Wall clock time and date at job start Sat Apr 11 2020 06:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47065 * 240.00872 * 2 1 3 5 5 C 1.52992 * 109.47159 * 174.99654 * 4 2 1 6 6 H 1.09005 * 109.47452 * 55.00229 * 5 4 2 7 7 C 1.53005 * 109.47319 * 174.99831 * 5 4 2 8 8 N 1.46497 * 109.47750 * 294.99910 * 5 4 2 9 9 C 1.34770 * 120.00426 * 154.99811 * 8 5 4 10 10 O 1.21496 * 120.00183 * 0.02562 * 9 8 5 11 11 C 1.48329 * 120.00173 * 180.02562 * 9 8 5 12 12 C 1.42278 * 126.94378 * 179.71185 * 11 9 8 13 13 C 1.35309 * 103.92452 * 179.90566 * 12 11 9 14 14 O 1.34017 * 106.67180 * 0.34884 * 13 12 11 15 15 N 1.20916 * 111.84319 * 359.76029 * 14 13 12 16 16 N 1.46497 * 109.47313 * 120.00897 * 2 1 3 17 17 C 1.34777 * 119.99525 * 274.99614 * 16 2 1 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 2 19 19 C 1.50700 * 119.99675 * 179.72583 * 17 16 2 20 20 S 1.80997 * 109.47151 * 180.27780 * 19 17 16 21 21 C 1.76196 * 100.00314 * 179.97438 * 20 19 17 22 22 H 1.08005 * 120.00018 * 0.02562 * 21 20 19 23 23 C 1.38799 * 120.00626 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99674 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00584 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46793 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47282 * 119.99523 * 25 23 21 28 28 H 1.48500 * 109.47237 * 240.00020 * 25 23 21 29 29 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46617 * 299.99415 * 1 2 3 31 31 H 1.09003 * 109.47371 * 59.99288 * 1 2 3 32 32 H 1.09002 * 109.46733 * 294.99544 * 4 2 1 33 33 H 1.09003 * 109.47212 * 54.99369 * 4 2 1 34 34 H 1.09000 * 109.47011 * 180.02562 * 7 5 4 35 35 H 1.09003 * 109.46679 * 300.00294 * 7 5 4 36 36 H 1.08991 * 109.46979 * 60.00161 * 7 5 4 37 37 H 0.97001 * 119.99320 * 335.00233 * 8 5 4 38 38 H 1.07998 * 128.03469 * 0.02693 * 12 11 9 39 39 H 1.07998 * 126.66928 * 180.08223 * 13 12 11 40 40 H 0.97000 * 120.00580 * 95.00360 * 16 2 1 41 41 H 1.09009 * 109.47352 * 300.27556 * 19 17 16 42 42 H 1.08998 * 109.47585 * 60.27844 * 19 17 16 43 43 H 0.97003 * 120.00297 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3139 6 1 3.9955 -0.9922 -0.3871 7 6 4.0851 -1.4379 -2.4928 8 7 3.9480 0.7896 -1.4925 9 6 5.1611 1.2137 -1.0868 10 8 5.9373 0.4327 -0.5732 11 6 5.5489 2.6340 -1.2671 12 6 6.7806 3.2386 -0.8908 13 6 6.6378 4.5303 -1.2676 14 8 5.4156 4.6408 -1.8062 15 7 4.8242 3.5862 -1.8000 16 7 2.0184 -0.6908 1.1960 17 6 2.1472 -0.0185 2.3570 18 8 1.8583 1.1582 2.4118 19 6 2.6437 -0.7305 3.5889 20 16 2.6984 0.4307 4.9762 21 6 3.2947 -0.6363 6.2451 22 1 3.5050 -1.6725 6.0248 23 6 3.4953 -0.1451 7.5277 24 7 3.2404 1.1182 7.7959 25 14 4.1282 -1.2762 8.8729 26 1 4.3356 -2.6378 8.3176 27 1 5.4161 -0.7524 9.3947 28 1 3.1355 -1.3377 9.9756 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.7517 -1.7714 -1.2058 33 1 1.6053 -0.2615 -2.1371 34 1 5.1715 -1.3613 -2.5384 35 1 3.8001 -2.4816 -2.3599 36 1 3.6546 -1.0589 -3.4196 37 1 3.3284 1.4131 -1.9028 38 1 7.6324 2.7740 -0.4166 39 1 7.3655 5.3199 -1.1525 40 1 2.2492 -1.6319 1.1524 41 1 1.9698 -1.5528 3.8298 42 1 3.6437 -1.1227 3.4038 43 1 3.3802 1.4615 8.6923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001681538551.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:40 Heat of formation + Delta-G solvation = -20.027372 kcal Electronic energy + Delta-G solvation = -27158.914326 eV Core-core repulsion = 23140.744387 eV Total energy + Delta-G solvation = -4018.169940 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -45.32258 -40.20041 -39.23960 -37.00476 -34.75481 -34.24705 -32.40549 -32.34924 -31.65463 -30.82185 -28.51898 -27.08721 -25.45844 -25.27251 -23.24615 -22.17969 -21.30287 -20.81211 -20.18115 -18.81296 -17.98280 -17.82230 -17.13996 -16.63474 -16.30572 -15.95541 -15.15602 -14.88055 -14.78805 -14.77114 -14.30845 -14.04555 -13.98829 -13.64773 -13.61539 -13.16819 -12.93642 -12.72769 -12.59419 -12.41410 -12.31663 -11.97658 -11.92792 -11.58531 -11.18340 -11.04918 -10.99053 -10.95680 -10.72860 -10.69742 -10.45544 -10.03591 -9.77831 -9.39258 -9.34488 -9.05276 -8.87647 -8.20033 -6.46604 -6.19301 -3.89212 0.89084 1.46658 2.62825 2.89931 2.99089 3.06872 3.14183 3.23381 3.30023 3.35235 3.69967 3.75233 4.22859 4.24405 4.39032 4.53962 4.77645 4.81555 4.99746 5.06834 5.13062 5.15930 5.16413 5.21882 5.25249 5.34051 5.42348 5.48998 5.60642 5.60957 5.69136 5.75194 5.90085 5.93033 6.01242 6.16916 6.17562 6.19585 6.69451 7.11409 7.62497 7.70566 7.74260 7.89248 8.38108 8.66027 9.26234 10.88246 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009920 B = 0.003001 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2821.959033 B = 9327.980407 C =10761.036289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.141 3.859 3 H 0.087 0.913 4 C -0.136 4.136 5 C 0.139 3.861 6 H 0.097 0.903 7 C -0.163 4.163 8 N -0.708 5.708 9 C 0.602 3.398 10 O -0.516 6.516 11 C -0.027 4.027 12 C -0.183 4.183 13 C -0.058 4.058 14 O 0.122 5.878 15 N -0.332 5.332 16 N -0.734 5.734 17 C 0.534 3.466 18 O -0.517 6.517 19 C -0.154 4.154 20 S -0.061 6.061 21 C -0.534 4.534 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.405 0.595 38 H 0.182 0.818 39 H 0.226 0.774 40 H 0.396 0.604 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.365 -0.256 -25.220 25.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.036 3.964 3 H 0.105 0.895 4 C -0.174 4.174 5 C 0.035 3.965 6 H 0.115 0.885 7 C -0.222 4.222 8 N -0.361 5.361 9 C 0.386 3.614 10 O -0.389 6.389 11 C -0.186 4.186 12 C -0.205 4.205 13 C -0.138 4.138 14 O 0.046 5.954 15 N -0.033 5.033 16 N -0.388 5.388 17 C 0.320 3.680 18 O -0.391 6.391 19 C -0.304 4.304 20 S 0.166 5.834 21 C -0.682 4.682 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.504 5.504 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.240 0.760 38 H 0.200 0.800 39 H 0.242 0.758 40 H 0.230 0.770 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.187 1.232 -25.132 25.190 hybrid contribution 1.371 -2.373 1.055 2.936 sum 2.557 -1.141 -24.077 24.239 Atomic orbital electron populations 1.22183 0.95192 1.02092 1.02715 1.20880 0.94018 0.97758 0.83744 0.89473 1.22256 0.94040 1.02670 0.98430 1.21095 0.94656 0.80432 1.00281 0.88541 1.22189 1.02180 0.99986 0.97810 1.45869 1.16270 1.11704 1.62241 1.16840 0.82223 0.84227 0.78136 1.90826 1.51178 1.54225 1.42686 1.23588 0.94298 0.96209 1.04540 1.22817 0.99555 0.93477 1.04674 1.26064 0.88560 0.99509 0.99696 1.84786 1.23952 1.27690 1.58996 1.74147 1.19712 0.92267 1.17205 1.46079 1.69431 1.13779 1.09544 1.20288 0.76674 0.87228 0.83793 1.90692 1.48230 1.15766 1.84450 1.23535 1.03694 1.04809 0.98409 1.85370 1.86479 1.13046 0.98499 1.22915 1.50958 0.98162 0.96186 0.90906 1.24988 0.95100 0.95536 0.97960 1.70033 1.45755 1.13245 1.21321 0.86120 0.78508 0.80179 0.80715 1.19605 1.20557 1.20581 0.92477 0.91564 0.91962 0.89302 0.89704 0.91900 0.91202 0.92341 0.75970 0.80049 0.75787 0.76972 0.89280 0.89292 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.48 37.16 0.35 -1.37 16 2 C 0.14 1.59 2.52 -67.93 -0.17 1.42 16 3 H 0.09 1.21 7.06 -51.93 -0.37 0.85 16 4 C -0.14 -1.01 4.29 -26.73 -0.11 -1.13 16 5 C 0.14 1.32 2.52 -67.93 -0.17 1.14 16 6 H 0.10 1.15 7.05 -51.93 -0.37 0.78 16 7 C -0.16 -1.28 9.48 37.16 0.35 -0.92 16 8 N -0.71 -7.70 4.45 -54.60 -0.24 -7.94 16 9 C 0.60 8.29 7.81 -12.11 -0.09 8.19 16 10 O -0.52 -8.59 16.62 5.37 0.09 -8.50 16 11 C -0.03 -0.34 7.19 -82.52 -0.59 -0.93 16 12 C -0.18 -1.84 10.99 -39.07 -0.43 -2.27 16 13 C -0.06 -0.41 12.28 29.69 0.36 -0.05 16 14 O 0.12 1.17 11.18 17.24 0.19 1.36 16 15 N -0.33 -3.90 11.84 33.30 0.39 -3.50 16 16 N -0.73 -9.82 4.45 -53.80 -0.24 -10.06 16 17 C 0.53 10.23 7.81 -10.98 -0.09 10.14 16 18 O -0.52 -11.98 15.53 5.55 0.09 -11.89 16 19 C -0.15 -3.22 6.16 36.01 0.22 -3.00 16 20 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 21 C -0.53 -15.55 9.50 30.94 0.29 -15.26 16 22 H 0.07 2.02 7.80 -52.48 -0.41 1.61 16 23 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 24 N -0.87 -26.57 13.22 55.49 0.73 -25.84 16 25 Si 0.92 21.78 29.55 -169.99 -5.02 16.76 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 28 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.41 3.82 8.36 -40.82 -0.34 3.48 16 38 H 0.18 1.61 8.06 -52.49 -0.42 1.19 16 39 H 0.23 0.49 8.06 -52.49 -0.42 0.07 16 40 H 0.40 4.19 8.60 -40.82 -0.35 3.84 16 41 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 42 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 43 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 388.98 15.07 5.86 5.86 Total: -1.00 -38.46 388.98 -6.57 -45.03 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -6.04 Total: 4.62 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -0.17 Total: -2.00 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: 0.65 Total: -47.35 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: 0.37 Total: -19.03 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -38.46 -6.57 -45.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001681538551.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.007 kcal (2) G-P(sol) polarization free energy of solvation -38.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds