Wall clock time and date at job start Sat Apr 11 2020 06:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.46852 * 2 1 4 4 C 1.46504 * 119.99999 * 90.00426 * 3 2 1 5 5 C 1.52996 * 109.46809 * 269.99562 * 4 3 2 6 6 C 1.53003 * 109.47249 * 179.97438 * 5 4 3 7 7 N 1.46491 * 109.47438 * 180.02562 * 6 5 4 8 8 C 1.34783 * 119.99898 * 179.97438 * 7 6 5 9 9 O 1.21683 * 120.00090 * 0.02562 * 8 7 6 10 10 C 1.46725 * 119.99562 * 179.97438 * 8 7 6 11 11 C 1.36344 * 126.63753 * 179.97438 * 10 8 7 12 12 N 1.33698 * 107.44973 * 179.74164 * 11 10 8 13 13 C 1.30615 * 108.99562 * 0.24745 * 12 11 10 14 14 O 1.33670 * 109.15519 * 359.97438 * 13 12 11 15 15 C 1.34777 * 120.00176 * 269.99783 * 3 2 1 16 16 O 1.21280 * 119.99929 * 180.02562 * 15 3 2 17 17 C 1.50706 * 119.99774 * 0.02562 * 15 3 2 18 18 S 1.81004 * 109.46733 * 179.97438 * 17 15 3 19 19 C 1.76196 * 99.99627 * 179.97438 * 18 17 15 20 20 H 1.08004 * 120.00254 * 0.02562 * 19 18 17 21 21 C 1.38800 * 120.00049 * 179.97438 * 19 18 17 22 22 N 1.31634 * 120.00369 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99823 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47078 * 89.99718 * 23 21 19 25 25 H 1.48503 * 109.47015 * 209.99796 * 23 21 19 26 26 H 1.48501 * 109.47184 * 330.00083 * 23 21 19 27 27 H 1.09005 * 109.46965 * 59.99635 * 1 2 3 28 28 H 1.08994 * 109.47008 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46977 * 300.00114 * 1 2 3 30 30 H 1.08996 * 109.46923 * 240.00537 * 2 1 3 31 31 H 1.08991 * 109.46997 * 120.00381 * 2 1 3 32 32 H 1.08993 * 109.47089 * 149.99826 * 4 3 2 33 33 H 1.09001 * 109.46883 * 29.99662 * 4 3 2 34 34 H 1.09008 * 109.47493 * 60.00222 * 5 4 3 35 35 H 1.08993 * 109.47630 * 300.00016 * 5 4 3 36 36 H 1.09000 * 109.46699 * 59.99539 * 6 5 4 37 37 H 1.09001 * 109.46804 * 300.00321 * 6 5 4 38 38 H 0.97000 * 120.00053 * 0.02562 * 7 6 5 39 39 H 1.08002 * 126.27901 * 0.02562 * 11 10 8 40 40 H 1.07996 * 125.42194 * 180.02562 * 13 12 11 41 41 H 1.08995 * 109.47039 * 299.99898 * 17 15 3 42 42 H 1.09001 * 109.46931 * 59.99847 * 17 15 3 43 43 H 0.96992 * 120.00256 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 1.2688 5 6 0.9876 2.7931 1.7104 6 6 1.2424 3.5138 3.0358 7 7 0.0214 4.2039 3.4590 8 6 0.0098 4.9097 4.6072 9 8 1.0136 4.9741 5.2920 10 6 -1.2130 5.6013 5.0307 11 6 -1.3757 6.3483 6.1597 12 7 -2.6333 6.8022 6.1622 13 6 -3.2453 6.3647 5.0944 14 8 -2.3983 5.6193 4.3777 15 6 2.2430 2.0166 -1.1672 16 8 2.6476 3.1599 -1.1671 17 6 1.9913 1.3063 -2.4723 18 16 2.3829 2.4156 -3.8480 19 6 2.0098 1.3595 -5.2082 20 1 1.6547 0.3551 -5.0305 21 6 2.1712 1.8186 -6.5080 22 7 1.8929 1.0295 -7.5242 23 14 2.7846 3.5561 -6.8154 24 1 4.2674 3.5502 -6.8975 25 1 2.2201 4.0617 -8.0925 26 1 2.3542 4.4375 -5.7005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.0644 2.7985 1.1384 33 1 2.5507 1.3451 2.0284 34 1 0.1856 2.0664 1.8408 35 1 0.6994 3.5197 0.9509 36 1 2.0444 4.2404 2.9058 37 1 1.5302 2.7868 3.7952 38 1 -0.7788 4.1522 2.9133 39 1 -0.6250 6.5420 6.9115 40 1 -4.2720 6.5729 4.8320 41 1 2.6212 0.4187 -2.5302 42 1 0.9432 1.0125 -2.5299 43 1 2.0061 1.3503 -8.4325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001687745273.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:52 Heat of formation + Delta-G solvation = -78.267729 kcal Electronic energy + Delta-G solvation = -26093.177708 eV Core-core repulsion = 22072.482277 eV Total energy + Delta-G solvation = -4020.695431 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.47345 -41.07634 -40.66309 -37.57049 -36.52850 -35.89685 -34.67531 -33.59154 -31.74105 -31.20026 -30.48819 -27.88637 -26.88022 -24.71783 -24.31859 -23.74068 -22.81306 -21.89289 -20.61107 -19.61528 -19.52849 -18.26777 -17.92714 -17.87246 -17.52022 -17.12970 -16.84028 -16.67641 -16.47487 -15.76187 -15.36494 -15.32733 -15.17370 -14.93190 -14.80346 -14.59330 -14.47144 -14.44668 -13.60149 -13.41470 -13.34378 -13.11061 -13.04687 -12.98940 -12.64468 -12.61357 -12.41172 -12.17604 -12.05214 -11.87280 -11.57923 -11.53121 -11.17585 -10.90883 -10.52396 -10.48993 -10.08840 -9.78157 -9.00445 -8.52004 -6.22771 -0.27790 0.97975 1.30632 1.33850 1.38416 1.45736 1.52795 1.54965 1.92248 1.98455 2.19177 2.24433 2.68421 2.86181 3.25165 3.55131 3.67237 3.83430 3.87424 3.93144 4.07984 4.15280 4.16560 4.39388 4.40581 4.41842 4.45551 4.54948 4.57748 4.64695 4.74267 4.84742 4.97314 5.06399 5.10755 5.17430 5.22677 5.41706 5.61252 5.70321 6.10834 6.15763 6.25722 6.49620 6.83623 6.93297 7.10899 8.60207 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015502 B = 0.001982 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.777977 B =14124.645210 C =14848.714805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.096 3.904 3 N -0.602 5.602 4 C 0.118 3.882 5 C -0.136 4.136 6 C 0.126 3.874 7 N -0.706 5.706 8 C 0.608 3.392 9 O -0.551 6.551 10 C -0.130 4.130 11 C 0.051 3.949 12 N -0.528 5.528 13 C 0.228 3.772 14 O -0.193 6.193 15 C 0.533 3.467 16 O -0.560 6.560 17 C -0.106 4.106 18 S -0.179 6.179 19 C -0.527 4.527 20 H 0.062 0.938 21 C 0.046 3.954 22 N -0.916 5.916 23 Si 0.913 3.087 24 H -0.263 1.263 25 H -0.259 1.259 26 H -0.237 1.237 27 H 0.037 0.963 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.115 0.885 32 H 0.067 0.933 33 H 0.118 0.882 34 H 0.094 0.906 35 H 0.053 0.947 36 H 0.062 0.938 37 H 0.088 0.912 38 H 0.416 0.584 39 H 0.201 0.799 40 H 0.307 0.693 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.276 1.878 27.642 29.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.026 4.026 3 N -0.335 5.335 4 C -0.005 4.005 5 C -0.175 4.175 6 C 0.002 3.998 7 N -0.357 5.357 8 C 0.394 3.606 9 O -0.431 6.431 10 C -0.185 4.185 11 C -0.092 4.092 12 N -0.256 5.256 13 C 0.004 3.996 14 O -0.079 6.079 15 C 0.320 3.680 16 O -0.438 6.438 17 C -0.257 4.257 18 S 0.047 5.953 19 C -0.674 4.674 20 H 0.081 0.919 21 C -0.160 4.160 22 N -0.554 5.554 23 Si 0.735 3.265 24 H -0.188 1.188 25 H -0.184 1.184 26 H -0.161 1.161 27 H 0.057 0.943 28 H 0.103 0.897 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.133 0.867 32 H 0.085 0.915 33 H 0.136 0.864 34 H 0.113 0.887 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.106 0.894 38 H 0.252 0.748 39 H 0.218 0.782 40 H 0.321 0.679 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.262 3.862 28.307 30.033 hybrid contribution -0.372 -1.192 -1.610 2.038 sum -9.634 2.670 26.697 28.507 Atomic orbital electron populations 1.22273 0.95112 1.03463 1.02125 1.21927 0.95202 0.80364 1.05065 1.47950 1.65722 1.15266 1.04581 1.21466 0.96884 0.97634 0.84521 1.22109 0.99810 1.00182 0.95411 1.21344 0.85993 0.96224 0.96203 1.45842 1.16456 1.50653 1.22721 1.16448 0.84453 0.78275 0.81445 1.90893 1.33167 1.63556 1.55493 1.22922 0.87033 1.10629 0.97936 1.23834 0.94379 0.94038 0.96946 1.70518 1.06355 1.25586 1.23182 1.29650 0.98644 0.86661 0.84687 1.84519 1.19453 1.56910 1.46990 1.20002 0.76631 0.85920 0.85441 1.90684 1.46507 1.19194 1.87456 1.23316 1.06314 1.02254 0.93803 1.84722 1.88478 1.22995 0.99069 1.22435 1.51161 1.01390 0.92449 0.91928 1.25551 0.94027 1.01577 0.94818 1.70010 1.47771 1.38064 0.99508 0.85881 0.79896 0.80624 0.80052 1.18784 1.18358 1.16131 0.94334 0.89661 0.91013 0.90425 0.86697 0.91466 0.86440 0.88719 0.92812 0.91967 0.89383 0.74775 0.78183 0.67879 0.87277 0.87281 0.91383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 10.24 71.98 0.74 -1.58 16 2 C 0.10 1.41 5.98 86.38 0.52 1.93 16 3 N -0.60 -13.03 2.47 -821.82 -2.03 -15.07 16 4 C 0.12 1.98 5.45 86.38 0.47 2.45 16 5 C -0.14 -1.99 5.65 30.59 0.17 -1.82 16 6 C 0.13 1.84 5.67 86.38 0.49 2.33 16 7 N -0.71 -10.62 5.55 -467.05 -2.59 -13.21 16 8 C 0.61 11.82 7.79 86.46 0.67 12.49 16 9 O -0.55 -14.18 16.89 -4.29 -0.07 -14.25 16 10 C -0.13 -2.17 7.18 24.05 0.17 -2.00 16 11 C 0.05 0.84 11.66 83.97 0.98 1.82 16 12 N -0.53 -7.92 11.26 -315.09 -3.55 -11.47 16 13 C 0.23 1.83 13.21 130.42 1.72 3.55 16 14 O -0.19 -2.34 10.57 -7.11 -0.08 -2.41 16 15 C 0.53 17.66 7.69 87.66 0.67 18.33 16 16 O -0.56 -23.14 15.44 -3.03 -0.05 -23.19 16 17 C -0.11 -3.92 4.71 71.24 0.34 -3.59 16 18 S -0.18 -8.97 18.55 -56.49 -1.05 -10.02 16 19 C -0.53 -30.32 10.04 67.95 0.68 -29.64 16 20 H 0.06 3.79 8.03 -2.91 -0.02 3.77 16 21 C 0.05 2.66 5.50 84.86 0.47 3.13 16 22 N -0.92 -55.21 13.97 21.65 0.30 -54.91 16 23 Si 0.91 44.75 27.74 68.60 1.90 46.65 16 24 H -0.26 -12.61 7.11 99.48 0.71 -11.91 16 25 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 26 H -0.24 -11.62 6.74 99.48 0.67 -10.95 16 27 H 0.04 0.72 7.22 -2.38 -0.02 0.70 16 28 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 0.77 6.26 -2.39 -0.01 0.76 16 30 H 0.08 1.29 6.44 -2.39 -0.02 1.27 16 31 H 0.11 0.94 7.89 -2.39 -0.02 0.92 16 32 H 0.07 1.47 7.42 -2.39 -0.02 1.46 16 33 H 0.12 1.12 7.89 -2.39 -0.02 1.10 16 34 H 0.09 1.01 6.26 -2.38 -0.01 0.99 16 35 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.42 4.76 8.27 -92.71 -0.77 3.99 16 39 H 0.20 2.91 8.06 -2.91 -0.02 2.89 16 40 H 0.31 -1.25 8.06 -2.91 -0.02 -1.28 16 41 H 0.11 3.74 7.40 -2.40 -0.02 3.72 16 42 H 0.11 3.76 7.18 -2.39 -0.02 3.74 16 43 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -82.81 381.43 1.13 -81.68 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: 0.25 Total: 8.78 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 8.09 Total: 7.42 kcal Atomic # 7 Polarization: -86.79 SS G_CDS: -7.87 Total: -94.65 kcal Atomic # 8 Polarization: -39.66 SS G_CDS: -0.19 Total: -39.86 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.90 Total: 46.65 kcal Atomic # 16 Polarization: -8.97 SS G_CDS: -1.05 Total: -10.02 kcal Total: -82.81 1.13 -81.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687745273.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.409 kcal (2) G-P(sol) polarization free energy of solvation -82.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds