Wall clock time and date at job start Sat Apr 11 2020 06:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 5 5 C 1.53003 * 109.46754 * 174.99829 * 4 2 1 6 6 H 1.08994 * 109.47463 * 304.99988 * 5 4 2 7 7 C 1.53002 * 109.46845 * 184.99561 * 5 4 2 8 8 N 1.46501 * 109.47136 * 65.00218 * 5 4 2 9 9 C 1.34780 * 120.00066 * 204.99781 * 8 5 4 10 10 O 1.21278 * 119.99642 * 0.02562 * 9 8 5 11 11 C 1.50701 * 119.99972 * 179.97438 * 9 8 5 12 12 S 1.81005 * 109.46826 * 180.02562 * 11 9 8 13 13 C 1.76203 * 99.99752 * 180.02562 * 12 11 9 14 14 H 1.07995 * 119.99938 * 359.97438 * 13 12 11 15 15 C 1.38799 * 119.99667 * 180.02562 * 13 12 11 16 16 N 1.31629 * 120.00229 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99640 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47084 * 59.99795 * 17 15 13 19 19 H 1.48497 * 109.46798 * 179.97438 * 17 15 13 20 20 H 1.48491 * 109.47266 * 299.99559 * 17 15 13 21 21 N 1.46505 * 109.47212 * 120.00008 * 2 1 3 22 22 C 1.34769 * 119.99798 * 274.99913 * 21 2 1 23 23 O 1.21494 * 120.00501 * 0.02562 * 22 21 2 24 24 C 1.48331 * 119.99565 * 179.97438 * 22 21 2 25 25 C 1.42275 * 126.93875 * 180.02562 * 24 22 21 26 26 C 1.35311 * 103.92532 * 179.97438 * 25 24 22 27 27 O 1.34020 * 106.66487 * 0.02562 * 26 25 24 28 28 N 1.20898 * 111.84857 * 359.70068 * 27 26 25 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 31 31 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 32 32 H 1.09000 * 109.47059 * 294.99790 * 4 2 1 33 33 H 1.08996 * 109.47073 * 54.99883 * 4 2 1 34 34 H 1.09003 * 109.46562 * 60.00474 * 7 5 4 35 35 H 1.09006 * 109.46653 * 179.97438 * 7 5 4 36 36 H 1.08995 * 109.47411 * 299.99886 * 7 5 4 37 37 H 0.97001 * 119.99886 * 24.99678 * 8 5 4 38 38 H 1.08999 * 109.47421 * 300.00008 * 11 9 8 39 39 H 1.08998 * 109.47079 * 60.00296 * 11 9 8 40 40 H 0.96999 * 120.00153 * 180.02562 * 16 15 13 41 41 H 0.97005 * 119.99239 * 94.99888 * 21 2 1 42 42 H 1.08003 * 128.03972 * 0.02562 * 25 24 22 43 43 H 1.07997 * 126.66810 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 1 3.8570 0.4358 -1.2678 7 6 4.0644 -1.2250 -2.6241 8 7 4.1536 -1.3342 -0.1825 9 6 5.3748 -0.9911 0.2732 10 8 5.9858 -0.0852 -0.2529 11 6 5.9803 -1.7324 1.4372 12 16 7.6118 -1.0423 1.8090 13 6 8.0745 -2.0654 3.1669 14 1 7.4033 -2.8364 3.5154 15 6 9.3010 -1.8796 3.7894 16 7 10.1188 -0.9395 3.3651 17 14 9.7912 -2.9637 5.2296 18 1 9.8216 -4.3827 4.7930 19 1 11.1378 -2.5659 5.7127 20 1 8.8040 -2.8046 6.3274 21 7 2.0183 -0.6906 1.1962 22 6 2.1471 -0.0183 2.3571 23 8 1.8577 1.1604 2.4118 24 6 2.6410 -0.7177 3.5683 25 6 2.8321 -0.1564 4.8616 26 6 3.2898 -1.1924 5.6019 27 8 3.3504 -2.2522 4.7837 28 7 2.9842 -1.9781 3.6646 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3635 0.5138 -0.8899 32 1 1.7515 -1.7715 -1.2057 33 1 1.6053 -0.2617 -2.1370 34 1 3.6262 -0.6885 -3.4658 35 1 5.1507 -1.1476 -2.6702 36 1 3.7722 -2.2741 -2.6700 37 1 3.6647 -2.0585 0.2385 38 1 5.3349 -1.6285 2.3095 39 1 6.0809 -2.7876 1.1833 40 1 10.9761 -0.8099 3.7999 41 1 2.2490 -1.6318 1.1525 42 1 2.6526 0.8602 5.1790 43 1 3.5555 -1.1696 6.6484 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001681538553.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:46 Heat of formation + Delta-G solvation = -10.855391 kcal Electronic energy + Delta-G solvation = -28339.616324 eV Core-core repulsion = 24321.844111 eV Total energy + Delta-G solvation = -4017.772213 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.10370 -40.28286 -39.16150 -37.00485 -34.57063 -34.07998 -32.44481 -32.40836 -31.68700 -30.60770 -28.51226 -27.08770 -25.46799 -25.12585 -23.05668 -22.12267 -21.36396 -21.04102 -19.94167 -18.59289 -17.82176 -17.75723 -17.02368 -16.69016 -16.24370 -15.99345 -15.18083 -14.80597 -14.79275 -14.74633 -14.15522 -13.98289 -13.87043 -13.64991 -13.42491 -13.17157 -12.92230 -12.69274 -12.64229 -12.37695 -12.32964 -11.93593 -11.78783 -11.62458 -11.11872 -11.03709 -11.02992 -10.97587 -10.75924 -10.51304 -10.38382 -9.82712 -9.79811 -9.45491 -9.35707 -9.05089 -8.80296 -8.22261 -6.48403 -6.20196 -3.90514 1.06755 1.66610 2.69612 3.03397 3.08530 3.11749 3.12876 3.23000 3.27504 3.31263 3.70475 3.86481 4.21279 4.25666 4.53648 4.57764 4.82143 4.97231 5.05858 5.12014 5.14722 5.18283 5.20893 5.28293 5.36501 5.37388 5.40758 5.49745 5.60960 5.67828 5.72360 5.79531 5.89744 5.91526 6.01419 6.15360 6.18844 6.22833 6.66262 7.15162 7.60519 7.67667 7.83813 8.00546 8.36645 8.63177 9.24835 10.87217 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010636 B = 0.004329 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.010458 B = 6466.964901 C = 8444.503731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.141 3.859 3 H 0.095 0.905 4 C -0.135 4.135 5 C 0.141 3.859 6 H 0.090 0.910 7 C -0.163 4.163 8 N -0.731 5.731 9 C 0.533 3.467 10 O -0.515 6.515 11 C -0.151 4.151 12 S -0.058 6.058 13 C -0.533 4.533 14 H 0.071 0.929 15 C 0.075 3.925 16 N -0.868 5.868 17 Si 0.917 3.083 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.274 1.274 21 N -0.706 5.706 22 C 0.606 3.394 23 O -0.521 6.521 24 C -0.031 4.031 25 C -0.185 4.185 26 C -0.049 4.049 27 O 0.126 5.874 28 N -0.332 5.332 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.390 0.610 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.268 0.732 41 H 0.401 0.599 42 H 0.180 0.820 43 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.383 -2.703 -3.097 21.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.113 0.887 4 C -0.174 4.174 5 C 0.036 3.964 6 H 0.108 0.892 7 C -0.221 4.221 8 N -0.387 5.387 9 C 0.320 3.680 10 O -0.389 6.389 11 C -0.301 4.301 12 S 0.168 5.832 13 C -0.682 4.682 14 H 0.089 0.911 15 C -0.135 4.135 16 N -0.503 5.503 17 Si 0.743 3.257 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.199 1.199 21 N -0.360 5.360 22 C 0.390 3.610 23 O -0.394 6.394 24 C -0.190 4.190 25 C -0.208 4.208 26 C -0.129 4.129 27 O 0.050 5.950 28 N -0.033 5.033 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.116 0.884 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.224 0.776 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.237 0.763 42 H 0.197 0.803 43 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -20.394 -1.198 -4.879 21.004 hybrid contribution -0.462 -1.802 2.252 2.921 sum -20.856 -3.000 -2.627 21.234 Atomic orbital electron populations 1.22184 0.94802 1.02265 1.02877 1.21081 0.94011 0.98013 0.83151 0.88720 1.22268 0.95234 1.01817 0.98036 1.20924 0.91175 0.98115 0.86140 0.89180 1.22177 1.02800 1.00728 0.96420 1.46210 1.19210 1.38274 1.35055 1.20281 0.80423 0.83410 0.83925 1.90695 1.60348 1.29556 1.58305 1.23511 1.05471 1.03178 0.97990 1.85390 1.08840 1.46915 1.42043 1.22809 1.05924 1.21184 1.18248 0.91056 1.24973 0.95308 0.95659 0.97530 1.70009 1.09381 1.30628 1.40332 0.86250 0.77759 0.80286 0.81375 1.19927 1.20846 1.19909 1.45985 1.66764 1.14038 1.09205 1.16833 0.77197 0.85678 0.81330 1.90794 1.49730 1.14582 1.84330 1.23503 1.06889 0.91338 0.97274 1.22729 1.04685 1.02318 0.91069 1.26048 1.01963 0.85591 0.99340 1.84790 1.60573 1.35570 1.14039 1.74094 1.12612 1.16226 1.00346 0.92362 0.91897 0.91247 0.90626 0.88402 0.91846 0.91562 0.92592 0.77555 0.89859 0.89426 0.92168 0.76285 0.80279 0.75897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 9.48 37.16 0.35 -0.91 16 2 C 0.14 1.34 2.57 -67.93 -0.17 1.16 16 3 H 0.09 1.11 7.58 -51.93 -0.39 0.72 16 4 C -0.14 -1.01 4.43 -26.73 -0.12 -1.12 16 5 C 0.14 1.58 2.58 -67.93 -0.17 1.41 16 6 H 0.09 1.24 7.58 -51.93 -0.39 0.85 16 7 C -0.16 -1.69 9.48 37.16 0.35 -1.34 16 8 N -0.73 -9.80 3.80 -53.80 -0.20 -10.00 16 9 C 0.53 10.22 7.81 -10.98 -0.09 10.13 16 10 O -0.52 -11.91 15.52 5.56 0.09 -11.82 16 11 C -0.15 -3.17 6.16 36.01 0.22 -2.95 16 12 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 13 C -0.53 -15.24 9.50 30.94 0.29 -14.95 16 14 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 15 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 16 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 17 Si 0.92 21.28 29.55 -169.99 -5.02 16.26 16 18 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 21 N -0.71 -7.86 3.80 -54.59 -0.21 -8.07 16 22 C 0.61 8.69 7.81 -12.11 -0.09 8.59 16 23 O -0.52 -8.81 16.61 5.37 0.09 -8.72 16 24 C -0.03 -0.43 7.19 -82.52 -0.59 -1.03 16 25 C -0.19 -2.24 10.99 -39.07 -0.43 -2.67 16 26 C -0.05 -0.50 12.28 29.69 0.36 -0.13 16 27 O 0.13 1.59 11.18 17.23 0.19 1.78 16 28 N -0.33 -4.49 11.78 33.29 0.39 -4.10 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.39 4.30 6.51 -40.82 -0.27 4.04 16 38 H 0.08 1.70 8.08 -51.92 -0.42 1.28 16 39 H 0.09 1.73 8.14 -51.92 -0.42 1.30 16 40 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 41 H 0.40 3.95 6.27 -40.82 -0.26 3.69 16 42 H 0.18 1.89 8.06 -52.48 -0.42 1.47 16 43 H 0.22 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 384.66 15.07 5.80 5.80 Total: -1.00 -37.23 384.66 -6.46 -43.69 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -5.92 Total: 6.32 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -0.18 Total: -1.79 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: 0.71 Total: -47.69 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: 0.37 Total: -18.76 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.23 -6.46 -43.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001681538553.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.834 kcal (2) G-P(sol) polarization free energy of solvation -37.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds