Wall clock time and date at job start Sat Apr 11 2020 06:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47443 * 2 1 4 4 C 1.53000 * 109.47495 * 239.99779 * 2 1 3 5 5 N 1.46493 * 109.47637 * 184.99964 * 4 2 1 6 6 C 1.46494 * 120.00444 * 269.72749 * 5 4 2 7 7 C 1.34784 * 119.99864 * 90.00039 * 5 4 2 8 8 O 1.21283 * 119.99649 * 359.72839 * 7 5 4 9 9 C 1.50694 * 119.99988 * 179.72721 * 7 5 4 10 10 C 1.50698 * 109.47166 * 179.97438 * 9 7 5 11 11 C 1.41382 * 126.80382 * 124.70753 * 10 9 7 12 12 C 1.35450 * 103.98724 * 179.89091 * 11 10 9 13 13 O 1.34037 * 106.44669 * 0.37273 * 12 11 10 14 14 N 1.20921 * 111.56701 * 359.74481 * 13 12 11 15 15 N 1.46508 * 109.47068 * 119.99937 * 2 1 3 16 16 C 1.34770 * 119.99848 * 275.00290 * 15 2 1 17 17 O 1.21278 * 120.00432 * 359.97438 * 16 15 2 18 18 C 1.50705 * 119.99598 * 180.02562 * 16 15 2 19 19 S 1.81001 * 109.46655 * 179.97438 * 18 16 15 20 20 C 1.76209 * 99.99853 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99690 * 0.02562 * 20 19 18 22 22 C 1.38794 * 119.99875 * 179.97438 * 20 19 18 23 23 N 1.31631 * 119.99779 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00300 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.46925 * 89.99990 * 24 22 20 26 26 H 1.48497 * 109.47024 * 209.99899 * 24 22 20 27 27 H 1.48498 * 109.46994 * 329.99935 * 24 22 20 28 28 H 1.09000 * 109.47443 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47159 * 300.00162 * 1 2 3 30 30 H 1.09001 * 109.47066 * 59.99820 * 1 2 3 31 31 H 1.09002 * 109.46747 * 64.99793 * 4 2 1 32 32 H 1.08996 * 109.47074 * 305.00519 * 4 2 1 33 33 H 1.08995 * 109.47693 * 270.27497 * 6 5 4 34 34 H 1.09003 * 109.47006 * 30.27410 * 6 5 4 35 35 H 1.09004 * 109.47665 * 150.27102 * 6 5 4 36 36 H 1.08998 * 109.47224 * 299.99701 * 9 7 5 37 37 H 1.09002 * 109.47054 * 60.00213 * 9 7 5 38 38 H 1.08005 * 128.00407 * 0.02562 * 11 10 9 39 39 H 1.08001 * 126.77440 * 180.09926 * 12 11 10 40 40 H 0.96999 * 119.99378 * 94.99936 * 15 2 1 41 41 H 1.09003 * 109.46951 * 299.99185 * 18 16 15 42 42 H 1.08994 * 109.47129 * 59.99902 * 18 16 15 43 43 H 0.97002 * 120.00307 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.3344 0.2310 -1.7665 7 6 4.0758 -1.8988 -0.6115 8 8 3.3850 -2.7742 -0.1346 9 6 5.5776 -2.0099 -0.5566 10 6 5.9615 -3.2914 0.1372 11 6 6.7976 -4.3120 -0.3709 12 6 6.8298 -5.2332 0.6216 13 8 6.0563 -4.7566 1.6070 14 7 5.5843 -3.6807 1.3207 15 7 2.0183 -0.6906 1.1962 16 6 2.1470 -0.0183 2.3572 17 8 1.8589 1.1585 2.4116 18 6 2.6498 -0.7286 3.5875 19 16 2.7112 0.4346 4.9729 20 6 3.3142 -0.6307 6.2403 21 1 3.5236 -1.6671 6.0203 22 6 3.5211 -0.1376 7.5211 23 7 3.9720 -0.9332 8.4678 24 14 3.1595 1.6552 7.9015 25 1 1.7488 1.7924 8.3447 26 1 4.0653 2.1247 8.9806 27 1 3.3770 2.4736 6.6817 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.7517 -0.1584 -2.1369 32 1 1.6054 -1.7198 -1.2951 33 1 4.5381 0.0038 -2.8129 34 1 3.8114 1.1849 -1.6971 35 1 5.2745 0.2915 -1.2182 36 1 5.9791 -2.0106 -1.5699 37 1 5.9847 -1.1625 -0.0050 38 1 7.2969 -4.3477 -1.3279 39 1 7.3684 -6.1693 0.6177 40 1 2.2490 -1.6318 1.1526 41 1 1.9776 -1.5509 3.8326 42 1 3.6491 -1.1204 3.3979 43 1 4.1162 -0.5888 9.3631 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001679937388.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:38 Heat of formation + Delta-G solvation = -5.015785 kcal Electronic energy + Delta-G solvation = -27797.218623 eV Core-core repulsion = 23779.699635 eV Total energy + Delta-G solvation = -4017.518988 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.01143 -40.51947 -39.02336 -36.51679 -34.93494 -34.57571 -32.34779 -31.88167 -31.52376 -29.88883 -28.53917 -27.69360 -25.98108 -25.51573 -23.26843 -22.33729 -21.41422 -20.18008 -19.51899 -17.98631 -17.83931 -17.68021 -17.10304 -16.66324 -16.41148 -16.22391 -15.53130 -14.93301 -14.90956 -14.74288 -14.08562 -13.96046 -13.79636 -13.40180 -13.34442 -13.28879 -13.08021 -12.91116 -12.71767 -12.70496 -12.53333 -12.19931 -11.99676 -11.81876 -11.34602 -11.21558 -11.18241 -10.94220 -10.49074 -10.42356 -10.00597 -9.78088 -9.72040 -9.38144 -9.07254 -8.92094 -8.75968 -8.39891 -6.81431 -6.19690 -3.90337 1.45402 2.02652 2.28767 2.66170 2.89898 3.12527 3.19123 3.38097 3.43712 3.56042 3.80407 3.89244 4.14338 4.39169 4.40695 4.59731 4.68353 4.81791 4.87515 4.91492 4.93488 5.02219 5.06890 5.12322 5.18807 5.19326 5.24751 5.34598 5.43731 5.47849 5.50411 5.65398 5.80411 5.93518 5.95323 6.01646 6.21912 6.23089 6.76496 6.96608 7.77358 7.92360 8.03950 8.23491 8.53864 8.66801 9.26434 10.89819 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009162 B = 0.003884 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3055.265343 B = 7207.648761 C = 9552.622792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.127 3.873 3 H 0.087 0.913 4 C 0.107 3.893 5 N -0.615 5.615 6 C 0.074 3.926 7 C 0.521 3.479 8 O -0.523 6.523 9 C -0.060 4.060 10 C 0.015 3.985 11 C -0.232 4.232 12 C -0.063 4.063 13 O 0.112 5.888 14 N -0.326 5.326 15 N -0.729 5.729 16 C 0.532 3.468 17 O -0.527 6.527 18 C -0.120 4.120 19 S -0.144 6.144 20 C -0.517 4.517 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.882 5.882 24 Si 0.856 3.144 25 H -0.268 1.268 26 H -0.275 1.275 27 H -0.236 1.236 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.169 0.831 39 H 0.215 0.785 40 H 0.408 0.592 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.667 -4.297 -28.207 28.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.021 3.979 3 H 0.105 0.895 4 C -0.016 4.016 5 N -0.348 5.348 6 C -0.069 4.069 7 C 0.309 3.691 8 O -0.399 6.399 9 C -0.100 4.100 10 C -0.145 4.145 11 C -0.253 4.253 12 C -0.144 4.144 13 O 0.041 5.959 14 N -0.025 5.025 15 N -0.387 5.387 16 C 0.318 3.682 17 O -0.403 6.403 18 C -0.271 4.271 19 S 0.082 5.918 20 C -0.665 4.665 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.519 5.519 24 Si 0.681 3.319 25 H -0.193 1.193 26 H -0.200 1.200 27 H -0.160 1.160 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.187 0.813 39 H 0.231 0.769 40 H 0.247 0.753 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.092 -2.291 -26.745 27.021 hybrid contribution 0.960 -1.307 -0.508 1.700 sum 4.052 -3.598 -27.254 27.787 Atomic orbital electron populations 1.22132 0.94767 1.02377 1.02823 1.21291 0.94365 0.97726 0.84559 0.89504 1.21883 0.79365 1.02739 0.97595 1.47760 1.06824 1.21484 1.58762 1.21891 0.95769 0.90926 0.98303 1.20364 0.90194 0.81229 0.77357 1.90686 1.64430 1.39546 1.45195 1.19992 0.93484 0.94481 1.02025 1.22824 1.00112 0.98782 0.92784 1.22620 1.05283 0.94792 1.02651 1.26016 0.98062 1.01808 0.88523 1.84944 1.46599 1.25640 1.38738 1.73999 1.15464 0.96660 1.16373 1.46301 1.68511 1.15027 1.08895 1.20271 0.76786 0.87118 0.84026 1.90659 1.49151 1.15778 1.84684 1.23248 1.04546 1.03185 0.96123 1.84634 1.87166 1.16759 1.03241 1.22350 1.50132 0.98798 0.95223 0.89356 1.24703 0.93482 0.98169 0.94936 1.69951 1.43760 1.35706 1.02453 0.86740 0.79241 0.85442 0.80435 1.19261 1.20027 1.15999 0.92292 0.91316 0.91811 0.88902 0.89163 0.92158 0.90484 0.90720 0.86746 0.86739 0.81303 0.76862 0.75281 0.88738 0.88646 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.48 37.16 0.35 -1.43 16 2 C 0.13 1.52 2.88 -67.93 -0.20 1.33 16 3 H 0.09 1.13 7.58 -51.93 -0.39 0.74 16 4 C 0.11 0.94 5.14 -4.05 -0.02 0.92 16 5 N -0.61 -5.42 2.77 -181.58 -0.50 -5.92 16 6 C 0.07 0.40 10.24 59.84 0.61 1.01 16 7 C 0.52 5.88 6.97 -10.98 -0.08 5.80 16 8 O -0.52 -7.81 12.89 5.56 0.07 -7.74 16 9 C -0.06 -0.53 4.85 -29.04 -0.14 -0.67 16 10 C 0.01 0.17 6.10 -82.10 -0.50 -0.33 16 11 C -0.23 -1.95 11.12 -39.38 -0.44 -2.39 16 12 C -0.06 -0.53 12.30 29.74 0.37 -0.16 16 13 O 0.11 1.48 11.20 17.19 0.19 1.67 16 14 N -0.33 -4.95 11.46 33.42 0.38 -4.57 16 15 N -0.73 -11.41 4.48 -53.80 -0.24 -11.65 16 16 C 0.53 10.64 7.81 -10.99 -0.09 10.55 16 17 O -0.53 -11.94 15.52 5.56 0.09 -11.86 16 18 C -0.12 -2.69 6.16 36.01 0.22 -2.47 16 19 S -0.14 -3.91 18.55 -107.50 -1.99 -5.90 16 20 C -0.52 -15.79 10.04 30.94 0.31 -15.48 16 21 H 0.09 2.85 8.03 -52.49 -0.42 2.43 16 22 C 0.10 2.91 5.50 -17.43 -0.10 2.81 16 23 N -0.88 -27.64 13.97 55.49 0.78 -26.86 16 24 Si 0.86 22.60 27.74 -169.99 -4.72 17.89 16 25 H -0.27 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.24 -6.21 6.74 56.52 0.38 -5.83 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.53 8.07 -51.93 -0.42 0.11 16 32 H 0.09 0.88 7.42 -51.93 -0.39 0.49 16 33 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.08 0.39 8.07 -51.93 -0.42 -0.03 16 35 H 0.07 0.36 6.44 -51.93 -0.33 0.02 16 36 H 0.11 0.57 8.10 -51.93 -0.42 0.15 16 37 H 0.11 0.95 7.40 -51.93 -0.38 0.57 16 38 H 0.17 0.83 8.06 -52.48 -0.42 0.41 16 39 H 0.21 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.41 6.54 5.81 -40.82 -0.24 6.30 16 41 H 0.09 2.06 8.14 -51.92 -0.42 1.63 16 42 H 0.10 2.12 8.14 -51.92 -0.42 1.69 16 43 H 0.27 7.82 8.31 -40.82 -0.34 7.49 16 LS Contribution 378.34 15.07 5.70 5.70 Total: -1.00 -39.86 378.34 -5.89 -45.75 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -5.95 Total: 4.01 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: 0.31 Total: -0.52 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: 0.41 Total: -49.00 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: 0.35 Total: -17.93 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.72 Total: 17.89 kcal Atomic # 16 Polarization: -3.91 SS G_CDS: -1.99 Total: -5.90 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -39.86 -5.89 -45.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001679937388.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.735 kcal (2) G-P(sol) polarization free energy of solvation -39.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds