Wall clock time and date at job start Sat Apr 11 2020 06:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47443 * 2 1 4 4 C 1.53000 * 109.47495 * 239.99779 * 2 1 3 5 5 N 1.46493 * 109.47637 * 184.99964 * 4 2 1 6 6 C 1.46494 * 120.00444 * 269.72749 * 5 4 2 7 7 C 1.34784 * 119.99864 * 90.00039 * 5 4 2 8 8 O 1.21283 * 119.99649 * 359.72839 * 7 5 4 9 9 C 1.50694 * 119.99988 * 179.72721 * 7 5 4 10 10 C 1.50698 * 109.47166 * 179.97438 * 9 7 5 11 11 C 1.41382 * 126.80382 * 124.70753 * 10 9 7 12 12 C 1.35450 * 103.98724 * 179.89091 * 11 10 9 13 13 O 1.34037 * 106.44669 * 0.37273 * 12 11 10 14 14 N 1.20921 * 111.56701 * 359.74481 * 13 12 11 15 15 N 1.46508 * 109.47068 * 119.99937 * 2 1 3 16 16 C 1.34770 * 119.99848 * 275.00290 * 15 2 1 17 17 O 1.21278 * 120.00432 * 359.97438 * 16 15 2 18 18 C 1.50705 * 119.99598 * 180.02562 * 16 15 2 19 19 S 1.81001 * 109.46655 * 179.97438 * 18 16 15 20 20 C 1.76209 * 99.99853 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99690 * 0.02562 * 20 19 18 22 22 C 1.38794 * 119.99875 * 179.97438 * 20 19 18 23 23 N 1.31631 * 119.99779 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00300 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.46925 * 89.99990 * 24 22 20 26 26 H 1.48497 * 109.47024 * 209.99899 * 24 22 20 27 27 H 1.48498 * 109.46994 * 329.99935 * 24 22 20 28 28 H 1.09000 * 109.47443 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47159 * 300.00162 * 1 2 3 30 30 H 1.09001 * 109.47066 * 59.99820 * 1 2 3 31 31 H 1.09002 * 109.46747 * 64.99793 * 4 2 1 32 32 H 1.08996 * 109.47074 * 305.00519 * 4 2 1 33 33 H 1.08995 * 109.47693 * 270.27497 * 6 5 4 34 34 H 1.09003 * 109.47006 * 30.27410 * 6 5 4 35 35 H 1.09004 * 109.47665 * 150.27102 * 6 5 4 36 36 H 1.08998 * 109.47224 * 299.99701 * 9 7 5 37 37 H 1.09002 * 109.47054 * 60.00213 * 9 7 5 38 38 H 1.08005 * 128.00407 * 0.02562 * 11 10 9 39 39 H 1.08001 * 126.77440 * 180.09926 * 12 11 10 40 40 H 0.96999 * 119.99378 * 94.99936 * 15 2 1 41 41 H 1.09003 * 109.46951 * 299.99185 * 18 16 15 42 42 H 1.08994 * 109.47129 * 59.99902 * 18 16 15 43 43 H 0.97002 * 120.00307 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.3344 0.2310 -1.7665 7 6 4.0758 -1.8988 -0.6115 8 8 3.3850 -2.7742 -0.1346 9 6 5.5776 -2.0099 -0.5566 10 6 5.9615 -3.2914 0.1372 11 6 6.7976 -4.3120 -0.3709 12 6 6.8298 -5.2332 0.6216 13 8 6.0563 -4.7566 1.6070 14 7 5.5843 -3.6807 1.3207 15 7 2.0183 -0.6906 1.1962 16 6 2.1470 -0.0183 2.3572 17 8 1.8589 1.1585 2.4116 18 6 2.6498 -0.7286 3.5875 19 16 2.7112 0.4346 4.9729 20 6 3.3142 -0.6307 6.2403 21 1 3.5236 -1.6671 6.0203 22 6 3.5211 -0.1376 7.5211 23 7 3.9720 -0.9332 8.4678 24 14 3.1595 1.6552 7.9015 25 1 1.7488 1.7924 8.3447 26 1 4.0653 2.1247 8.9806 27 1 3.3770 2.4736 6.6817 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.7517 -0.1584 -2.1369 32 1 1.6054 -1.7198 -1.2951 33 1 4.5381 0.0038 -2.8129 34 1 3.8114 1.1849 -1.6971 35 1 5.2745 0.2915 -1.2182 36 1 5.9791 -2.0106 -1.5699 37 1 5.9847 -1.1625 -0.0050 38 1 7.2969 -4.3477 -1.3279 39 1 7.3684 -6.1693 0.6177 40 1 2.2490 -1.6318 1.1526 41 1 1.9776 -1.5509 3.8326 42 1 3.6491 -1.1204 3.3979 43 1 4.1162 -0.5888 9.3631 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001679937388.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:37 Heat of formation + Delta-G solvation = -34.728317 kcal Electronic energy + Delta-G solvation = -27798.507055 eV Core-core repulsion = 23779.699635 eV Total energy + Delta-G solvation = -4018.807421 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.83195 -41.45453 -40.40866 -37.49691 -35.85333 -35.47765 -34.71854 -32.90898 -32.55891 -30.76936 -30.08289 -28.27477 -27.90401 -26.69707 -24.03346 -23.34387 -22.36076 -21.52102 -20.29892 -19.90179 -18.73439 -18.57506 -18.17750 -17.74699 -17.63185 -17.14815 -17.11867 -16.49123 -16.45555 -15.86963 -15.64480 -15.02091 -14.80969 -14.72772 -14.59705 -14.15336 -14.13648 -14.00753 -13.69197 -13.42160 -13.39714 -13.34759 -13.27572 -13.04631 -13.01690 -12.74756 -12.61024 -12.15996 -12.13724 -11.89151 -11.23312 -11.20860 -11.04604 -10.79709 -10.64233 -10.49855 -10.22162 -9.68574 -9.06005 -8.54889 -6.27722 0.73031 0.91957 1.28822 1.31041 1.42229 1.45797 1.50674 1.52785 1.99579 2.21041 2.26856 2.56719 2.65924 2.82438 3.21679 3.51712 3.68424 3.76431 3.84681 4.02982 4.11205 4.17214 4.21245 4.33585 4.34574 4.40252 4.42784 4.45489 4.62701 4.67505 4.70263 4.81211 4.87516 4.95661 4.99571 5.20040 5.23094 5.39984 5.55628 5.66795 6.06997 6.26544 6.38743 6.88451 7.05288 7.14624 7.47085 8.58508 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009162 B = 0.003884 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3055.265343 B = 7207.648761 C = 9552.622792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.121 3.879 3 H 0.081 0.919 4 C 0.113 3.887 5 N -0.612 5.612 6 C 0.066 3.934 7 C 0.511 3.489 8 O -0.569 6.569 9 C -0.059 4.059 10 C 0.004 3.996 11 C -0.229 4.229 12 C -0.060 4.060 13 O 0.076 5.924 14 N -0.390 5.390 15 N -0.711 5.711 16 C 0.537 3.463 17 O -0.555 6.555 18 C -0.111 4.111 19 S -0.154 6.154 20 C -0.537 4.537 21 H 0.051 0.949 22 C 0.046 3.954 23 N -0.917 5.917 24 Si 0.920 3.080 25 H -0.259 1.259 26 H -0.253 1.253 27 H -0.236 1.236 28 H 0.061 0.939 29 H 0.036 0.964 30 H 0.100 0.900 31 H 0.136 0.864 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.159 0.841 37 H 0.117 0.883 38 H 0.209 0.791 39 H 0.258 0.742 40 H 0.408 0.592 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.218 -3.064 -31.513 32.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.016 3.984 3 H 0.099 0.901 4 C -0.010 4.010 5 N -0.344 5.344 6 C -0.076 4.076 7 C 0.300 3.700 8 O -0.449 6.449 9 C -0.099 4.099 10 C -0.156 4.156 11 C -0.250 4.250 12 C -0.140 4.140 13 O 0.010 5.990 14 N -0.095 5.095 15 N -0.367 5.367 16 C 0.322 3.678 17 O -0.434 6.434 18 C -0.262 4.262 19 S 0.072 5.928 20 C -0.684 4.684 21 H 0.070 0.930 22 C -0.159 4.159 23 N -0.555 5.555 24 Si 0.741 3.259 25 H -0.184 1.184 26 H -0.177 1.177 27 H -0.159 1.159 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.119 0.881 31 H 0.154 0.846 32 H 0.100 0.900 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.177 0.823 37 H 0.135 0.865 38 H 0.226 0.774 39 H 0.273 0.727 40 H 0.248 0.752 41 H 0.114 0.886 42 H 0.110 0.890 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.667 -1.085 -30.095 30.337 hybrid contribution 0.827 -1.819 0.364 2.031 sum 4.494 -2.904 -29.731 30.208 Atomic orbital electron populations 1.22087 0.93762 1.02649 1.03059 1.21665 0.95228 0.97431 0.84095 0.90124 1.21917 0.79462 1.02479 0.97154 1.47901 1.07178 1.21467 1.57839 1.22185 0.95466 0.90003 0.99935 1.20838 0.91090 0.81261 0.76854 1.90665 1.65487 1.41424 1.47281 1.20189 0.92080 0.93391 1.04205 1.23508 0.99768 1.00151 0.92147 1.23118 1.04547 0.93371 1.03975 1.26959 0.96655 1.03060 0.87353 1.84856 1.47905 1.25673 1.40576 1.73998 1.18318 0.98208 1.18950 1.46283 1.66796 1.14908 1.08759 1.19769 0.76964 0.86600 0.84423 1.90642 1.50933 1.16667 1.85126 1.23213 1.04755 1.02316 0.95878 1.84365 1.86869 1.17610 1.03921 1.22461 1.50943 0.97961 0.97079 0.93044 1.25630 0.92923 1.02814 0.94527 1.70032 1.44286 1.37960 1.03215 0.85806 0.79804 0.79629 0.80704 1.18391 1.17739 1.15949 0.92003 0.94463 0.88139 0.84582 0.90017 0.89037 0.89967 0.90215 0.82326 0.86468 0.77438 0.72661 0.75238 0.88627 0.88977 0.91195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 9.48 71.98 0.68 -2.52 16 2 C 0.12 2.71 2.88 44.99 0.13 2.84 16 3 H 0.08 1.97 7.58 -2.39 -0.02 1.95 16 4 C 0.11 1.68 5.14 86.38 0.44 2.12 16 5 N -0.61 -9.29 2.77 -846.78 -2.35 -11.64 16 6 C 0.07 0.47 10.24 127.77 1.31 1.78 16 7 C 0.51 10.97 6.97 87.65 0.61 11.58 16 8 O -0.57 -17.23 12.89 -3.04 -0.04 -17.27 16 9 C -0.06 -0.95 4.85 29.10 0.14 -0.81 16 10 C 0.00 0.08 6.10 43.58 0.27 0.35 16 11 C -0.23 -3.42 11.12 22.40 0.25 -3.17 16 12 C -0.06 -0.95 12.30 67.18 0.83 -0.13 16 13 O 0.08 2.12 11.20 71.67 0.80 2.92 16 14 N -0.39 -12.50 11.46 -49.55 -0.57 -13.07 16 15 N -0.71 -22.30 4.48 -442.53 -1.98 -24.28 16 16 C 0.54 21.83 7.81 87.66 0.68 22.52 16 17 O -0.56 -25.31 15.52 -3.02 -0.05 -25.35 16 18 C -0.11 -5.13 6.16 71.24 0.44 -4.69 16 19 S -0.15 -8.51 18.55 -56.49 -1.05 -9.56 16 20 C -0.54 -34.01 10.04 67.95 0.68 -33.33 16 21 H 0.05 3.52 8.03 -2.91 -0.02 3.50 16 22 C 0.05 2.88 5.50 84.86 0.47 3.35 16 23 N -0.92 -58.64 13.97 21.65 0.30 -58.34 16 24 Si 0.92 46.85 27.74 68.60 1.90 48.75 16 25 H -0.26 -12.81 7.11 99.48 0.71 -12.11 16 26 H -0.25 -11.92 7.11 99.48 0.71 -11.21 16 27 H -0.24 -11.93 6.74 99.48 0.67 -11.26 16 28 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.14 0.91 8.07 -2.39 -0.02 0.89 16 32 H 0.08 1.43 7.42 -2.39 -0.02 1.41 16 33 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16 34 H 0.08 0.55 8.07 -2.39 -0.02 0.53 16 35 H 0.08 0.52 6.44 -2.38 -0.02 0.50 16 36 H 0.16 0.99 8.10 -2.39 -0.02 0.97 16 37 H 0.12 1.82 7.40 -2.39 -0.02 1.80 16 38 H 0.21 1.22 8.06 -2.91 -0.02 1.20 16 39 H 0.26 1.27 8.06 -2.91 -0.02 1.25 16 40 H 0.41 13.35 5.81 -92.71 -0.54 12.81 16 41 H 0.10 4.37 8.14 -2.39 -0.02 4.35 16 42 H 0.09 4.31 8.14 -2.40 -0.02 4.29 16 43 H 0.28 16.30 8.31 -92.71 -0.77 15.53 16 Total: -1.00 -92.31 378.34 4.36 -87.95 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.46 Total: 20.01 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: 6.93 Total: -0.12 kcal Atomic # 7 Polarization: -102.74 SS G_CDS: -4.60 Total: -107.33 kcal Atomic # 8 Polarization: -40.41 SS G_CDS: 0.72 Total: -39.70 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 1.90 Total: 48.75 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.05 Total: -9.56 kcal Total: -92.31 4.36 -87.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001679937388.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.221 kcal (2) G-P(sol) polarization free energy of solvation -92.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds