.97438 * 4 3 2 6 6 S 1.70578 * 111.14915 * 359.97438 * 5 4 3 7 7 C 1.37265 * 123.47361 * 179.97438 * 3 2 1 8 8 C 1.41727 * 125.47107 * 0.03657 * 7 3 2 9 9 O 1.21767 * 120.00571 * 0.02562 * 8 7 3 10 10 N 1.34777 * 119.99508 * 180.02562 * 8 7 3 11 11 C 1.46500 * 120.00099 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47628 * 179.97438 * 11 10 8 13 13 H 1.09005 * 109.46537 * 65.00354 * 12 11 10 14 14 C 1.52998 * 109.47735 * 185.00223 * 12 11 10 15 15 N 1.46901 * 109.47354 * 305.00875 * 12 11 10 16 16 C 1.46902 * 111.00185 * 154.99684 * 15 12 11 17 17 C 1.50701 * 109.46748 * 179.97438 * 16 15 12 18 18 O 1.21293 * 120.00098 * 0.02562 * 17 16 15 19 19 N 1.34774 * 119.99530 * 179.97438 * 17 16 15 20 20 C 1.37106 * 119.99708 * 180.02562 * 19 17 16 21 21 H 1.07999 * 119.99950 * 0.02562 * 20 19 17 22 22 C 1.38952 * 119.99828 * 180.02562 * 20 19 17 23 23 N 1.31405 * 119.99818 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99979 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47058 * 89.99900 * 24 22 20 26 26 H 1.48501 * 109.47150 * 209.99820 * 24 22 20 27 27 H 1.48503 * 109.47406 * 330.00201 * 24 22 20 28 28 H 1.08994 * 109.47303 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46981 * 300.00419 * 1 2 3 30 30 H 1.09007 * 109.46708 * 60.00229 * 1 2 3 31 31 H 1.07997 * 122.46298 * 359.95625 * 4 3 2 32 32 H 1.08003 * 124.43034 * 180.02562 * 5 4 3 33 33 H 0.97001 * 120.00500 * 0.02562 * 10 8 7 34 34 H 1.09003 * 109.47315 * 300.00993 * 11 10 8 35 35 H 1.08998 * 109.46552 * 60.00124 * 11 10 8 36 36 H 1.08994 * 109.47828 * 180.02562 * 14 12 11 37 37 H 1.09004 * 109.47150 * 300.00733 * 14 12 11 38 38 H 1.08997 * 109.46645 * 59.99907 * 14 12 11 39 39 H 1.00902 * 110.99836 * 31.03697 * 15 12 11 40 40 H 1.08997 * 109.46780 * 299.99974 * 16 15 12 41 41 H 1.08996 * 109.47155 * 59.99844 * 16 15 12 42 42 H 0.96998 * 120.00679 * 0.02562 * 19 17 16 43 43 H 0.97007 * 119.99741 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2098 0.0000 4 6 1.3653 2.4108 -0.0005 5 6 2.1390 3.5000 0.0001 6 16 3.7924 3.0805 0.0021 7 6 3.4095 1.3645 0.0005 8 6 4.3567 0.3103 0.0004 9 8 3.9794 -0.8474 -0.0007 10 7 5.6753 0.5893 0.0014 11 6 6.6546 -0.5004 0.0019 12 6 8.0684 0.0844 0.0024 13 1 8.2377 0.6246 0.9340 14 6 9.0891 -1.0484 -0.1229 15 7 8.2177 1.0058 -1.1319 16 6 9.2632 2.0030 -0.8661 17 6 9.3876 2.9279 -2.0494 18 8 8.6751 2.7720 -3.0185 19 7 10.2898 3.9289 -2.0302 20 6 10.4026 4.7707 -3.1066 21 1 9.7682 4.6319 -3.9695 22 6 11.3332 5.8024 -3.0871 23 7 11.4417 6.6089 -4.1188 24 14 12.4300 6.0428 -1.5942 25 1 13.6770 5.2545 -1.7640 26 1 12.7691 7.4820 -1.4557 27 1 11.7159 5.5831 -0.3760 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 0.2867 2.4660 -0.0017 32 1 1.7664 4.5138 0.0002 33 1 5.9760 1.5115 0.0027 34 1 6.5145 -1.1145 0.8915 35 1 6.5159 -1.1137 -0.8884 36 1 10.0963 -0.6319 -0.1220 37 1 8.9782 -1.7321 0.7188 38 1 8.9197 -1.5886 -1.0543 39 1 7.3402 1.4520 -1.3532 40 1 8.9983 2.5797 0.0201 41 1 10.2140 1.4969 -0.6994 42 1 10.8594 4.0538 -1.2551 43 1 12.0911 7.3293 -4.1051 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662395625.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:14 Heat of formation + Delta-G solvation = -59.630138 kcal Electronic energy + Delta-G solvation = -26798.842925 eV Core-core repulsion = 22778.955681 eV Total energy + Delta-G solvation = -4019.887245 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.53783 -39.40803 -38.52468 -36.99603 -36.22044 -34.13972 -33.73328 -31.71723 -31.24103 -30.34247 -27.69511 -26.77772 -26.08292 -24.71910 -23.73444 -21.57258 -20.69698 -19.91625 -19.46780 -19.00878 -18.31919 -17.30552 -16.48996 -16.26273 -16.13328 -15.81643 -15.45300 -15.42409 -14.99773 -14.86911 -14.52924 -14.17529 -13.93071 -13.66762 -13.25535 -13.17475 -12.95443 -12.78522 -12.66108 -12.44748 -12.19306 -12.02356 -11.93605 -11.76695 -11.55427 -11.42952 -11.27347 -11.19960 -10.90525 -10.61070 -10.02029 -9.98839 -9.58683 -9.28080 -9.01663 -8.60477 -8.36763 -8.23537 -8.18073 -6.32333 -3.83791 0.22162 1.15669 1.48633 2.04749 3.00526 3.05678 3.09252 3.13816 3.16754 3.22699 3.71959 4.01922 4.09187 4.31663 4.61209 4.70829 4.76592 4.77125 4.82437 5.01728 5.10803 5.15732 5.20499 5.21824 5.25858 5.45027 5.54024 5.56147 5.68272 5.71416 5.80993 5.84158 5.90904 5.95390 6.21310 6.36257 6.93073 7.04909 7.35422 7.49289 7.56828 8.13214 8.16699 8.58370 8.93792 9.41062 9.81166 10.80753 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013456 B = 0.002634 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.410464 B =10627.263864 C =12114.609490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.272 6.272 3 C 0.190 3.810 4 C -0.217 4.217 5 C -0.194 4.194 6 S 0.239 5.761 7 C -0.331 4.331 8 C 0.599 3.401 9 O -0.523 6.523 10 N -0.734 5.734 11 C 0.121 3.879 12 C 0.071 3.929 13 H 0.049 0.951 14 C -0.137 4.137 15 N -0.664 5.664 16 C 0.046 3.954 17 C 0.449 3.551 18 O -0.562 6.562 19 N -0.590 5.590 20 C -0.305 4.305 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 H 0.103 0.897 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.151 0.849 32 H 0.176 0.824 33 H 0.393 0.607 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.349 0.651 40 H 0.045 0.955 41 H 0.090 0.910 42 H 0.370 0.630 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.529 -8.743 15.382 24.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.183 6.183 3 C 0.129 3.871 4 C -0.251 4.251 5 C -0.332 4.332 6 S 0.505 5.495 7 C -0.451 4.451 8 C 0.388 3.612 9 O -0.402 6.402 10 N -0.388 5.388 11 C -0.002 4.002 12 C -0.040 4.040 13 H 0.067 0.933 14 C -0.196 4.196 15 N -0.299 5.299 16 C -0.087 4.087 17 C 0.234 3.766 18 O -0.444 6.444 19 N -0.230 5.230 20 C -0.433 4.433 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.521 5.521 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.195 1.195 28 H 0.122 0.878 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.168 0.832 32 H 0.193 0.807 33 H 0.228 0.772 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.170 0.830 40 H 0.063 0.937 41 H 0.108 0.892 42 H 0.203 0.797 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.334 -9.299 14.260 23.593 hybrid contribution -0.970 0.994 1.692 2.189 sum -17.304 -8.305 15.952 24.957 Atomic orbital electron populations 1.23193 0.78342 1.04441 1.01334 1.86331 1.20884 1.24119 1.86954 1.18271 0.90186 0.85463 0.93173 1.20041 1.02132 0.90877 1.12010 1.25098 0.99204 1.03941 1.04972 1.83343 1.03345 0.95101 1.67755 1.22742 0.95392 0.98565 1.28420 1.15457 0.81335 0.87753 0.76699 1.90865 1.79487 1.20102 1.49711 1.45927 1.05914 1.09974 1.77021 1.21583 0.85928 0.89445 1.03265 1.21831 0.94141 0.95216 0.92768 0.93317 1.21732 0.98481 0.97131 1.02242 1.60112 1.11353 1.20745 1.37726 1.21806 0.97166 0.93371 0.96377 1.19693 0.84194 0.83364 0.89304 1.90580 1.45680 1.72868 1.35268 1.42208 1.34564 1.28384 1.17841 1.19433 1.20146 1.07190 0.96556 0.86263 1.25040 0.97637 0.96163 0.97333 1.69622 1.35582 1.17569 1.29329 0.86675 0.81458 0.78802 0.82451 1.19599 1.20217 1.19526 0.87838 0.92586 0.92471 0.83180 0.80669 0.77228 0.90664 0.90121 0.92050 0.92416 0.91378 0.83002 0.93722 0.89205 0.79707 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.94 101.05 1.00 1.16 16 2 O -0.27 -3.37 9.36 -36.59 -0.34 -3.72 16 3 C 0.19 2.27 6.70 -40.01 -0.27 2.00 16 4 C -0.22 -1.89 9.17 -41.28 -0.38 -2.26 16 5 C -0.19 -1.54 10.90 29.11 0.32 -1.23 16 6 S 0.24 2.33 22.00 -107.50 -2.37 -0.04 16 7 C -0.33 -4.26 6.28 -38.60 -0.24 -4.50 16 8 C 0.60 8.87 7.59 -14.93 -0.11 8.75 16 9 O -0.52 -9.39 15.84 -12.39 -0.20 -9.59 16 10 N -0.73 -9.31 4.97 -63.19 -0.31 -9.63 16 11 C 0.12 1.46 5.31 -4.04 -0.02 1.44 16 12 C 0.07 0.82 2.81 -67.72 -0.19 0.63 16 13 H 0.05 0.51 7.80 -51.93 -0.40 0.10 16 14 C -0.14 -1.44 9.41 37.16 0.35 -1.09 16 15 N -0.66 -10.07 5.93 -107.99 -0.64 -10.71 16 16 C 0.05 0.72 5.97 -4.97 -0.03 0.69 16 17 C 0.45 9.95 7.82 -10.99 -0.09 9.86 16 18 O -0.56 -14.88 15.78 5.55 0.09 -14.79 16 19 N -0.59 -13.75 5.09 -10.96 -0.06 -13.81 16 20 C -0.30 -8.49 10.16 -14.93 -0.15 -8.65 16 21 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 23 N -0.88 -25.49 13.96 55.50 0.77 -24.71 16 24 Si 0.88 19.04 27.74 -169.99 -4.71 14.33 16 25 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 26 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 27 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 28 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.29 7.88 -51.93 -0.41 -0.12 16 30 H 0.06 0.32 7.88 -51.93 -0.41 -0.09 16 31 H 0.15 0.89 6.99 -52.49 -0.37 0.52 16 32 H 0.18 0.88 8.06 -52.48 -0.42 0.46 16 33 H 0.39 4.54 6.34 -40.82 -0.26 4.28 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.06 0.65 7.45 -51.93 -0.39 0.26 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.35 5.56 6.41 -39.29 -0.25 5.31 16 40 H 0.04 0.60 8.05 -51.93 -0.42 0.18 16 41 H 0.09 1.28 7.44 -51.93 -0.39 0.90 16 42 H 0.37 7.53 5.76 -40.82 -0.24 7.30 16 43 H 0.27 7.29 8.31 -40.82 -0.34 6.96 16 LS Contribution 375.45 15.07 5.66 5.66 Total: -1.00 -36.32 375.45 -7.63 -43.95 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -5.62 Total: 15.24 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: 0.09 Total: 7.82 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: -0.24 Total: -58.86 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.45 Total: -28.10 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -4.71 Total: 14.33 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -2.37 Total: -0.04 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.32 -7.63 -43.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662395625.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.680 kcal (2) G-P(sol) polarization free energy of solvation -36.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds