Wall clock time and date at job start Sat Apr 11 2020 06:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.46844 * 2 1 4 4 C 1.34781 * 119.99755 * 179.97438 * 3 2 1 5 5 O 1.21594 * 119.99815 * 0.02562 * 4 3 2 6 6 N 1.34771 * 120.00042 * 180.02562 * 4 3 2 7 7 C 1.46496 * 119.99907 * 180.02562 * 6 4 3 8 8 C 1.53001 * 109.47291 * 179.97438 * 7 6 4 9 9 N 1.46497 * 109.47506 * 179.97438 * 8 7 6 10 10 S 1.65603 * 120.00269 * 164.99575 * 9 8 7 11 11 O 1.42101 * 106.40420 * 311.46503 * 10 9 8 12 12 O 1.42093 * 106.40486 * 178.54249 * 10 9 8 13 13 C 1.76202 * 107.21304 * 65.00274 * 10 9 8 14 14 C 1.38656 * 119.87802 * 270.24806 * 13 10 9 15 15 C 1.38611 * 120.50290 * 180.30014 * 14 13 10 16 16 C 1.37646 * 120.24720 * 359.45638 * 15 14 13 17 17 C 1.40700 * 119.74049 * 0.26612 * 16 15 14 18 18 C 1.41394 * 120.23887 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99918 * 204.39256 * 18 17 16 20 20 C 1.39939 * 120.00458 * 24.38628 * 18 17 16 21 21 N 1.30826 * 119.99815 * 17.86380 * 20 18 17 22 22 Si 1.86807 * 120.00442 * 197.86044 * 20 18 17 23 23 H 1.48504 * 109.46582 * 94.69503 * 22 20 18 24 24 H 1.48499 * 109.47234 * 214.69507 * 22 20 18 25 25 H 1.48502 * 109.46792 * 334.69880 * 22 20 18 26 26 C 1.37595 * 119.87364 * 90.00510 * 13 10 9 27 27 H 1.08999 * 109.46884 * 300.00064 * 1 2 3 28 28 H 1.09005 * 109.47327 * 59.99584 * 1 2 3 29 29 H 1.09001 * 109.47175 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47007 * 240.00466 * 2 1 3 31 31 H 1.08993 * 109.47192 * 120.00097 * 2 1 3 32 32 H 0.96994 * 120.00628 * 0.02562 * 3 2 1 33 33 H 0.97002 * 120.00021 * 359.97438 * 6 4 3 34 34 H 1.09003 * 109.47870 * 59.99928 * 7 6 4 35 35 H 1.09004 * 109.47301 * 299.99591 * 7 6 4 36 36 H 1.08996 * 109.47119 * 59.99718 * 8 7 6 37 37 H 1.09000 * 109.47134 * 300.00311 * 8 7 6 38 38 H 0.97003 * 120.00209 * 345.00253 * 9 8 7 39 39 H 1.08005 * 119.75084 * 0.05438 * 14 13 10 40 40 H 1.07994 * 119.87907 * 179.72408 * 15 14 13 41 41 H 1.07991 * 120.12819 * 180.25140 * 16 15 14 42 42 H 0.97002 * 120.00124 * 179.97438 * 21 20 18 43 43 H 1.07998 * 120.13108 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1335 0.7033 0.0005 6 7 3.7926 2.8982 0.0010 7 6 5.2329 3.1658 0.0010 8 6 5.4708 4.6772 0.0010 9 7 6.9111 4.9449 0.0017 10 16 7.4723 6.4582 -0.3695 11 8 6.8089 6.8505 -1.5633 12 8 8.8870 6.4023 -0.2489 13 6 6.9078 7.5482 0.8947 14 6 5.6846 8.1871 0.7603 15 6 5.2308 9.0519 1.7439 16 6 5.9869 9.2771 2.8719 17 6 7.2272 8.6297 3.0215 18 6 8.0127 8.8538 4.1757 19 1 9.0814 8.7023 4.1392 20 6 7.4054 9.2719 5.3651 21 7 6.1158 9.1244 5.5281 22 14 8.4363 10.0405 6.7202 23 1 8.4011 11.5194 6.5903 24 1 7.8882 9.6466 8.0429 25 1 9.8388 9.5666 6.6043 26 6 7.6804 7.7582 2.0137 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.3880 2.1185 0.0004 33 1 3.1623 3.6355 0.0007 34 1 5.6841 2.7274 -0.8891 35 1 5.6841 2.7267 0.8909 36 1 5.0197 5.1160 0.8910 37 1 5.0197 5.1160 -0.8889 38 1 7.5362 4.2358 0.2194 39 1 5.0826 8.0126 -0.1192 40 1 4.2786 9.5477 1.6269 41 1 5.6297 9.9482 3.6389 42 1 5.6949 9.4139 6.3527 43 1 8.6308 7.2562 2.1184 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663461663.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:19 Heat of formation + Delta-G solvation = -95.180134 kcal Electronic energy + Delta-G solvation = -26646.807466 eV Core-core repulsion = 22625.378658 eV Total energy + Delta-G solvation = -4021.428808 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.14623 -37.69211 -36.86807 -36.49363 -35.38570 -35.34689 -33.95988 -33.87894 -30.84527 -30.12656 -29.84116 -28.02076 -25.53826 -23.56581 -22.57153 -21.92949 -21.21136 -21.02975 -19.18059 -18.70372 -18.05829 -17.13855 -16.42186 -16.18404 -15.98602 -15.85531 -15.32898 -15.07934 -14.80684 -14.67932 -14.43319 -14.22362 -14.08581 -13.51466 -13.38328 -12.79509 -12.62721 -12.37476 -12.18399 -12.17064 -11.94872 -11.78329 -11.66360 -11.57070 -11.45768 -11.42527 -11.41583 -11.04364 -10.93245 -10.63626 -10.41453 -9.85770 -9.73371 -9.51365 -9.40081 -9.26135 -9.03140 -8.09573 -7.75827 -6.97441 -4.58063 0.93961 2.13595 2.45865 2.58473 2.97641 3.02252 3.03241 3.03887 3.50567 3.79776 4.07640 4.18633 4.38507 4.57186 4.64446 4.74867 4.91927 4.98306 5.05260 5.33301 5.34970 5.44122 5.54738 5.57050 5.66166 5.80956 5.92106 6.00586 6.11593 6.21405 6.27132 6.60925 6.66504 6.71349 6.78838 6.98431 7.10877 7.17376 7.33019 7.67346 7.76753 7.77971 7.89627 8.36012 8.40106 8.62408 8.67097 9.97933 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011128 B = 0.002594 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.674639 B =10790.094302 C =12208.192988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.133 3.867 3 N -0.748 5.748 4 C 0.705 3.295 5 O -0.591 6.591 6 N -0.743 5.743 7 C 0.133 3.867 8 C 0.109 3.891 9 N -1.118 6.118 10 S 2.693 3.307 11 O -0.974 6.974 12 O -0.969 6.969 13 C -0.632 4.632 14 C -0.151 4.151 15 C -0.120 4.120 16 C -0.119 4.119 17 C 0.091 3.909 18 C -0.459 4.459 19 H 0.084 0.916 20 C 0.075 3.925 21 N -0.794 5.794 22 Si 0.912 3.088 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.260 1.260 26 C -0.123 4.123 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.397 0.603 33 H 0.400 0.600 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.416 0.584 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.125 0.875 42 H 0.283 0.717 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.784 -10.760 -6.382 16.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.009 3.991 3 N -0.405 5.405 4 C 0.404 3.596 5 O -0.469 6.469 6 N -0.399 5.399 7 C 0.007 3.993 8 C -0.018 4.018 9 N -0.876 5.876 10 S 2.789 3.211 11 O -0.964 6.964 12 O -0.960 6.960 13 C -0.724 4.724 14 C -0.173 4.173 15 C -0.140 4.140 16 C -0.139 4.139 17 C 0.087 3.913 18 C -0.488 4.488 19 H 0.102 0.898 20 C -0.143 4.143 21 N -0.419 5.419 22 Si 0.736 3.264 23 H -0.192 1.192 24 H -0.202 1.202 25 H -0.183 1.183 26 C -0.144 4.144 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.231 0.769 33 H 0.234 0.766 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.250 0.750 39 H 0.124 0.876 40 H 0.116 0.884 41 H 0.143 0.857 42 H 0.094 0.906 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -9.839 -11.287 -7.008 16.532 hybrid contribution -0.445 0.994 1.575 1.915 sum -10.284 -10.292 -5.434 15.531 Atomic orbital electron populations 1.22016 0.94454 1.03243 1.02581 1.21144 0.93798 0.81800 1.02375 1.45165 1.05358 1.09188 1.80814 1.15883 0.82608 0.83263 0.77837 1.90940 1.54929 1.43283 1.57735 1.44917 1.08263 1.06316 1.80433 1.21323 0.79887 0.94720 1.03373 1.21305 0.81446 0.95718 1.03349 1.55457 1.13392 1.29749 1.89043 1.01574 0.72905 0.72305 0.74331 1.93513 1.76469 1.81839 1.44572 1.93548 1.28850 1.86098 1.87467 1.29722 1.06680 1.19581 1.16398 1.20065 0.95108 1.02639 0.99443 1.20804 0.98865 0.99312 0.94994 1.21644 0.96139 0.99700 0.96386 1.17701 0.92340 0.89257 0.91992 1.19652 0.95755 1.39556 0.93837 0.89827 1.25942 0.95208 0.93250 0.99944 1.69778 1.11233 1.34161 1.26685 0.86222 0.80998 0.80061 0.79092 1.19197 1.20164 1.18339 1.20794 0.99072 1.00380 0.94165 0.91907 0.91966 0.90709 0.91661 0.91623 0.76935 0.76646 0.90711 0.90627 0.90494 0.89743 0.74996 0.87623 0.88408 0.85748 0.90573 0.86973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.72 10.03 37.16 0.37 -0.35 16 2 C 0.13 0.98 6.39 -4.04 -0.03 0.95 16 3 N -0.75 -6.07 5.56 -65.23 -0.36 -6.43 16 4 C 0.70 8.25 8.57 -86.92 -0.74 7.51 16 5 O -0.59 -9.46 16.34 5.28 0.09 -9.38 16 6 N -0.74 -7.19 5.56 -65.22 -0.36 -7.55 16 7 C 0.13 1.43 5.82 -4.04 -0.02 1.41 16 8 C 0.11 1.25 6.34 -4.04 -0.03 1.23 16 9 N -1.12 -14.94 6.00 -10.62 -0.06 -15.00 16 10 S 2.69 47.66 5.73 -107.50 -0.62 47.05 16 11 O -0.97 -18.72 16.75 -57.17 -0.96 -19.68 16 12 O -0.97 -19.63 17.26 -57.17 -0.99 -20.61 16 13 C -0.63 -13.12 5.94 -39.66 -0.24 -13.35 16 14 C -0.15 -3.09 9.53 -39.29 -0.37 -3.46 16 15 C -0.12 -2.57 10.02 -39.66 -0.40 -2.97 16 16 C -0.12 -2.87 8.70 -38.87 -0.34 -3.20 16 17 C 0.09 2.28 5.58 -106.82 -0.60 1.69 16 18 C -0.46 -11.54 9.05 -37.75 -0.34 -11.88 16 19 H 0.08 2.04 7.91 -52.48 -0.41 1.62 16 20 C 0.07 1.77 5.14 -17.34 -0.09 1.68 16 21 N -0.79 -19.14 10.95 55.55 0.61 -18.53 16 22 Si 0.91 17.78 29.60 -169.99 -5.03 12.75 16 23 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 24 H -0.28 -5.28 7.11 56.52 0.40 -4.87 16 25 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 26 C -0.12 -2.85 9.26 -38.87 -0.36 -3.21 16 27 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.40 2.07 8.49 -40.82 -0.35 1.72 16 33 H 0.40 2.74 8.49 -40.82 -0.35 2.39 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.08 0.92 7.75 -51.93 -0.40 0.52 16 38 H 0.42 4.70 8.65 -34.47 -0.30 4.40 16 39 H 0.11 1.90 7.61 -52.48 -0.40 1.50 16 40 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 41 H 0.12 3.06 6.15 -52.49 -0.32 2.74 16 42 H 0.28 6.20 8.30 -40.82 -0.34 5.86 16 43 H 0.11 2.51 7.60 -52.49 -0.40 2.11 16 LS Contribution 379.57 15.07 5.72 5.72 Total: -1.00 -33.60 379.57 -11.01 -44.62 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -5.87 Total: 11.02 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: -3.18 Total: -23.97 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: -0.18 Total: -47.51 kcal Atomic # 8 Polarization: -47.81 SS G_CDS: -1.86 Total: -49.67 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.03 Total: 12.75 kcal Atomic # 16 Polarization: 47.66 SS G_CDS: -0.62 Total: 47.05 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.60 -11.01 -44.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663461663.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.562 kcal (2) G-P(sol) polarization free energy of solvation -33.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds