Wall clock time and date at job start Sat Apr 11 2020 06:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 5 5 C 1.52997 * 109.47080 * 174.99701 * 4 2 1 6 6 H 1.09005 * 109.47604 * 305.00149 * 5 4 2 7 7 C 1.53000 * 109.47147 * 184.99925 * 5 4 2 8 8 N 1.46498 * 109.47002 * 65.00543 * 5 4 2 9 9 C 1.34785 * 119.99866 * 205.00367 * 8 5 4 10 10 O 1.21495 * 119.99826 * 359.97438 * 9 8 5 11 11 C 1.48327 * 119.99881 * 179.97438 * 9 8 5 12 12 C 1.42278 * 126.93686 * 179.70611 * 11 9 8 13 13 C 1.35319 * 103.91931 * 179.90926 * 12 11 9 14 14 O 1.34018 * 106.66890 * 0.34947 * 13 12 11 15 15 N 1.20911 * 111.84676 * 359.75889 * 14 13 12 16 16 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 17 17 C 1.34777 * 119.99828 * 274.72131 * 16 2 1 18 18 O 1.21283 * 120.00222 * 0.28168 * 17 16 2 19 19 C 1.50703 * 120.00290 * 180.27728 * 17 16 2 20 20 S 1.81000 * 109.47389 * 180.02562 * 19 17 16 21 21 C 1.76198 * 99.99715 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00516 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99710 * 179.97438 * 21 20 19 24 24 N 1.31634 * 120.00163 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00011 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46661 * 60.00586 * 25 23 21 27 27 H 1.48501 * 109.47391 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47355 * 300.00441 * 25 23 21 29 29 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 30 30 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 32 32 H 1.08997 * 109.47492 * 295.00122 * 4 2 1 33 33 H 1.09007 * 109.47243 * 54.99904 * 4 2 1 34 34 H 1.08992 * 109.47249 * 300.00441 * 7 5 4 35 35 H 1.09003 * 109.47231 * 60.00586 * 7 5 4 36 36 H 1.09008 * 109.47294 * 180.02562 * 7 5 4 37 37 H 0.96994 * 120.00184 * 24.99578 * 8 5 4 38 38 H 1.07998 * 128.03644 * 0.02898 * 12 11 9 39 39 H 1.07997 * 126.66487 * 180.09114 * 13 12 11 40 40 H 0.97001 * 120.00384 * 95.00578 * 16 2 1 41 41 H 1.08998 * 109.46954 * 300.00581 * 19 17 16 42 42 H 1.09002 * 109.46946 * 59.99717 * 19 17 16 43 43 H 0.96991 * 119.99795 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5647 -0.6133 -1.3137 6 1 3.8570 0.4359 -1.2678 7 6 4.0644 -1.2250 -2.6240 8 7 4.1536 -1.3342 -0.1825 9 6 5.3747 -0.9910 0.2733 10 8 5.9872 -0.0840 -0.2543 11 6 5.9707 -1.7205 1.4190 12 6 7.2426 -1.4875 2.0127 13 6 7.3102 -2.4028 3.0071 14 8 6.1662 -3.0997 2.9666 15 7 5.4348 -2.7130 2.0849 16 7 2.0183 -0.6906 1.1962 17 6 2.1523 -0.0169 2.3557 18 8 1.8638 1.1599 2.4102 19 6 2.6605 -0.7257 3.5847 20 16 2.7270 0.4388 4.9688 21 6 3.3357 -0.6251 6.2346 22 1 3.5447 -1.6616 6.0147 23 6 3.5475 -0.1307 7.5142 24 7 3.2932 1.1328 7.7821 25 14 4.1921 -1.2586 8.8564 26 1 5.5168 -1.7974 8.4562 27 1 4.3302 -0.4938 10.1218 28 1 3.2415 -2.3814 9.0584 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.7516 -1.7715 -1.2056 33 1 1.6053 -0.2618 -2.1370 34 1 3.7722 -2.2741 -2.6699 35 1 3.6263 -0.6887 -3.4658 36 1 5.1508 -1.1485 -2.6698 37 1 3.6647 -2.0584 0.2386 38 1 7.9813 -0.7501 1.7354 39 1 8.1290 -2.5467 3.6965 40 1 2.2491 -1.6318 1.1526 41 1 1.9894 -1.5476 3.8337 42 1 3.6590 -1.1179 3.3911 43 1 3.4409 1.4781 8.6764 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001681538554.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:36 Heat of formation + Delta-G solvation = -38.064764 kcal Electronic energy + Delta-G solvation = -28348.989053 eV Core-core repulsion = 24330.036953 eV Total energy + Delta-G solvation = -4018.952100 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -46.06992 -41.38711 -40.50877 -38.12602 -35.69547 -35.07665 -34.58595 -33.50732 -32.72142 -31.65941 -29.98974 -27.81477 -27.65562 -26.11200 -23.99577 -23.14633 -22.24472 -22.20636 -21.14432 -19.83726 -19.51300 -18.74735 -18.10509 -17.89187 -17.51625 -17.16001 -16.87705 -16.50253 -16.04851 -15.95757 -15.72746 -15.03807 -14.93886 -14.66619 -14.54170 -14.51832 -14.26931 -13.78971 -13.66509 -13.30928 -13.26094 -13.17512 -12.96184 -12.85852 -12.76859 -12.62150 -12.50761 -11.93225 -11.86550 -11.74087 -11.53373 -11.48360 -11.12511 -10.97412 -10.71197 -10.48873 -10.31603 -9.98092 -8.69308 -8.34164 -6.13588 0.05876 0.76986 1.24692 1.44354 1.45975 1.55491 1.56407 1.76705 2.03062 2.21854 2.27261 2.30448 2.87058 3.00005 3.30000 3.46320 3.68187 3.78785 3.92233 4.03642 4.09598 4.17435 4.24711 4.33068 4.37440 4.39683 4.48240 4.61188 4.69886 4.72841 4.77469 4.89781 4.94213 4.96885 5.11216 5.26833 5.31894 5.35088 5.40772 5.51957 6.18004 6.19553 6.39368 6.85372 7.02129 7.06520 7.18620 8.74951 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010653 B = 0.004335 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.806502 B = 6458.010096 C = 8431.233320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.136 3.864 3 H 0.059 0.941 4 C -0.119 4.119 5 C 0.135 3.865 6 H 0.066 0.934 7 C -0.154 4.154 8 N -0.695 5.695 9 C 0.597 3.403 10 O -0.558 6.558 11 C -0.055 4.055 12 C -0.211 4.211 13 C -0.027 4.027 14 O 0.119 5.881 15 N -0.341 5.341 16 N -0.706 5.706 17 C 0.534 3.466 18 O -0.562 6.562 19 C -0.125 4.125 20 S -0.146 6.146 21 C -0.544 4.544 22 H 0.080 0.920 23 C 0.016 3.984 24 N -0.912 5.912 25 Si 0.997 3.003 26 H -0.255 1.255 27 H -0.280 1.280 28 H -0.263 1.263 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.027 0.973 32 H 0.105 0.895 33 H 0.131 0.869 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.038 0.962 37 H 0.408 0.592 38 H 0.187 0.813 39 H 0.270 0.730 40 H 0.405 0.595 41 H 0.104 0.896 42 H 0.091 0.909 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.151 -13.234 -19.949 24.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.032 3.968 3 H 0.078 0.922 4 C -0.157 4.157 5 C 0.032 3.968 6 H 0.084 0.916 7 C -0.212 4.212 8 N -0.348 5.348 9 C 0.382 3.618 10 O -0.435 6.435 11 C -0.213 4.213 12 C -0.234 4.234 13 C -0.108 4.108 14 O 0.044 5.956 15 N -0.043 5.043 16 N -0.361 5.361 17 C 0.319 3.681 18 O -0.440 6.440 19 C -0.276 4.276 20 S 0.081 5.919 21 C -0.691 4.691 22 H 0.098 0.902 23 C -0.189 4.189 24 N -0.549 5.549 25 Si 0.818 3.182 26 H -0.180 1.180 27 H -0.205 1.205 28 H -0.188 1.188 29 H 0.108 0.892 30 H 0.095 0.905 31 H 0.047 0.953 32 H 0.124 0.876 33 H 0.149 0.851 34 H 0.095 0.905 35 H 0.110 0.890 36 H 0.057 0.943 37 H 0.245 0.755 38 H 0.204 0.796 39 H 0.285 0.715 40 H 0.242 0.758 41 H 0.122 0.878 42 H 0.109 0.891 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.864 -11.116 -20.340 23.254 hybrid contribution 1.370 -1.402 1.265 2.333 sum 3.234 -12.518 -19.075 23.044 Atomic orbital electron populations 1.22121 0.93848 1.03222 1.02272 1.21164 0.95015 0.96745 0.83860 0.92231 1.22258 0.92010 1.03621 0.97777 1.21259 0.93693 0.96427 0.85417 0.91568 1.22112 1.00847 1.02346 0.95922 1.46034 1.16819 1.37406 1.34573 1.17070 0.81948 0.81839 0.80949 1.90763 1.62519 1.30896 1.59286 1.23705 0.96930 0.99184 1.01487 1.23036 0.97796 1.04080 0.98472 1.26851 0.91038 0.92440 1.00428 1.84752 1.23446 1.48012 1.39418 1.74071 1.16799 1.12872 1.00515 1.46010 1.67458 1.13805 1.08834 1.20003 0.76736 0.86608 0.84706 1.90683 1.50699 1.17571 1.85064 1.23312 1.04307 1.03237 0.96782 1.85578 1.86530 1.17119 1.02709 1.23098 1.50970 0.98227 0.96833 0.90194 1.26124 0.94976 0.97153 1.00608 1.70183 1.46778 1.15546 1.22368 0.85031 0.79399 0.77697 0.76079 1.17965 1.20473 1.18764 0.89153 0.90451 0.95328 0.87627 0.85082 0.90548 0.89018 0.94276 0.75460 0.79570 0.71467 0.75771 0.87759 0.89106 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 9.49 71.98 0.68 -2.25 16 2 C 0.14 2.86 2.58 44.99 0.12 2.98 16 3 H 0.06 1.67 7.57 -2.39 -0.02 1.65 16 4 C -0.12 -1.36 4.43 30.59 0.14 -1.23 16 5 C 0.14 2.37 2.57 44.99 0.12 2.49 16 6 H 0.07 1.58 7.58 -2.38 -0.02 1.56 16 7 C -0.15 -2.05 9.48 71.98 0.68 -1.37 16 8 N -0.70 -14.96 3.80 -444.94 -1.69 -16.65 16 9 C 0.60 17.50 7.81 86.93 0.68 18.18 16 10 O -0.56 -19.76 16.61 -3.70 -0.06 -19.83 16 11 C -0.05 -1.53 7.19 42.96 0.31 -1.22 16 12 C -0.21 -5.05 10.99 22.60 0.25 -4.80 16 13 C -0.03 -0.51 12.28 67.15 0.82 0.31 16 14 O 0.12 2.83 11.18 71.85 0.80 3.64 16 15 N -0.34 -8.97 11.72 -49.51 -0.58 -9.55 16 16 N -0.71 -18.27 3.80 -442.53 -1.68 -19.95 16 17 C 0.53 20.81 7.82 87.66 0.69 21.49 16 18 O -0.56 -27.21 15.52 -3.04 -0.05 -27.26 16 19 C -0.13 -5.31 6.16 71.24 0.44 -4.87 16 20 S -0.15 -8.37 20.57 -56.49 -1.16 -9.53 16 21 C -0.54 -31.30 9.50 67.96 0.65 -30.66 16 22 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 23 C 0.02 0.92 5.49 84.86 0.47 1.38 16 24 N -0.91 -56.33 13.22 21.65 0.29 -56.04 16 25 Si 1.00 43.08 29.55 68.60 2.03 45.11 16 26 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 27 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 28 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 29 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.03 0.75 8.14 -2.39 -0.02 0.74 16 32 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.13 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 37 H 0.41 7.35 6.27 -92.71 -0.58 6.77 16 38 H 0.19 4.00 8.06 -2.91 -0.02 3.98 16 39 H 0.27 2.11 8.06 -2.91 -0.02 2.09 16 40 H 0.40 8.09 6.51 -92.71 -0.60 7.49 16 41 H 0.10 4.05 8.14 -2.40 -0.02 4.03 16 42 H 0.09 3.71 8.02 -2.39 -0.02 3.69 16 43 H 0.27 15.55 8.31 -92.72 -0.77 14.78 16 Total: -1.00 -87.06 384.54 3.79 -83.27 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: -0.13 Total: 26.36 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: 6.03 Total: 0.42 kcal Atomic # 7 Polarization: -98.53 SS G_CDS: -3.66 Total: -102.20 kcal Atomic # 8 Polarization: -44.14 SS G_CDS: 0.69 Total: -43.45 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.53 kcal Total: -87.06 3.79 -83.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001681538554.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.210 kcal (2) G-P(sol) polarization free energy of solvation -87.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds