Wall clock time and date at job start Sat Apr 11 2020 06:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35786 * 117.00354 * 2 1 4 4 C 1.38025 * 123.46633 * 359.97282 * 3 2 1 5 5 C 1.33611 * 115.08168 * 179.97438 * 4 3 2 6 6 S 1.70578 * 111.14915 * 359.97438 * 5 4 3 7 7 C 1.37265 * 123.47361 * 179.97438 * 3 2 1 8 8 C 1.41727 * 125.47107 * 0.03657 * 7 3 2 9 9 O 1.21767 * 120.00571 * 0.02562 * 8 7 3 10 10 N 1.34777 * 119.99508 * 180.02562 * 8 7 3 11 11 C 1.46500 * 120.00099 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47628 * 179.97438 * 11 10 8 13 13 H 1.09005 * 109.46537 * 65.00354 * 12 11 10 14 14 C 1.52998 * 109.47735 * 185.00223 * 12 11 10 15 15 N 1.46901 * 109.47354 * 305.00875 * 12 11 10 16 16 C 1.46902 * 111.00185 * 154.99684 * 15 12 11 17 17 C 1.50701 * 109.46748 * 179.97438 * 16 15 12 18 18 O 1.21293 * 120.00098 * 0.02562 * 17 16 15 19 19 N 1.34774 * 119.99530 * 179.97438 * 17 16 15 20 20 C 1.37106 * 119.99708 * 180.02562 * 19 17 16 21 21 H 1.07999 * 119.99950 * 0.02562 * 20 19 17 22 22 C 1.38952 * 119.99828 * 180.02562 * 20 19 17 23 23 N 1.31405 * 119.99818 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99979 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47058 * 89.99900 * 24 22 20 26 26 H 1.48501 * 109.47150 * 209.99820 * 24 22 20 27 27 H 1.48503 * 109.47406 * 330.00201 * 24 22 20 28 28 H 1.08994 * 109.47303 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46981 * 300.00419 * 1 2 3 30 30 H 1.09007 * 109.46708 * 60.00229 * 1 2 3 31 31 H 1.07997 * 122.46298 * 359.95625 * 4 3 2 32 32 H 1.08003 * 124.43034 * 180.02562 * 5 4 3 33 33 H 0.97001 * 120.00500 * 0.02562 * 10 8 7 34 34 H 1.09003 * 109.47315 * 300.00993 * 11 10 8 35 35 H 1.08998 * 109.46552 * 60.00124 * 11 10 8 36 36 H 1.08994 * 109.47828 * 180.02562 * 14 12 11 37 37 H 1.09004 * 109.47150 * 300.00733 * 14 12 11 38 38 H 1.08997 * 109.46645 * 59.99907 * 14 12 11 39 39 H 1.00902 * 110.99836 * 31.03697 * 15 12 11 40 40 H 1.08997 * 109.46780 * 299.99974 * 16 15 12 41 41 H 1.08996 * 109.47155 * 59.99844 * 16 15 12 42 42 H 0.96998 * 120.00679 * 0.02562 * 19 17 16 43 43 H 0.97007 * 119.99741 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2098 0.0000 4 6 1.3653 2.4108 -0.0005 5 6 2.1390 3.5000 0.0001 6 16 3.7924 3.0805 0.0021 7 6 3.4095 1.3645 0.0005 8 6 4.3567 0.3103 0.0004 9 8 3.9794 -0.8474 -0.0007 10 7 5.6753 0.5893 0.0014 11 6 6.6546 -0.5004 0.0019 12 6 8.0684 0.0844 0.0024 13 1 8.2377 0.6246 0.9340 14 6 9.0891 -1.0484 -0.1229 15 7 8.2177 1.0058 -1.1319 16 6 9.2632 2.0030 -0.8661 17 6 9.3876 2.9279 -2.0494 18 8 8.6751 2.7720 -3.0185 19 7 10.2898 3.9289 -2.0302 20 6 10.4026 4.7707 -3.1066 21 1 9.7682 4.6319 -3.9695 22 6 11.3332 5.8024 -3.0871 23 7 11.4417 6.6089 -4.1188 24 14 12.4300 6.0428 -1.5942 25 1 13.6770 5.2545 -1.7640 26 1 12.7691 7.4820 -1.4557 27 1 11.7159 5.5831 -0.3760 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 0.2867 2.4660 -0.0017 32 1 1.7664 4.5138 0.0002 33 1 5.9760 1.5115 0.0027 34 1 6.5145 -1.1145 0.8915 35 1 6.5159 -1.1137 -0.8884 36 1 10.0963 -0.6319 -0.1220 37 1 8.9782 -1.7321 0.7188 38 1 8.9197 -1.5886 -1.0543 39 1 7.3402 1.4520 -1.3532 40 1 8.9983 2.5797 0.0201 41 1 10.2140 1.4969 -0.6994 42 1 10.8594 4.0538 -1.2551 43 1 12.0911 7.3293 -4.1051 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662395625.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:13 Heat of formation + Delta-G solvation = -89.275262 kcal Electronic energy + Delta-G solvation = -26800.128434 eV Core-core repulsion = 22778.955681 eV Total energy + Delta-G solvation = -4021.172754 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.43020 -40.49641 -40.10280 -38.18503 -36.97892 -35.99936 -34.98968 -33.72865 -32.35324 -31.17626 -28.42132 -28.20651 -27.03635 -25.69669 -25.24657 -22.48852 -21.69066 -21.29349 -20.68031 -20.34635 -19.82324 -18.20287 -17.74699 -17.29279 -17.09457 -16.91976 -16.79069 -16.49088 -16.38489 -15.89500 -15.69225 -15.45655 -14.94842 -14.84705 -14.62647 -14.43217 -14.20545 -13.93692 -13.66213 -13.50984 -13.44705 -13.31301 -12.95269 -12.80621 -12.59474 -12.51520 -12.38691 -12.06382 -11.98134 -11.95413 -11.85992 -11.49193 -11.14210 -10.41728 -10.30474 -10.22586 -9.83651 -9.38224 -9.13712 -8.38908 -5.99769 -0.56662 0.38823 0.77694 1.28441 1.32155 1.38175 1.46746 1.97618 2.11917 2.21426 2.25343 2.46955 2.70317 3.17539 3.35498 3.64502 3.69219 4.02256 4.11750 4.16943 4.20594 4.29034 4.35772 4.36780 4.43770 4.56783 4.57865 4.62049 4.69281 4.82040 4.83260 4.94749 5.05898 5.06252 5.27474 5.47112 5.55217 5.91635 6.04527 6.20400 6.29767 6.37249 6.61939 6.90668 7.11842 7.42179 7.98974 8.78710 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013456 B = 0.002634 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.410464 B =10627.263864 C =12114.609490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.306 6.306 3 C 0.186 3.814 4 C -0.222 4.222 5 C -0.173 4.173 6 S 0.241 5.759 7 C -0.377 4.377 8 C 0.594 3.406 9 O -0.569 6.569 10 N -0.728 5.728 11 C 0.123 3.877 12 C 0.079 3.921 13 H 0.075 0.925 14 C -0.136 4.136 15 N -0.685 5.685 16 C 0.059 3.941 17 C 0.448 3.552 18 O -0.614 6.614 19 N -0.590 5.590 20 C -0.327 4.327 21 H 0.054 0.946 22 C -0.016 4.016 23 N -0.935 5.935 24 Si 0.965 3.035 25 H -0.259 1.259 26 H -0.276 1.276 27 H -0.228 1.228 28 H 0.113 0.887 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.181 0.819 32 H 0.211 0.789 33 H 0.399 0.601 34 H 0.086 0.914 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.051 0.949 39 H 0.340 0.660 40 H 0.084 0.916 41 H 0.117 0.883 42 H 0.390 0.610 43 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.307 -8.133 19.033 26.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.218 6.218 3 C 0.124 3.876 4 C -0.254 4.254 5 C -0.311 4.311 6 S 0.506 5.494 7 C -0.497 4.497 8 C 0.384 3.616 9 O -0.452 6.452 10 N -0.381 5.381 11 C 0.000 4.000 12 C -0.030 4.030 13 H 0.093 0.907 14 C -0.194 4.194 15 N -0.321 5.321 16 C -0.073 4.073 17 C 0.236 3.764 18 O -0.498 6.498 19 N -0.232 5.232 20 C -0.456 4.456 21 H 0.073 0.927 22 C -0.214 4.214 23 N -0.576 5.576 24 Si 0.784 3.216 25 H -0.184 1.184 26 H -0.202 1.202 27 H -0.151 1.151 28 H 0.131 0.869 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.199 0.801 32 H 0.228 0.772 33 H 0.235 0.765 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.070 0.930 39 H 0.161 0.839 40 H 0.101 0.899 41 H 0.135 0.865 42 H 0.226 0.774 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.106 -8.702 17.940 25.631 hybrid contribution -1.212 0.777 0.436 1.504 sum -17.318 -7.924 18.376 26.464 Atomic orbital electron populations 1.23505 0.75857 1.05776 1.02996 1.86282 1.23670 1.25116 1.86759 1.18714 0.90318 0.86415 0.92189 1.20273 1.03648 0.89596 1.11926 1.25559 0.97858 1.05414 1.02318 1.83253 1.05032 0.93032 1.68081 1.22808 0.95777 0.99759 1.31316 1.15814 0.82100 0.87741 0.75912 1.90818 1.80235 1.21866 1.52231 1.45884 1.05530 1.10442 1.76233 1.21589 0.86301 0.89338 1.02776 1.21883 0.93781 0.94910 0.92458 0.90717 1.21748 0.98178 0.97005 1.02515 1.60124 1.10899 1.20999 1.40030 1.21756 0.98858 0.92737 0.93971 1.20962 0.82153 0.82944 0.90333 1.90562 1.47278 1.73995 1.37946 1.42016 1.35599 1.28235 1.17306 1.18994 1.20455 1.09444 0.96714 0.92741 1.26122 0.98955 0.94810 1.01547 1.69809 1.36827 1.18476 1.32475 0.85372 0.78908 0.78855 0.78423 1.18385 1.20151 1.15063 0.86866 0.90583 0.91008 0.80143 0.77163 0.76515 0.89569 0.92236 0.91567 0.90017 0.92997 0.83921 0.89851 0.86470 0.77417 0.91199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.94 113.37 1.13 1.29 16 2 O -0.31 -7.70 9.36 -74.40 -0.70 -8.39 16 3 C 0.19 4.38 6.70 21.99 0.15 4.53 16 4 C -0.22 -3.39 9.17 21.17 0.19 -3.19 16 5 C -0.17 -2.31 10.90 66.77 0.73 -1.59 16 6 S 0.24 4.48 22.00 -56.49 -1.24 3.23 16 7 C -0.38 -9.85 6.28 22.90 0.14 -9.71 16 8 C 0.59 18.26 7.59 85.10 0.65 18.91 16 9 O -0.57 -21.54 15.84 12.19 0.19 -21.35 16 10 N -0.73 -18.59 4.97 -472.03 -2.35 -20.94 16 11 C 0.12 2.92 5.31 86.38 0.46 3.38 16 12 C 0.08 1.65 2.81 44.91 0.13 1.77 16 13 H 0.08 1.24 7.80 -2.38 -0.02 1.22 16 14 C -0.14 -2.52 9.41 71.98 0.68 -1.85 16 15 N -0.69 -19.81 5.93 -495.58 -2.94 -22.75 16 16 C 0.06 1.69 5.97 85.56 0.51 2.20 16 17 C 0.45 19.65 7.82 87.66 0.69 20.34 16 18 O -0.61 -33.63 15.78 -3.07 -0.05 -33.68 16 19 N -0.59 -26.98 5.09 -306.98 -1.56 -28.55 16 20 C -0.33 -18.85 10.16 84.04 0.85 -17.99 16 21 H 0.05 3.77 7.39 -2.91 -0.02 3.75 16 22 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 23 N -0.94 -55.87 13.96 21.66 0.30 -55.57 16 24 Si 0.96 37.80 27.74 68.60 1.90 39.70 16 25 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 26 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 27 H -0.23 -7.31 6.52 99.48 0.65 -6.67 16 28 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.08 0.64 7.88 -2.39 -0.02 0.62 16 30 H 0.07 0.68 7.88 -2.38 -0.02 0.67 16 31 H 0.18 1.53 6.99 -2.91 -0.02 1.51 16 32 H 0.21 1.25 8.06 -2.91 -0.02 1.22 16 33 H 0.40 9.09 6.34 -92.71 -0.59 8.50 16 34 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.07 1.18 7.45 -2.39 -0.02 1.16 16 37 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.34 10.77 6.41 -89.69 -0.58 10.19 16 40 H 0.08 1.83 8.05 -2.39 -0.02 1.81 16 41 H 0.12 2.82 7.44 -2.39 -0.02 2.80 16 42 H 0.39 14.56 5.76 -92.71 -0.53 14.03 16 43 H 0.28 15.20 8.31 -92.70 -0.77 14.43 16 Total: -1.00 -87.27 375.45 -0.35 -87.62 By element: Atomic # 1 Polarization: 43.65 SS G_CDS: -0.68 Total: 42.97 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: 6.77 Total: 17.69 kcal Atomic # 7 Polarization: -121.26 SS G_CDS: -6.54 Total: -127.80 kcal Atomic # 8 Polarization: -62.87 SS G_CDS: -0.55 Total: -63.42 kcal Atomic # 14 Polarization: 37.80 SS G_CDS: 1.90 Total: 39.70 kcal Atomic # 16 Polarization: 4.48 SS G_CDS: -1.24 Total: 3.23 kcal Total: -87.27 -0.35 -87.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662395625.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.653 kcal (2) G-P(sol) polarization free energy of solvation -87.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds