Wall clock time and date at job start Sat Apr 11 2020 06:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47065 * 240.00872 * 2 1 3 5 5 C 1.52992 * 109.47159 * 174.99654 * 4 2 1 6 6 H 1.09005 * 109.47452 * 55.00229 * 5 4 2 7 7 C 1.53005 * 109.47319 * 174.99831 * 5 4 2 8 8 N 1.46497 * 109.47750 * 294.99910 * 5 4 2 9 9 C 1.34770 * 120.00426 * 154.99811 * 8 5 4 10 10 O 1.21496 * 120.00183 * 0.02562 * 9 8 5 11 11 C 1.48329 * 120.00173 * 180.02562 * 9 8 5 12 12 C 1.42278 * 126.94378 * 179.71185 * 11 9 8 13 13 C 1.35309 * 103.92452 * 179.90566 * 12 11 9 14 14 O 1.34017 * 106.67180 * 0.34884 * 13 12 11 15 15 N 1.20916 * 111.84319 * 359.76029 * 14 13 12 16 16 N 1.46497 * 109.47313 * 120.00897 * 2 1 3 17 17 C 1.34777 * 119.99525 * 274.99614 * 16 2 1 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 2 19 19 C 1.50700 * 119.99675 * 179.72583 * 17 16 2 20 20 S 1.80997 * 109.47151 * 180.27780 * 19 17 16 21 21 C 1.76196 * 100.00314 * 179.97438 * 20 19 17 22 22 H 1.08005 * 120.00018 * 0.02562 * 21 20 19 23 23 C 1.38799 * 120.00626 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99674 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00584 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46793 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47282 * 119.99523 * 25 23 21 28 28 H 1.48500 * 109.47237 * 240.00020 * 25 23 21 29 29 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46617 * 299.99415 * 1 2 3 31 31 H 1.09003 * 109.47371 * 59.99288 * 1 2 3 32 32 H 1.09002 * 109.46733 * 294.99544 * 4 2 1 33 33 H 1.09003 * 109.47212 * 54.99369 * 4 2 1 34 34 H 1.09000 * 109.47011 * 180.02562 * 7 5 4 35 35 H 1.09003 * 109.46679 * 300.00294 * 7 5 4 36 36 H 1.08991 * 109.46979 * 60.00161 * 7 5 4 37 37 H 0.97001 * 119.99320 * 335.00233 * 8 5 4 38 38 H 1.07998 * 128.03469 * 0.02693 * 12 11 9 39 39 H 1.07998 * 126.66928 * 180.08223 * 13 12 11 40 40 H 0.97000 * 120.00580 * 95.00360 * 16 2 1 41 41 H 1.09009 * 109.47352 * 300.27556 * 19 17 16 42 42 H 1.08998 * 109.47585 * 60.27844 * 19 17 16 43 43 H 0.97003 * 120.00297 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3139 6 1 3.9955 -0.9922 -0.3871 7 6 4.0851 -1.4379 -2.4928 8 7 3.9480 0.7896 -1.4925 9 6 5.1611 1.2137 -1.0868 10 8 5.9373 0.4327 -0.5732 11 6 5.5489 2.6340 -1.2671 12 6 6.7806 3.2386 -0.8908 13 6 6.6378 4.5303 -1.2676 14 8 5.4156 4.6408 -1.8062 15 7 4.8242 3.5862 -1.8000 16 7 2.0184 -0.6908 1.1960 17 6 2.1472 -0.0185 2.3570 18 8 1.8583 1.1582 2.4118 19 6 2.6437 -0.7305 3.5889 20 16 2.6984 0.4307 4.9762 21 6 3.2947 -0.6363 6.2451 22 1 3.5050 -1.6725 6.0248 23 6 3.4953 -0.1451 7.5277 24 7 3.2404 1.1182 7.7959 25 14 4.1282 -1.2762 8.8729 26 1 4.3356 -2.6378 8.3176 27 1 5.4161 -0.7524 9.3947 28 1 3.1355 -1.3377 9.9756 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.7517 -1.7714 -1.2058 33 1 1.6053 -0.2615 -2.1371 34 1 5.1715 -1.3613 -2.5384 35 1 3.8001 -2.4816 -2.3599 36 1 3.6546 -1.0589 -3.4196 37 1 3.3284 1.4131 -1.9028 38 1 7.6324 2.7740 -0.4166 39 1 7.3655 5.3199 -1.1525 40 1 2.2492 -1.6319 1.1524 41 1 1.9698 -1.5528 3.8298 42 1 3.6437 -1.1227 3.4038 43 1 3.3802 1.4615 8.6923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001681538551.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:40 Heat of formation + Delta-G solvation = -49.541134 kcal Electronic energy + Delta-G solvation = -27160.194139 eV Core-core repulsion = 23140.744387 eV Total energy + Delta-G solvation = -4019.449752 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -46.13775 -41.24386 -40.57629 -38.07864 -35.87891 -35.09152 -34.61155 -33.25498 -32.74103 -31.74838 -30.01573 -27.81012 -27.68347 -26.16129 -24.02510 -23.15066 -22.23270 -21.81886 -21.37578 -19.90549 -19.55219 -18.81362 -18.13113 -17.82285 -17.57676 -17.07805 -16.90628 -16.42566 -16.11519 -15.92432 -15.65941 -15.14470 -14.91150 -14.83911 -14.55466 -14.48397 -14.29117 -13.77673 -13.67534 -13.35331 -13.19091 -13.13708 -13.01669 -12.92900 -12.79713 -12.62412 -12.49449 -12.01535 -11.80184 -11.72161 -11.56563 -11.50026 -11.18079 -10.94386 -10.75921 -10.31516 -10.29548 -10.12726 -8.69872 -8.37275 -6.15749 0.03383 0.74339 1.24646 1.39514 1.44656 1.56593 1.59842 1.78167 2.00482 2.24116 2.27149 2.29622 2.85422 2.96816 3.29365 3.47921 3.65716 3.77152 3.97314 4.00104 4.08078 4.22176 4.24037 4.32272 4.39731 4.44830 4.45436 4.61344 4.67219 4.71762 4.78647 4.87685 4.93195 5.01842 5.09409 5.25310 5.30976 5.33515 5.39098 5.55176 6.17366 6.20232 6.49444 6.86366 7.01583 7.03850 7.24429 8.72438 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009920 B = 0.003001 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2821.959033 B = 9327.980407 C =10761.036289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.137 3.863 3 H 0.057 0.943 4 C -0.120 4.120 5 C 0.133 3.867 6 H 0.069 0.931 7 C -0.155 4.155 8 N -0.698 5.698 9 C 0.593 3.407 10 O -0.558 6.558 11 C -0.059 4.059 12 C -0.213 4.213 13 C -0.024 4.024 14 O 0.126 5.874 15 N -0.348 5.348 16 N -0.708 5.708 17 C 0.534 3.466 18 O -0.565 6.565 19 C -0.131 4.131 20 S -0.150 6.150 21 C -0.548 4.548 22 H 0.081 0.919 23 C 0.014 3.986 24 N -0.911 5.911 25 Si 1.000 3.000 26 H -0.258 1.258 27 H -0.273 1.273 28 H -0.271 1.271 29 H 0.078 0.922 30 H 0.027 0.973 31 H 0.087 0.913 32 H 0.121 0.879 33 H 0.114 0.886 34 H 0.037 0.963 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.412 0.588 38 H 0.186 0.814 39 H 0.278 0.722 40 H 0.414 0.586 41 H 0.111 0.889 42 H 0.100 0.900 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.284 -1.898 -26.874 27.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.033 3.967 3 H 0.075 0.925 4 C -0.158 4.158 5 C 0.030 3.970 6 H 0.088 0.912 7 C -0.213 4.213 8 N -0.350 5.350 9 C 0.377 3.623 10 O -0.435 6.435 11 C -0.217 4.217 12 C -0.236 4.236 13 C -0.104 4.104 14 O 0.049 5.951 15 N -0.048 5.048 16 N -0.362 5.362 17 C 0.319 3.681 18 O -0.444 6.444 19 C -0.282 4.282 20 S 0.077 5.923 21 C -0.695 4.695 22 H 0.099 0.901 23 C -0.191 4.191 24 N -0.548 5.548 25 Si 0.821 3.179 26 H -0.181 1.181 27 H -0.198 1.198 28 H -0.197 1.197 29 H 0.097 0.903 30 H 0.046 0.954 31 H 0.106 0.894 32 H 0.139 0.861 33 H 0.133 0.867 34 H 0.056 0.944 35 H 0.110 0.890 36 H 0.094 0.906 37 H 0.248 0.752 38 H 0.203 0.797 39 H 0.294 0.706 40 H 0.251 0.749 41 H 0.129 0.871 42 H 0.118 0.882 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.060 -0.461 -26.856 26.881 hybrid contribution 1.387 -1.806 1.430 2.689 sum 2.448 -2.267 -25.426 25.644 Atomic orbital electron populations 1.22131 0.94021 1.03289 1.02127 1.21095 0.94854 0.96683 0.84110 0.92482 1.22242 0.92097 1.04319 0.97106 1.21258 0.96073 0.79713 0.99996 0.91249 1.22119 1.00588 1.01000 0.97596 1.45936 1.15413 1.12624 1.61048 1.17170 0.82654 0.84686 0.77780 1.90781 1.52479 1.55376 1.44868 1.23723 0.95747 0.96068 1.06125 1.23088 0.99336 0.94880 1.06287 1.26943 0.87628 0.99509 0.96285 1.84748 1.24901 1.26854 1.58623 1.74134 1.20271 0.92562 1.17810 1.45870 1.67416 1.14443 1.08473 1.20017 0.76633 0.86610 0.84798 1.90678 1.50714 1.17714 1.85260 1.23382 1.05105 1.03340 0.96396 1.85532 1.86881 1.17460 1.02460 1.23233 1.51219 0.98379 0.96700 0.90101 1.26140 0.94941 0.97265 1.00728 1.70192 1.46856 1.15513 1.22197 0.84893 0.77921 0.78138 0.76912 1.18118 1.19839 1.19653 0.90305 0.95383 0.89373 0.86120 0.86727 0.94354 0.88986 0.90604 0.75151 0.79680 0.70613 0.74894 0.87107 0.88156 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 9.48 71.98 0.68 -2.32 16 2 C 0.14 2.89 2.52 44.99 0.11 3.00 16 3 H 0.06 1.60 7.06 -2.38 -0.02 1.58 16 4 C -0.12 -1.40 4.29 30.59 0.13 -1.27 16 5 C 0.13 2.35 2.52 44.99 0.11 2.46 16 6 H 0.07 1.63 7.05 -2.38 -0.02 1.62 16 7 C -0.15 -2.11 9.48 71.98 0.68 -1.43 16 8 N -0.70 -15.30 4.45 -444.96 -1.98 -17.27 16 9 C 0.59 17.18 7.81 86.93 0.68 17.86 16 10 O -0.56 -19.78 16.62 -3.70 -0.06 -19.85 16 11 C -0.06 -1.53 7.19 42.96 0.31 -1.22 16 12 C -0.21 -4.34 10.99 22.60 0.25 -4.09 16 13 C -0.02 -0.30 12.28 67.14 0.82 0.53 16 14 O 0.13 2.30 11.18 71.85 0.80 3.10 16 15 N -0.35 -8.23 11.84 -49.49 -0.59 -8.81 16 16 N -0.71 -18.29 4.45 -442.52 -1.97 -20.26 16 17 C 0.53 20.81 7.81 87.66 0.68 21.49 16 18 O -0.57 -27.41 15.53 -3.04 -0.05 -27.46 16 19 C -0.13 -5.54 6.16 71.24 0.44 -5.10 16 20 S -0.15 -8.71 20.57 -56.49 -1.16 -9.87 16 21 C -0.55 -32.35 9.50 67.95 0.65 -31.71 16 22 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 23 C 0.01 0.81 5.49 84.86 0.47 1.28 16 24 N -0.91 -57.12 13.22 21.65 0.29 -56.84 16 25 Si 1.00 44.66 29.55 68.60 2.03 46.69 16 26 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 27 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 28 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 29 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.09 1.23 8.14 -2.39 -0.02 1.22 16 32 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.04 0.72 8.14 -2.39 -0.02 0.71 16 35 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.41 7.70 8.36 -92.71 -0.78 6.93 16 38 H 0.19 3.46 8.06 -2.91 -0.02 3.44 16 39 H 0.28 0.14 8.06 -2.91 -0.02 0.12 16 40 H 0.41 7.85 8.60 -92.71 -0.80 7.05 16 41 H 0.11 4.17 8.14 -2.39 -0.02 4.16 16 42 H 0.10 4.00 8.14 -2.40 -0.02 3.98 16 43 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -90.88 388.98 2.81 -88.06 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: -0.52 Total: 23.02 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 6.02 Total: -0.51 kcal Atomic # 7 Polarization: -98.94 SS G_CDS: -4.25 Total: -103.19 kcal Atomic # 8 Polarization: -44.90 SS G_CDS: 0.69 Total: -44.20 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 16 Polarization: -8.71 SS G_CDS: -1.16 Total: -9.87 kcal Total: -90.88 2.81 -88.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001681538551.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.522 kcal (2) G-P(sol) polarization free energy of solvation -90.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds