Wall clock time and date at job start Sat Apr 11 2020 06:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 C 1.52997 * 109.47236 * 180.02562 * 5 4 2 7 7 N 1.46502 * 109.47004 * 180.02562 * 6 5 4 8 8 C 1.34771 * 119.99986 * 180.02562 * 7 6 5 9 9 O 1.21282 * 120.00389 * 359.97438 * 8 7 6 10 10 C 1.50696 * 120.00305 * 179.97438 * 8 7 6 11 11 S 1.81002 * 109.47416 * 179.97438 * 10 8 7 12 12 C 1.76198 * 99.99953 * 179.97438 * 11 10 8 13 13 H 1.08000 * 120.00394 * 0.02562 * 12 11 10 14 14 C 1.38806 * 120.00256 * 179.97438 * 12 11 10 15 15 N 1.31634 * 119.99283 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00368 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46768 * 60.00228 * 16 14 12 18 18 H 1.48493 * 109.47040 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47163 * 300.00598 * 16 14 12 20 20 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 21 21 C 1.34769 * 119.99686 * 84.99974 * 20 2 1 22 22 O 1.21491 * 120.00607 * 0.02562 * 21 20 2 23 23 C 1.48331 * 119.99593 * 180.02562 * 21 20 2 24 24 C 1.42271 * 126.93970 * 179.71139 * 23 21 20 25 25 C 1.35314 * 103.92706 * 179.91151 * 24 23 21 26 26 O 1.34021 * 106.66470 * 0.34452 * 25 24 23 27 27 N 1.20900 * 111.84524 * 359.76505 * 26 25 24 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 30 30 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 32 32 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 33 33 H 1.09001 * 109.46917 * 300.00567 * 5 4 2 34 34 H 1.09004 * 109.46741 * 59.99889 * 5 4 2 35 35 H 1.08993 * 109.47322 * 300.00158 * 6 5 4 36 36 H 1.09004 * 109.46881 * 60.00519 * 6 5 4 37 37 H 0.97000 * 119.99888 * 359.97438 * 7 6 5 38 38 H 1.09006 * 109.47268 * 300.00136 * 10 8 7 39 39 H 1.09003 * 109.47235 * 59.99573 * 10 8 7 40 40 H 0.97003 * 119.98943 * 179.97438 * 15 14 12 41 41 H 0.97000 * 119.99634 * 265.00306 * 20 2 1 42 42 H 1.08008 * 128.03831 * 0.03299 * 24 23 21 43 43 H 1.08000 * 126.66714 * 180.09433 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 6 4.0748 -1.3351 2.5627 7 7 5.5348 -1.2312 2.6248 8 6 6.2078 -1.7971 3.6461 9 8 5.6048 -2.3920 4.5141 10 6 7.7096 -1.6908 3.7098 11 16 8.3130 -2.5445 5.1874 12 6 10.0448 -2.2702 5.0135 13 1 10.4211 -1.7122 4.1689 14 6 10.9255 -2.7704 5.9626 15 7 10.4668 -3.4502 6.9924 16 14 12.7614 -2.4790 5.7787 17 1 13.0325 -1.0190 5.7720 18 1 13.4791 -3.1111 6.9147 19 1 13.2319 -3.0757 4.5029 20 7 2.0184 -0.6906 -1.1962 21 6 2.1472 -0.0183 -2.3570 22 8 1.8586 1.1606 -2.4116 23 6 2.6411 -0.7177 -3.5683 24 6 2.8273 -0.1577 -4.8628 25 6 3.2898 -1.1925 -5.6019 26 8 3.3497 -2.2525 -4.7839 27 7 2.9887 -1.9770 -3.6634 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6053 -0.2617 2.1370 32 1 1.7516 -1.7715 1.2056 33 1 3.9994 -1.0728 0.4261 34 1 3.8531 0.4370 1.3574 35 1 3.6402 -0.8760 3.4506 36 1 3.7864 -2.3853 2.5186 37 1 6.0171 -0.7557 1.9304 38 1 8.1444 -2.1496 2.8216 39 1 7.9980 -0.6405 3.7542 40 1 11.0823 -3.8000 7.6554 41 1 2.2491 -1.6318 -1.1525 42 1 2.6441 0.8580 -5.1812 43 1 3.5549 -1.1697 -6.6486 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701443976.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:32 Heat of formation + Delta-G solvation = -53.632404 kcal Electronic energy + Delta-G solvation = -25569.372737 eV Core-core repulsion = 21549.745574 eV Total energy + Delta-G solvation = -4019.627163 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -46.11054 -41.01557 -40.59166 -37.96332 -36.13481 -35.08417 -34.59159 -33.64686 -32.77094 -31.70410 -30.41530 -27.72450 -26.86629 -26.00957 -23.99313 -22.99175 -22.28824 -21.64369 -21.53469 -19.82558 -19.51000 -18.78252 -18.02466 -17.77871 -17.52695 -17.09613 -16.88335 -16.78488 -16.10564 -15.86276 -15.76177 -15.51884 -14.87481 -14.77758 -14.73131 -14.40354 -14.24999 -14.04371 -13.86169 -13.28772 -13.17912 -13.15739 -12.86846 -12.74684 -12.66620 -12.58588 -12.40153 -11.97342 -11.78030 -11.71747 -11.54338 -11.44970 -11.13587 -10.97680 -10.73103 -10.30287 -10.28844 -10.12654 -8.67970 -8.35221 -6.13675 0.06149 0.77604 1.26150 1.43561 1.46239 1.56214 1.59414 1.80539 2.01462 2.25607 2.29501 2.30850 2.88651 2.98654 3.30938 3.53466 3.69116 3.87247 3.95431 4.01155 4.03757 4.19411 4.27178 4.28984 4.36359 4.45834 4.49062 4.63335 4.64794 4.67784 4.76142 4.85801 4.97105 4.98171 5.10250 5.21257 5.28014 5.39562 5.40727 5.44606 6.18873 6.23468 6.48148 6.87506 7.05127 7.05731 7.22363 8.73746 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013618 B = 0.001771 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.610865 B =15805.675426 C =17300.888380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.143 3.857 3 H 0.082 0.918 4 C -0.118 4.118 5 C -0.120 4.120 6 C 0.120 3.880 7 N -0.715 5.715 8 C 0.532 3.468 9 O -0.566 6.566 10 C -0.131 4.131 11 S -0.151 6.151 12 C -0.548 4.548 13 H 0.082 0.918 14 C 0.012 3.988 15 N -0.911 5.911 16 Si 0.999 3.001 17 H -0.262 1.262 18 H -0.278 1.278 19 H -0.262 1.262 20 N -0.700 5.700 21 C 0.597 3.403 22 O -0.556 6.556 23 C -0.056 4.056 24 C -0.207 4.207 25 C -0.026 4.026 26 O 0.122 5.878 27 N -0.351 5.351 28 H 0.084 0.916 29 H 0.043 0.957 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.415 0.585 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.271 0.729 41 H 0.412 0.588 42 H 0.190 0.810 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.107 7.931 -28.507 35.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.100 0.900 4 C -0.156 4.156 5 C -0.157 4.157 6 C -0.004 4.004 7 N -0.369 5.369 8 C 0.318 3.682 9 O -0.445 6.445 10 C -0.282 4.282 11 S 0.076 5.924 12 C -0.696 4.696 13 H 0.101 0.899 14 C -0.192 4.192 15 N -0.547 5.547 16 Si 0.821 3.179 17 H -0.187 1.187 18 H -0.203 1.203 19 H -0.186 1.186 20 N -0.351 5.351 21 C 0.382 3.618 22 O -0.433 6.433 23 C -0.214 4.214 24 C -0.230 4.230 25 C -0.106 4.106 26 O 0.045 5.955 27 N -0.051 5.051 28 H 0.103 0.897 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.118 0.882 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.251 0.749 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.080 0.920 41 H 0.249 0.751 42 H 0.208 0.792 43 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -20.313 6.725 -25.979 33.656 hybrid contribution 1.859 1.220 -1.354 2.604 sum -18.453 7.945 -27.333 33.923 Atomic orbital electron populations 1.22146 0.94074 1.02905 1.02731 1.21130 0.94762 0.97124 0.83028 0.89972 1.21796 0.94133 1.02382 0.97274 1.21721 0.96505 1.01313 0.96206 1.21432 0.78781 1.00940 0.99211 1.45799 1.08257 1.56710 1.26139 1.20064 0.88901 0.77850 0.81399 1.90688 1.70462 1.43300 1.40024 1.23383 0.94849 1.05882 1.04076 1.85560 1.05879 1.71763 1.29203 1.23172 0.91653 1.41345 1.13392 0.89942 1.26153 1.05303 0.93927 0.93865 1.70183 1.37490 1.34856 1.12166 0.84991 0.75602 0.79046 0.78278 1.18661 1.20347 1.18645 1.46020 1.65456 1.14690 1.08969 1.17094 0.77163 0.85454 0.82101 1.90784 1.51609 1.16037 1.84910 1.23716 1.07888 0.91785 0.98053 1.23076 1.05594 1.03820 0.90525 1.26961 0.99692 0.83510 1.00454 1.84778 1.60378 1.36413 1.13927 1.74198 1.13637 1.16092 1.01184 0.89676 0.93748 0.91468 0.88197 0.89760 0.90985 0.90438 0.92066 0.92207 0.74875 0.87296 0.87280 0.91969 0.75108 0.79244 0.70946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.48 71.98 0.68 -1.18 16 2 C 0.14 1.81 2.57 44.99 0.12 1.92 16 3 H 0.08 1.28 7.58 -2.39 -0.02 1.26 16 4 C -0.12 -1.20 4.75 30.59 0.15 -1.05 16 5 C -0.12 -1.57 5.22 30.59 0.16 -1.41 16 6 C 0.12 2.47 5.67 86.38 0.49 2.96 16 7 N -0.72 -17.88 5.56 -463.07 -2.57 -20.46 16 8 C 0.53 19.77 7.85 87.66 0.69 20.46 16 9 O -0.57 -26.44 15.86 -3.04 -0.05 -26.49 16 10 C -0.13 -5.23 6.16 71.23 0.44 -4.79 16 11 S -0.15 -8.48 20.57 -56.49 -1.16 -9.64 16 12 C -0.55 -31.50 9.50 67.96 0.65 -30.85 16 13 H 0.08 4.39 7.80 -2.91 -0.02 4.36 16 14 C 0.01 0.70 5.49 84.86 0.47 1.17 16 15 N -0.91 -56.22 13.22 21.65 0.29 -55.93 16 16 Si 1.00 43.72 29.55 68.60 2.03 45.75 16 17 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 18 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 20 N -0.70 -10.11 4.53 -444.95 -2.01 -12.13 16 21 C 0.60 11.49 7.81 86.93 0.68 12.17 16 22 O -0.56 -13.89 16.61 -3.69 -0.06 -13.95 16 23 C -0.06 -0.94 7.19 42.96 0.31 -0.63 16 24 C -0.21 -2.21 10.99 22.60 0.25 -1.96 16 25 C -0.03 -0.12 12.28 67.14 0.82 0.70 16 26 O 0.12 1.37 11.18 71.84 0.80 2.17 16 27 N -0.35 -5.60 11.84 -49.51 -0.59 -6.19 16 28 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.07 0.94 7.75 -2.39 -0.02 0.92 16 34 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 37 H 0.41 7.68 8.47 -92.71 -0.79 6.89 16 38 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 39 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 40 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 41 H 0.41 5.12 8.36 -92.71 -0.78 4.34 16 42 H 0.19 1.54 8.06 -2.91 -0.02 1.52 16 43 H 0.28 -1.84 8.06 -2.91 -0.02 -1.87 16 Total: -1.00 -85.53 391.03 2.05 -83.47 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -0.51 Total: 15.88 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: 5.89 Total: -2.49 kcal Atomic # 7 Polarization: -89.82 SS G_CDS: -4.89 Total: -94.71 kcal Atomic # 8 Polarization: -38.96 SS G_CDS: 0.69 Total: -38.27 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: -8.48 SS G_CDS: -1.16 Total: -9.64 kcal Total: -85.53 2.05 -83.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701443976.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.839 kcal (2) G-P(sol) polarization free energy of solvation -85.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds