Wall clock time and date at job start Sat Apr 11 2020 06:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 C 1.52997 * 109.47236 * 180.02562 * 5 4 2 7 7 N 1.46502 * 109.47004 * 180.02562 * 6 5 4 8 8 C 1.34771 * 119.99986 * 180.02562 * 7 6 5 9 9 O 1.21282 * 120.00389 * 359.97438 * 8 7 6 10 10 C 1.50696 * 120.00305 * 179.97438 * 8 7 6 11 11 S 1.81002 * 109.47416 * 179.97438 * 10 8 7 12 12 C 1.76198 * 99.99953 * 179.97438 * 11 10 8 13 13 H 1.08000 * 120.00394 * 0.02562 * 12 11 10 14 14 C 1.38806 * 120.00256 * 179.97438 * 12 11 10 15 15 N 1.31634 * 119.99283 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00368 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46768 * 60.00228 * 16 14 12 18 18 H 1.48493 * 109.47040 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47163 * 300.00598 * 16 14 12 20 20 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 21 21 C 1.34769 * 119.99686 * 84.99974 * 20 2 1 22 22 O 1.21491 * 120.00607 * 0.02562 * 21 20 2 23 23 C 1.48331 * 119.99593 * 180.02562 * 21 20 2 24 24 C 1.42271 * 126.93970 * 179.71139 * 23 21 20 25 25 C 1.35314 * 103.92706 * 179.91151 * 24 23 21 26 26 O 1.34021 * 106.66470 * 0.34452 * 25 24 23 27 27 N 1.20900 * 111.84524 * 359.76505 * 26 25 24 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 30 30 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 32 32 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 33 33 H 1.09001 * 109.46917 * 300.00567 * 5 4 2 34 34 H 1.09004 * 109.46741 * 59.99889 * 5 4 2 35 35 H 1.08993 * 109.47322 * 300.00158 * 6 5 4 36 36 H 1.09004 * 109.46881 * 60.00519 * 6 5 4 37 37 H 0.97000 * 119.99888 * 359.97438 * 7 6 5 38 38 H 1.09006 * 109.47268 * 300.00136 * 10 8 7 39 39 H 1.09003 * 109.47235 * 59.99573 * 10 8 7 40 40 H 0.97003 * 119.98943 * 179.97438 * 15 14 12 41 41 H 0.97000 * 119.99634 * 265.00306 * 20 2 1 42 42 H 1.08008 * 128.03831 * 0.03299 * 24 23 21 43 43 H 1.08000 * 126.66714 * 180.09433 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 6 4.0748 -1.3351 2.5627 7 7 5.5348 -1.2312 2.6248 8 6 6.2078 -1.7971 3.6461 9 8 5.6048 -2.3920 4.5141 10 6 7.7096 -1.6908 3.7098 11 16 8.3130 -2.5445 5.1874 12 6 10.0448 -2.2702 5.0135 13 1 10.4211 -1.7122 4.1689 14 6 10.9255 -2.7704 5.9626 15 7 10.4668 -3.4502 6.9924 16 14 12.7614 -2.4790 5.7787 17 1 13.0325 -1.0190 5.7720 18 1 13.4791 -3.1111 6.9147 19 1 13.2319 -3.0757 4.5029 20 7 2.0184 -0.6906 -1.1962 21 6 2.1472 -0.0183 -2.3570 22 8 1.8586 1.1606 -2.4116 23 6 2.6411 -0.7177 -3.5683 24 6 2.8273 -0.1577 -4.8628 25 6 3.2898 -1.1925 -5.6019 26 8 3.3497 -2.2525 -4.7839 27 7 2.9887 -1.9770 -3.6634 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6053 -0.2617 2.1370 32 1 1.7516 -1.7715 1.2056 33 1 3.9994 -1.0728 0.4261 34 1 3.8531 0.4370 1.3574 35 1 3.6402 -0.8760 3.4506 36 1 3.7864 -2.3853 2.5186 37 1 6.0171 -0.7557 1.9304 38 1 8.1444 -2.1496 2.8216 39 1 7.9980 -0.6405 3.7542 40 1 11.0823 -3.8000 7.6554 41 1 2.2491 -1.6318 -1.1525 42 1 2.6441 0.8580 -5.1812 43 1 3.5549 -1.1697 -6.6486 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701443976.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:32 Heat of formation + Delta-G solvation = -25.258118 kcal Electronic energy + Delta-G solvation = -25568.142336 eV Core-core repulsion = 21549.745574 eV Total energy + Delta-G solvation = -4018.396762 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.61425 -40.31566 -39.17072 -37.22281 -35.04698 -34.54791 -32.89072 -32.42397 -32.14736 -30.84038 -29.11926 -26.16462 -25.52462 -25.26600 -23.53718 -22.23693 -21.60577 -20.97073 -20.27425 -19.03412 -18.26644 -17.82103 -17.43096 -16.82554 -16.24952 -15.91804 -15.67183 -15.37568 -15.08162 -14.79995 -14.62538 -14.25872 -14.15499 -13.91189 -13.80216 -13.55392 -13.06878 -12.83281 -12.68991 -12.57076 -12.24537 -11.93673 -11.82708 -11.76292 -11.27024 -11.11230 -11.04075 -11.03284 -10.99992 -10.76341 -10.73082 -10.33027 -9.82273 -9.66187 -9.39179 -9.05978 -8.88477 -8.23735 -6.49668 -6.21125 -3.91746 0.60298 1.16395 2.37068 2.63551 2.66865 3.03631 3.10525 3.23836 3.27771 3.31489 3.42073 3.70171 4.06326 4.20973 4.23551 4.47998 4.51911 4.57280 4.70256 4.84322 4.90003 4.95882 5.08039 5.13825 5.19750 5.24991 5.30205 5.31830 5.33846 5.49813 5.59065 5.68061 5.78044 5.80319 5.90375 5.96786 5.99293 6.14355 6.61896 6.86037 7.42770 7.59674 7.60142 7.70820 8.35476 8.61723 9.23960 10.86247 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013618 B = 0.001771 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.610865 B =15805.675426 C =17300.888380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.141 3.859 3 H 0.094 0.906 4 C -0.125 4.125 5 C -0.132 4.132 6 C 0.121 3.879 7 N -0.740 5.740 8 C 0.531 3.469 9 O -0.518 6.518 10 C -0.154 4.154 11 S -0.060 6.060 12 C -0.536 4.536 13 H 0.072 0.928 14 C 0.073 3.927 15 N -0.868 5.868 16 Si 0.919 3.081 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.274 1.274 20 N -0.708 5.708 21 C 0.601 3.399 22 O -0.521 6.521 23 C -0.032 4.032 24 C -0.186 4.186 25 C -0.056 4.056 26 O 0.124 5.876 27 N -0.330 5.330 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.398 0.602 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.269 0.731 41 H 0.407 0.593 42 H 0.182 0.818 43 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.768 7.192 -25.955 33.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.038 3.962 3 H 0.112 0.888 4 C -0.163 4.163 5 C -0.170 4.170 6 C -0.003 4.003 7 N -0.395 5.395 8 C 0.317 3.683 9 O -0.393 6.393 10 C -0.304 4.304 11 S 0.166 5.834 12 C -0.684 4.684 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.199 1.199 20 N -0.360 5.360 21 C 0.385 3.615 22 O -0.396 6.396 23 C -0.191 4.191 24 C -0.208 4.208 25 C -0.136 4.136 26 O 0.048 5.952 27 N -0.030 5.030 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.231 0.769 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.243 0.757 42 H 0.199 0.801 43 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -20.954 5.976 -23.389 31.966 hybrid contribution 2.168 1.428 -2.010 3.284 sum -18.786 7.404 -25.399 32.447 Atomic orbital electron populations 1.22188 0.94658 1.02517 1.02937 1.21123 0.94349 0.97696 0.83064 0.88789 1.21843 0.95390 1.01782 0.97329 1.21817 0.95545 1.01568 0.98088 1.21262 0.80649 1.00725 0.97660 1.46008 1.07138 1.58676 1.27660 1.20310 0.89515 0.77722 0.80744 1.90700 1.69922 1.40776 1.37860 1.23535 0.93611 1.05829 1.07466 1.85386 1.04567 1.69626 1.23779 1.22829 0.91542 1.41180 1.12882 0.90990 1.25000 0.99609 0.94540 0.94473 1.70015 1.35507 1.33653 1.11105 0.86216 0.82744 0.78611 0.77882 1.19939 1.20805 1.19946 1.46002 1.66283 1.14544 1.09203 1.16860 0.77581 0.85738 0.81366 1.90815 1.49832 1.14647 1.84267 1.23626 1.06775 0.91225 0.97460 1.22802 1.04356 1.02603 0.91081 1.26112 1.02670 0.85476 0.99391 1.84817 1.60873 1.35472 1.14054 1.74198 1.12654 1.16096 1.00087 0.91005 0.92012 0.92182 0.89313 0.90640 0.91317 0.90981 0.91561 0.91658 0.76888 0.89258 0.89244 0.92133 0.75711 0.80096 0.75761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.03 9.48 37.16 0.35 -0.68 16 2 C 0.14 0.96 2.57 -67.93 -0.17 0.78 16 3 H 0.09 0.76 7.58 -51.93 -0.39 0.36 16 4 C -0.13 -0.75 4.75 -26.73 -0.13 -0.88 16 5 C -0.13 -1.00 5.22 -26.73 -0.14 -1.14 16 6 C 0.12 1.34 5.67 -4.04 -0.02 1.32 16 7 N -0.74 -9.91 5.56 -60.30 -0.33 -10.25 16 8 C 0.53 10.04 7.85 -10.99 -0.09 9.96 16 9 O -0.52 -11.92 15.86 5.56 0.09 -11.84 16 10 C -0.15 -3.14 6.16 36.00 0.22 -2.92 16 11 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 12 C -0.54 -15.39 9.50 30.94 0.29 -15.10 16 13 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 14 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 15 N -0.87 -26.30 13.22 55.49 0.73 -25.57 16 16 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 16 17 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 20 N -0.71 -5.31 4.53 -54.59 -0.25 -5.55 16 21 C 0.60 5.75 7.81 -12.11 -0.09 5.66 16 22 O -0.52 -6.36 16.61 5.37 0.09 -6.27 16 23 C -0.03 -0.27 7.19 -82.53 -0.59 -0.86 16 24 C -0.19 -1.10 10.99 -39.08 -0.43 -1.53 16 25 C -0.06 -0.20 12.28 29.69 0.36 0.16 16 26 O 0.12 0.80 11.18 17.23 0.19 1.00 16 27 N -0.33 -2.76 11.84 33.30 0.39 -2.37 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.52 7.75 -51.93 -0.40 0.12 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.40 4.22 8.47 -40.82 -0.35 3.87 16 38 H 0.09 1.69 8.14 -51.91 -0.42 1.26 16 39 H 0.09 1.69 8.14 -51.91 -0.42 1.26 16 40 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.41 2.69 8.36 -40.82 -0.34 2.35 16 42 H 0.18 0.82 8.06 -52.48 -0.42 0.39 16 43 H 0.23 -0.25 8.06 -52.49 -0.42 -0.67 16 LS Contribution 391.03 15.07 5.89 5.89 Total: -1.00 -37.75 391.03 -7.06 -44.81 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -6.10 Total: 0.74 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -0.53 Total: -3.22 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: 0.55 Total: -43.74 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: 0.37 Total: -17.11 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.75 -7.06 -44.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701443976.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.549 kcal (2) G-P(sol) polarization free energy of solvation -37.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds