Wall clock time and date at job start Sat Apr 11 2020 06:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.46852 * 2 1 4 4 C 1.46504 * 119.99999 * 90.00426 * 3 2 1 5 5 C 1.52996 * 109.46809 * 269.99562 * 4 3 2 6 6 C 1.53003 * 109.47249 * 179.97438 * 5 4 3 7 7 N 1.46491 * 109.47438 * 180.02562 * 6 5 4 8 8 C 1.34783 * 119.99898 * 179.97438 * 7 6 5 9 9 O 1.21683 * 120.00090 * 0.02562 * 8 7 6 10 10 C 1.46725 * 119.99562 * 179.97438 * 8 7 6 11 11 C 1.36344 * 126.63753 * 179.97438 * 10 8 7 12 12 N 1.33698 * 107.44973 * 179.74164 * 11 10 8 13 13 C 1.30615 * 108.99562 * 0.24745 * 12 11 10 14 14 O 1.33670 * 109.15519 * 359.97438 * 13 12 11 15 15 C 1.34777 * 120.00176 * 269.99783 * 3 2 1 16 16 O 1.21280 * 119.99929 * 180.02562 * 15 3 2 17 17 C 1.50706 * 119.99774 * 0.02562 * 15 3 2 18 18 S 1.81004 * 109.46733 * 179.97438 * 17 15 3 19 19 C 1.76196 * 99.99627 * 179.97438 * 18 17 15 20 20 H 1.08004 * 120.00254 * 0.02562 * 19 18 17 21 21 C 1.38800 * 120.00049 * 179.97438 * 19 18 17 22 22 N 1.31634 * 120.00369 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99823 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47078 * 89.99718 * 23 21 19 25 25 H 1.48503 * 109.47015 * 209.99796 * 23 21 19 26 26 H 1.48501 * 109.47184 * 330.00083 * 23 21 19 27 27 H 1.09005 * 109.46965 * 59.99635 * 1 2 3 28 28 H 1.08994 * 109.47008 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46977 * 300.00114 * 1 2 3 30 30 H 1.08996 * 109.46923 * 240.00537 * 2 1 3 31 31 H 1.08991 * 109.46997 * 120.00381 * 2 1 3 32 32 H 1.08993 * 109.47089 * 149.99826 * 4 3 2 33 33 H 1.09001 * 109.46883 * 29.99662 * 4 3 2 34 34 H 1.09008 * 109.47493 * 60.00222 * 5 4 3 35 35 H 1.08993 * 109.47630 * 300.00016 * 5 4 3 36 36 H 1.09000 * 109.46699 * 59.99539 * 6 5 4 37 37 H 1.09001 * 109.46804 * 300.00321 * 6 5 4 38 38 H 0.97000 * 120.00053 * 0.02562 * 7 6 5 39 39 H 1.08002 * 126.27901 * 0.02562 * 11 10 8 40 40 H 1.07996 * 125.42194 * 180.02562 * 13 12 11 41 41 H 1.08995 * 109.47039 * 299.99898 * 17 15 3 42 42 H 1.09001 * 109.46931 * 59.99847 * 17 15 3 43 43 H 0.96992 * 120.00256 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 1.2688 5 6 0.9876 2.7931 1.7104 6 6 1.2424 3.5138 3.0358 7 7 0.0214 4.2039 3.4590 8 6 0.0098 4.9097 4.6072 9 8 1.0136 4.9741 5.2920 10 6 -1.2130 5.6013 5.0307 11 6 -1.3757 6.3483 6.1597 12 7 -2.6333 6.8022 6.1622 13 6 -3.2453 6.3647 5.0944 14 8 -2.3983 5.6193 4.3777 15 6 2.2430 2.0166 -1.1672 16 8 2.6476 3.1599 -1.1671 17 6 1.9913 1.3063 -2.4723 18 16 2.3829 2.4156 -3.8480 19 6 2.0098 1.3595 -5.2082 20 1 1.6547 0.3551 -5.0305 21 6 2.1712 1.8186 -6.5080 22 7 1.8929 1.0295 -7.5242 23 14 2.7846 3.5561 -6.8154 24 1 4.2674 3.5502 -6.8975 25 1 2.2201 4.0617 -8.0925 26 1 2.3542 4.4375 -5.7005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.0644 2.7985 1.1384 33 1 2.5507 1.3451 2.0284 34 1 0.1856 2.0664 1.8408 35 1 0.6994 3.5197 0.9509 36 1 2.0444 4.2404 2.9058 37 1 1.5302 2.7868 3.7952 38 1 -0.7788 4.1522 2.9133 39 1 -0.6250 6.5420 6.9115 40 1 -4.2720 6.5729 4.8320 41 1 2.6212 0.4187 -2.5302 42 1 0.9432 1.0125 -2.5299 43 1 2.0061 1.3503 -8.4325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001687745273.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:52 Heat of formation + Delta-G solvation = -49.054715 kcal Electronic energy + Delta-G solvation = -26091.910937 eV Core-core repulsion = 22072.482277 eV Total energy + Delta-G solvation = -4019.428660 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.93777 -40.09321 -39.70829 -36.56984 -35.72538 -35.26592 -32.79549 -32.46934 -31.09121 -30.21383 -29.33362 -26.15333 -25.60893 -24.06734 -23.44748 -23.18727 -22.10024 -21.20761 -19.31103 -18.99369 -17.76319 -17.36241 -17.34119 -17.02324 -16.62610 -15.98916 -15.72657 -15.35740 -14.99608 -14.84243 -14.57270 -14.50617 -13.95385 -13.88485 -13.81566 -13.51735 -13.44768 -12.84233 -12.73620 -12.41072 -12.31913 -12.04782 -12.01535 -11.70118 -11.43038 -11.42667 -11.29025 -11.04194 -10.86772 -10.79508 -10.61382 -9.88710 -9.79996 -9.53874 -9.48053 -9.03425 -8.76082 -8.52608 -6.95641 -6.32000 -4.04048 0.30483 1.90545 1.92703 2.56073 2.61347 2.73907 2.88565 3.15365 3.30746 3.47679 3.55392 3.62246 4.26809 4.29925 4.40774 4.47675 4.57925 4.64626 4.79245 4.86541 4.96828 4.97406 5.03851 5.06463 5.08556 5.20951 5.23627 5.31471 5.44949 5.54853 5.63927 5.64263 5.75835 5.78538 5.81451 5.88786 5.95816 6.10948 6.52007 6.78951 7.04508 7.36657 7.52215 7.90945 8.37073 8.38246 9.14184 10.77127 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015502 B = 0.001982 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.777977 B =14124.645210 C =14848.714805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.105 3.895 3 N -0.619 5.619 4 C 0.123 3.877 5 C -0.151 4.151 6 C 0.121 3.879 7 N -0.715 5.715 8 C 0.608 3.392 9 O -0.514 6.514 10 C -0.111 4.111 11 C 0.054 3.946 12 N -0.495 5.495 13 C 0.203 3.797 14 O -0.191 6.191 15 C 0.532 3.468 16 O -0.516 6.516 17 C -0.122 4.122 18 S -0.144 6.144 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.236 1.236 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.407 0.593 39 H 0.198 0.802 40 H 0.258 0.742 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.043 2.264 25.906 27.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.018 4.018 3 N -0.354 5.354 4 C -0.001 4.001 5 C -0.190 4.190 6 C -0.002 4.002 7 N -0.366 5.366 8 C 0.393 3.607 9 O -0.391 6.391 10 C -0.166 4.166 11 C -0.089 4.089 12 N -0.223 5.223 13 C -0.022 4.022 14 O -0.077 6.077 15 C 0.320 3.680 16 O -0.390 6.390 17 C -0.272 4.272 18 S 0.082 5.918 19 C -0.668 4.668 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.160 1.160 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.242 0.758 39 H 0.215 0.785 40 H 0.273 0.727 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.997 4.296 26.553 28.062 hybrid contribution -0.631 -1.201 -1.210 1.818 sum -8.628 3.094 25.343 26.949 Atomic orbital electron populations 1.22303 0.95937 1.02407 1.02667 1.21601 0.94555 0.82213 1.03480 1.47962 1.67669 1.14334 1.05423 1.21226 0.96838 0.96962 0.85065 1.22285 0.99950 1.00528 0.96257 1.21409 0.86396 0.96367 0.96057 1.45901 1.16125 1.51316 1.23213 1.16323 0.84452 0.78456 0.81491 1.90921 1.31783 1.62100 1.54336 1.23212 0.86596 1.09454 0.97344 1.23654 0.93904 0.94438 0.96914 1.70486 1.06276 1.24094 1.21464 1.28494 0.97752 0.89539 0.86380 1.84513 1.19826 1.56459 1.46914 1.20334 0.76433 0.86509 0.84709 1.90698 1.43977 1.17471 1.86853 1.23342 1.05356 1.03316 0.95182 1.84800 1.88171 1.21220 0.97583 1.22296 1.51791 1.01884 0.90875 0.89406 1.24716 0.93769 0.97944 0.94888 1.69934 1.46569 1.36234 0.98885 0.86736 0.80291 0.85018 0.79810 1.19195 1.19947 1.15953 0.91884 0.91468 0.92406 0.89760 0.90419 0.89392 0.90369 0.90787 0.90287 0.90436 0.90717 0.75787 0.78512 0.72654 0.88576 0.88508 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 10.24 37.16 0.38 -1.07 16 2 C 0.10 0.94 5.98 -4.04 -0.02 0.92 16 3 N -0.62 -7.36 2.47 -173.69 -0.43 -7.79 16 4 C 0.12 1.18 5.45 -4.04 -0.02 1.16 16 5 C -0.15 -1.25 5.65 -26.73 -0.15 -1.40 16 6 C 0.12 0.97 5.67 -4.05 -0.02 0.95 16 7 N -0.71 -5.76 5.55 -61.61 -0.34 -6.10 16 8 C 0.61 6.02 7.79 -12.83 -0.10 5.92 16 9 O -0.51 -6.56 16.89 5.20 0.09 -6.47 16 10 C -0.11 -0.96 7.18 -36.84 -0.26 -1.23 16 11 C 0.05 0.46 11.66 -17.42 -0.20 0.25 16 12 N -0.50 -4.06 11.26 -14.67 -0.17 -4.22 16 13 C 0.20 1.08 13.21 52.25 0.69 1.77 16 14 O -0.19 -1.34 10.57 4.42 0.05 -1.29 16 15 C 0.53 9.01 7.69 -10.98 -0.08 8.93 16 16 O -0.52 -10.59 15.44 5.56 0.09 -10.50 16 17 C -0.12 -2.27 4.71 36.01 0.17 -2.10 16 18 S -0.14 -3.58 18.55 -107.50 -1.99 -5.57 16 19 C -0.52 -14.74 10.04 30.94 0.31 -14.43 16 20 H 0.09 2.58 8.03 -52.48 -0.42 2.16 16 21 C 0.10 2.76 5.50 -17.43 -0.10 2.66 16 22 N -0.88 -26.19 13.97 55.49 0.78 -25.42 16 23 Si 0.86 21.54 27.74 -169.99 -4.72 16.83 16 24 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.24 -5.91 6.74 56.52 0.38 -5.53 16 27 H 0.06 0.65 7.22 -51.93 -0.37 0.27 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.43 6.26 -51.93 -0.33 0.10 16 30 H 0.08 0.81 6.44 -51.93 -0.33 0.48 16 31 H 0.08 0.52 7.89 -51.93 -0.41 0.11 16 32 H 0.09 1.00 7.42 -51.93 -0.39 0.62 16 33 H 0.08 0.54 7.89 -51.93 -0.41 0.13 16 34 H 0.07 0.52 6.26 -51.92 -0.33 0.20 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.41 2.63 8.27 -40.82 -0.34 2.29 16 39 H 0.20 1.39 8.06 -52.49 -0.42 0.97 16 40 H 0.26 0.01 8.06 -52.49 -0.42 -0.41 16 41 H 0.10 1.68 7.40 -51.92 -0.38 1.30 16 42 H 0.10 1.69 7.18 -51.92 -0.37 1.32 16 43 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 381.43 15.07 5.75 5.75 Total: -1.00 -36.82 381.43 -6.09 -42.92 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -5.77 Total: -0.45 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: 0.58 Total: 2.33 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: -0.16 Total: -43.54 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: 0.22 Total: -18.26 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.72 Total: 16.83 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.57 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.82 -6.09 -42.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687745273.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.139 kcal (2) G-P(sol) polarization free energy of solvation -36.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds