Wall clock time and date at job start Sat Apr 11 2020 06:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.53001 * 109.46508 * 119.99286 * 2 1 3 5 5 N 1.46507 * 109.46637 * 174.99939 * 4 2 1 6 6 C 1.46504 * 119.99803 * 90.00015 * 5 4 2 7 7 C 1.34778 * 120.00020 * 270.00181 * 5 4 2 8 8 O 1.21274 * 120.00051 * 359.97438 * 7 5 4 9 9 C 1.50697 * 119.99744 * 180.02562 * 7 5 4 10 10 C 1.50698 * 109.47095 * 179.97438 * 9 7 5 11 11 C 1.41385 * 126.80251 * 124.71024 * 10 9 7 12 12 C 1.35450 * 103.98527 * 179.88944 * 11 10 9 13 13 O 1.34041 * 106.44861 * 0.37201 * 12 11 10 14 14 N 1.20926 * 111.56267 * 359.74386 * 13 12 11 15 15 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 16 16 C 1.34777 * 119.99525 * 84.99977 * 15 2 1 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 2 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99674 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00584 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46793 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47282 * 119.99523 * 24 22 20 27 27 H 1.48500 * 109.47237 * 240.00020 * 24 22 20 28 28 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 29 29 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 30 30 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47553 * 294.99926 * 4 2 1 32 32 H 1.08998 * 109.47075 * 55.00372 * 4 2 1 33 33 H 1.09007 * 109.46786 * 90.00052 * 6 5 4 34 34 H 1.08998 * 109.46796 * 209.99798 * 6 5 4 35 35 H 1.08997 * 109.47151 * 330.00595 * 6 5 4 36 36 H 1.09002 * 109.47034 * 299.99966 * 9 7 5 37 37 H 1.09005 * 109.47150 * 60.00017 * 9 7 5 38 38 H 1.07999 * 128.00333 * 0.02562 * 11 10 9 39 39 H 1.08002 * 126.77696 * 180.09404 * 12 11 10 40 40 H 0.97000 * 120.00580 * 265.00723 * 15 2 1 41 41 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 42 42 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 43 43 H 0.97003 * 120.00297 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 7 3.5000 -0.8263 1.1907 6 6 4.3343 0.2342 1.7613 7 6 4.0757 -1.8987 0.6118 8 8 3.3851 -2.7768 0.1399 9 6 5.5776 -2.0071 0.5521 10 6 5.9615 -3.2898 -0.1394 11 6 6.7999 -3.4245 -1.2699 12 6 6.8311 -4.7595 -1.4970 13 8 6.0550 -5.3221 -0.5602 14 7 5.5824 -4.4928 0.1823 15 7 2.0185 -0.6908 -1.1960 16 6 2.1472 -0.0185 -2.3570 17 8 1.8591 1.1584 -2.4116 18 6 2.6554 -0.7275 -3.5859 19 16 2.7226 0.4369 -4.9699 20 6 3.3326 -0.6266 -6.2353 21 1 3.5410 -1.6633 -6.0155 22 6 3.5443 -0.1325 -7.5150 23 7 3.2888 1.1306 -7.7834 24 14 4.1903 -1.2601 -8.8567 25 1 4.3951 -2.6225 -8.3022 26 1 3.2076 -1.3203 -9.9685 27 1 5.4823 -0.7341 -9.3659 28 1 -0.3633 0.5140 0.8898 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.7516 -0.1581 2.1370 32 1 1.6053 -1.7197 1.2953 33 1 4.5424 0.0095 2.8075 34 1 5.2722 0.2953 1.2093 35 1 3.8090 1.1867 1.6919 36 1 5.9812 -1.1600 -0.0026 37 1 5.9826 -2.0050 1.5641 38 1 7.3013 -2.6439 -1.8227 39 1 7.3708 -5.2695 -2.2813 40 1 2.2491 -1.6319 -1.1524 41 1 3.6539 -1.1197 -3.3923 42 1 1.9842 -1.5494 -3.8349 43 1 3.4371 1.4761 -8.6776 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001679937387.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:35 Heat of formation + Delta-G solvation = -34.596630 kcal Electronic energy + Delta-G solvation = -27740.303712 eV Core-core repulsion = 23721.502002 eV Total energy + Delta-G solvation = -4018.801710 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.83578 -41.43641 -40.36148 -37.48258 -35.84154 -35.48445 -34.60816 -32.86987 -32.58133 -30.74740 -30.01454 -28.27817 -27.68239 -26.70008 -24.05831 -23.29032 -22.34144 -21.48178 -20.29369 -19.83129 -18.73486 -18.60123 -18.13531 -17.70633 -17.60179 -17.16089 -16.90302 -16.42610 -16.36549 -15.90068 -15.75737 -14.83295 -14.75701 -14.61345 -14.51422 -14.16417 -14.09503 -13.86017 -13.76953 -13.39334 -13.35220 -13.28573 -13.18319 -12.98296 -12.92576 -12.72758 -12.58277 -12.24419 -12.12889 -11.73571 -11.23884 -11.17579 -10.96982 -10.80796 -10.50307 -10.33244 -10.18424 -9.68422 -8.69664 -8.36881 -6.15329 0.67914 1.23506 1.26646 1.39830 1.44108 1.49725 1.56625 1.57883 1.98155 2.24567 2.32583 2.50444 2.97142 3.15397 3.29337 3.51368 3.73064 3.74076 3.94794 4.07255 4.16117 4.19341 4.21039 4.34548 4.38105 4.40291 4.43405 4.45707 4.62352 4.65603 4.70480 4.79171 4.86440 4.96235 5.00048 5.17019 5.20310 5.39396 5.40692 5.57788 6.17813 6.26636 6.45212 7.04332 7.06482 7.21324 7.39410 8.72674 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.008496 B = 0.003931 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3294.801061 B = 7120.287205 C = 9702.058225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.123 3.877 3 H 0.079 0.921 4 C 0.113 3.887 5 N -0.612 5.612 6 C 0.065 3.935 7 C 0.512 3.488 8 O -0.569 6.569 9 C -0.059 4.059 10 C 0.010 3.990 11 C -0.243 4.243 12 C -0.052 4.052 13 O 0.084 5.916 14 N -0.378 5.378 15 N -0.712 5.712 16 C 0.535 3.465 17 O -0.559 6.559 18 C -0.129 4.129 19 S -0.133 6.133 20 C -0.549 4.549 21 H 0.076 0.924 22 C 0.018 3.982 23 N -0.909 5.909 24 Si 0.998 3.002 25 H -0.260 1.260 26 H -0.273 1.273 27 H -0.269 1.269 28 H 0.098 0.902 29 H 0.035 0.965 30 H 0.061 0.939 31 H 0.133 0.867 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.191 0.809 39 H 0.255 0.745 40 H 0.408 0.592 41 H 0.096 0.904 42 H 0.092 0.908 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.498 -7.229 23.120 25.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.017 3.983 3 H 0.097 0.903 4 C -0.010 4.010 5 N -0.344 5.344 6 C -0.076 4.076 7 C 0.300 3.700 8 O -0.448 6.448 9 C -0.099 4.099 10 C -0.149 4.149 11 C -0.264 4.264 12 C -0.132 4.132 13 O 0.018 5.982 14 N -0.082 5.082 15 N -0.368 5.368 16 C 0.321 3.679 17 O -0.437 6.437 18 C -0.280 4.280 19 S 0.094 5.906 20 C -0.697 4.697 21 H 0.094 0.906 22 C -0.187 4.187 23 N -0.546 5.546 24 Si 0.819 3.181 25 H -0.183 1.183 26 H -0.199 1.199 27 H -0.194 1.194 28 H 0.117 0.883 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.151 0.849 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.156 0.844 37 H 0.156 0.844 38 H 0.208 0.792 39 H 0.271 0.729 40 H 0.247 0.753 41 H 0.114 0.886 42 H 0.111 0.889 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.874 -6.109 23.700 25.170 hybrid contribution 0.992 -1.537 -1.687 2.488 sum 6.867 -7.646 22.013 24.294 Atomic orbital electron populations 1.22087 0.93976 1.02606 1.02936 1.21599 0.95074 0.97385 0.84215 0.90253 1.21901 0.79498 1.02389 0.97212 1.47898 1.07156 1.21404 1.57910 1.22183 0.95663 0.89937 0.99828 1.20811 0.91057 0.81146 0.76960 1.90658 1.65473 1.40858 1.47807 1.20172 0.92088 0.93460 1.04202 1.23348 0.99287 0.94235 0.98049 1.23108 1.05150 0.98539 0.99647 1.26798 0.96418 0.93971 0.96033 1.84803 1.47522 1.33485 1.32407 1.73844 1.17720 1.00806 1.15874 1.46264 1.67072 1.14777 1.08725 1.19935 0.76903 0.86597 0.84499 1.90658 1.50871 1.17107 1.85107 1.23336 1.04433 1.03184 0.97074 1.85399 1.86478 1.16474 1.02267 1.23203 1.50937 0.98350 0.97226 0.90559 1.26089 0.94961 0.97203 1.00478 1.70176 1.46659 1.15361 1.22373 0.84927 0.78083 0.78132 0.76941 1.18349 1.19875 1.19373 0.88331 0.94558 0.91964 0.84905 0.90127 0.89666 0.89747 0.89859 0.84422 0.84409 0.79204 0.72900 0.75301 0.88556 0.88941 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 9.48 71.98 0.68 -2.71 16 2 C 0.12 2.85 2.88 45.00 0.13 2.97 16 3 H 0.08 2.02 7.58 -2.39 -0.02 2.01 16 4 C 0.11 1.82 5.14 86.38 0.44 2.27 16 5 N -0.61 -9.91 2.77 -846.74 -2.35 -12.26 16 6 C 0.07 0.55 10.24 127.77 1.31 1.85 16 7 C 0.51 11.23 6.96 87.66 0.61 11.84 16 8 O -0.57 -17.26 12.91 -3.01 -0.04 -17.29 16 9 C -0.06 -0.98 4.85 29.10 0.14 -0.84 16 10 C 0.01 0.23 6.10 43.58 0.27 0.50 16 11 C -0.24 -4.58 11.12 22.40 0.25 -4.33 16 12 C -0.05 -0.87 12.30 67.18 0.83 -0.05 16 13 O 0.08 2.01 11.20 71.62 0.80 2.81 16 14 N -0.38 -10.34 11.46 -49.54 -0.57 -10.91 16 15 N -0.71 -21.97 4.48 -442.52 -1.98 -23.95 16 16 C 0.54 21.65 7.81 87.66 0.68 22.34 16 17 O -0.56 -26.42 15.52 -3.04 -0.05 -26.47 16 18 C -0.13 -5.72 6.16 71.24 0.44 -5.28 16 19 S -0.13 -7.61 20.57 -56.49 -1.16 -8.77 16 20 C -0.55 -32.20 9.50 67.95 0.65 -31.55 16 21 H 0.08 4.25 7.80 -2.91 -0.02 4.23 16 22 C 0.02 1.02 5.49 84.86 0.47 1.48 16 23 N -0.91 -55.91 13.22 21.65 0.29 -55.63 16 24 Si 1.00 43.91 29.55 68.60 2.03 45.94 16 25 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 26 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 27 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 28 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.13 1.12 8.07 -2.39 -0.02 1.10 16 32 H 0.08 1.53 7.42 -2.39 -0.02 1.51 16 33 H 0.08 0.33 8.14 -2.38 -0.02 0.31 16 34 H 0.08 0.56 6.44 -2.39 -0.02 0.54 16 35 H 0.08 0.64 8.07 -2.39 -0.02 0.62 16 36 H 0.14 1.66 7.40 -2.39 -0.02 1.65 16 37 H 0.14 1.47 8.11 -2.38 -0.02 1.45 16 38 H 0.19 2.73 8.06 -2.91 -0.02 2.70 16 39 H 0.26 1.84 8.06 -2.91 -0.02 1.81 16 40 H 0.41 12.75 5.83 -92.71 -0.54 12.21 16 41 H 0.10 4.01 8.14 -2.39 -0.02 3.99 16 42 H 0.09 3.97 8.14 -2.40 -0.02 3.95 16 43 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -87.63 381.05 4.36 -83.27 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: 0.50 Total: 24.78 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: 6.89 Total: -1.52 kcal Atomic # 7 Polarization: -98.13 SS G_CDS: -4.61 Total: -102.74 kcal Atomic # 8 Polarization: -41.67 SS G_CDS: 0.72 Total: -40.95 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: -7.61 SS G_CDS: -1.16 Total: -8.77 kcal Total: -87.63 4.36 -83.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001679937387.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.671 kcal (2) G-P(sol) polarization free energy of solvation -87.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds