Wall clock time and date at job start Sat Apr 11 2020 06:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46493 * 109.47565 * 2 1 4 4 C 1.46509 * 119.99983 * 92.79557 * 3 2 1 5 5 C 1.52994 * 109.47141 * 90.00349 * 4 3 2 6 6 C 1.52996 * 109.47201 * 180.02562 * 5 4 3 7 7 N 1.46503 * 109.47392 * 179.97438 * 6 5 4 8 8 C 1.34775 * 120.00063 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99947 * 0.02562 * 8 7 6 10 10 C 1.50701 * 119.99829 * 179.97438 * 8 7 6 11 11 S 1.81007 * 109.46837 * 180.02562 * 10 8 7 12 12 C 1.76202 * 99.99612 * 180.02562 * 11 10 8 13 13 H 1.07997 * 120.00391 * 359.97438 * 12 11 10 14 14 C 1.38799 * 119.99951 * 180.02562 * 12 11 10 15 15 N 1.31635 * 119.99750 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00383 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46824 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47373 * 119.99439 * 16 14 12 19 19 H 1.48495 * 109.47225 * 240.00002 * 16 14 12 20 20 C 1.34774 * 120.00389 * 272.79909 * 3 2 1 21 21 O 1.21500 * 120.00091 * 185.24397 * 20 3 2 22 22 C 1.48330 * 119.99995 * 5.24338 * 20 3 2 23 23 C 1.42275 * 126.94002 * 185.62558 * 22 20 3 24 24 C 1.35321 * 103.91832 * 179.88684 * 23 22 20 25 25 O 1.34018 * 106.66912 * 0.36912 * 24 23 22 26 26 N 1.20902 * 111.84778 * 359.75091 * 25 24 23 27 27 H 1.09005 * 109.47034 * 59.99466 * 1 2 3 28 28 H 1.08995 * 109.47375 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47031 * 300.00145 * 1 2 3 30 30 H 1.09002 * 109.47031 * 239.99855 * 2 1 3 31 31 H 1.09005 * 109.47034 * 120.00534 * 2 1 3 32 32 H 1.09000 * 109.46939 * 210.00698 * 4 3 2 33 33 H 1.09001 * 109.46587 * 330.00186 * 4 3 2 34 34 H 1.09004 * 109.46804 * 299.99787 * 5 4 3 35 35 H 1.08995 * 109.47505 * 59.99940 * 5 4 3 36 36 H 1.09007 * 109.47206 * 300.00004 * 6 5 4 37 37 H 1.09002 * 109.47631 * 59.99573 * 6 5 4 38 38 H 0.96994 * 119.99440 * 0.02562 * 7 6 5 39 39 H 1.08995 * 109.47369 * 299.99977 * 10 8 7 40 40 H 1.08995 * 109.46850 * 60.00802 * 10 8 7 41 41 H 0.96998 * 119.99840 * 180.02562 * 15 14 12 42 42 H 1.07991 * 128.04067 * 0.02562 * 23 22 20 43 43 H 1.07995 * 126.66171 * 180.08172 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3210 2.0511 1.2673 5 6 3.7846 1.8041 1.6380 6 6 4.1004 2.5032 2.9618 7 7 5.5018 2.2661 3.3171 8 6 6.0073 2.7900 4.4513 9 8 5.3019 3.4573 5.1781 10 6 7.4487 2.5456 4.8171 11 16 7.8222 3.3729 6.3831 12 6 9.5193 2.9346 6.5634 13 1 10.0021 2.3248 5.8141 14 6 10.2354 3.3720 7.6690 15 7 9.6468 4.1148 8.5825 16 14 12.0344 2.9068 7.8605 17 1 12.4553 2.0720 6.7067 18 1 12.8619 4.1388 7.9087 19 1 12.2159 2.1390 9.1186 20 6 2.1893 2.0355 -1.1657 21 8 2.6836 3.1454 -1.1726 22 6 1.7741 1.4007 -2.4404 23 6 1.9847 1.9037 -3.7545 24 6 1.4289 0.9651 -4.5553 25 8 0.9372 0.0142 -3.7490 26 7 1.1343 0.2666 -2.5832 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.1485 3.1222 1.1622 33 1 1.6756 1.6544 2.0510 34 1 3.9569 0.7329 1.7432 35 1 4.4299 2.2007 0.8543 36 1 3.9279 3.5744 2.8571 37 1 3.4551 2.1062 3.7454 38 1 6.0659 1.7328 2.7357 39 1 7.6202 1.4745 4.9226 40 1 8.0945 2.9417 4.0335 41 1 10.1474 4.4208 9.3550 42 1 2.4762 2.8203 -4.0454 43 1 1.3855 0.9817 -5.6342 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001703686817.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:48 Heat of formation + Delta-G solvation = -28.772960 kcal Electronic energy + Delta-G solvation = -25904.180240 eV Core-core repulsion = 21885.631063 eV Total energy + Delta-G solvation = -4018.549177 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -46.09201 -41.16843 -40.58447 -37.68880 -36.42643 -35.04183 -34.59333 -33.53469 -32.61462 -31.46215 -30.37726 -27.76241 -27.25584 -25.23016 -24.26789 -23.83346 -22.86696 -21.83709 -20.61550 -19.83333 -18.98857 -18.71272 -18.16401 -17.80782 -17.66880 -16.89737 -16.88295 -16.79088 -16.28339 -15.88356 -15.72948 -15.48200 -14.91928 -14.78861 -14.68478 -14.44656 -14.22418 -13.97541 -13.81252 -13.43091 -13.19624 -13.16885 -12.95601 -12.91328 -12.68301 -12.60909 -12.50639 -12.13272 -11.89952 -11.72184 -11.53167 -11.35668 -11.16608 -11.02531 -10.63463 -10.28742 -10.15325 -9.94654 -8.67911 -8.35618 -6.13910 0.06540 0.78150 1.25544 1.41019 1.45343 1.55915 1.58853 1.63158 1.96100 2.25128 2.27959 2.34187 2.80033 2.98572 3.30929 3.51456 3.82509 3.84809 3.91566 3.97484 4.05677 4.13114 4.23722 4.28074 4.33338 4.39100 4.48958 4.49673 4.53678 4.63548 4.70687 4.81466 4.94952 4.98237 5.00930 5.07690 5.31109 5.38516 5.41252 5.41786 6.07818 6.19319 6.47066 6.76239 7.05708 7.07326 7.21338 8.73957 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.026540 B = 0.001583 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.759010 B =17681.532806 C =18070.920534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.100 3.900 3 N -0.593 5.593 4 C 0.119 3.881 5 C -0.128 4.128 6 C 0.125 3.875 7 N -0.714 5.714 8 C 0.533 3.467 9 O -0.566 6.566 10 C -0.130 4.130 11 S -0.152 6.152 12 C -0.547 4.547 13 H 0.083 0.917 14 C 0.013 3.987 15 N -0.911 5.911 16 Si 1.000 3.000 17 H -0.257 1.257 18 H -0.274 1.274 19 H -0.273 1.273 20 C 0.588 3.412 21 O -0.560 6.560 22 C -0.057 4.057 23 C -0.210 4.210 24 C -0.023 4.023 25 O 0.121 5.879 26 N -0.331 5.331 27 H 0.043 0.957 28 H 0.083 0.917 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.110 0.890 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.416 0.584 39 H 0.112 0.888 40 H 0.108 0.892 41 H 0.271 0.729 42 H 0.184 0.816 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.635 -13.721 -30.717 38.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.022 4.022 3 N -0.324 5.324 4 C -0.004 4.004 5 C -0.167 4.167 6 C 0.001 3.999 7 N -0.368 5.368 8 C 0.319 3.681 9 O -0.444 6.444 10 C -0.281 4.281 11 S 0.075 5.925 12 C -0.694 4.694 13 H 0.101 0.899 14 C -0.192 4.192 15 N -0.548 5.548 16 Si 0.822 3.178 17 H -0.180 1.180 18 H -0.199 1.199 19 H -0.198 1.198 20 C 0.375 3.625 21 O -0.437 6.437 22 C -0.214 4.214 23 C -0.233 4.233 24 C -0.103 4.103 25 O 0.045 5.955 26 N -0.032 5.032 27 H 0.062 0.938 28 H 0.102 0.898 29 H 0.075 0.925 30 H 0.105 0.895 31 H 0.121 0.879 32 H 0.092 0.908 33 H 0.129 0.871 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.252 0.748 39 H 0.130 0.870 40 H 0.126 0.874 41 H 0.080 0.920 42 H 0.201 0.799 43 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -21.013 -12.837 -28.425 37.607 hybrid contribution 2.360 0.024 -0.937 2.540 sum -18.652 -12.812 -29.363 37.071 Atomic orbital electron populations 1.22054 0.94792 1.03257 1.01368 1.21971 0.95534 0.80074 1.04595 1.47965 1.63801 1.15478 1.05178 1.21474 0.95687 0.98659 0.84580 1.21967 0.97251 1.02135 0.95343 1.21239 0.81589 1.00309 0.96765 1.45735 1.13165 1.54568 1.23310 1.20077 0.88575 0.78489 0.80988 1.90691 1.61524 1.40214 1.51988 1.23375 0.96010 1.05918 1.02805 1.85580 1.13884 1.69165 1.23859 1.23246 0.95986 1.38603 1.11605 0.89888 1.26146 1.04585 0.94264 0.94209 1.70193 1.38928 1.34501 1.11152 0.84886 0.75936 0.78292 0.78703 1.18042 1.19943 1.19831 1.17365 0.78016 0.84384 0.82743 1.90804 1.45292 1.20785 1.86823 1.23526 1.05582 0.95405 0.96868 1.23033 1.06392 1.04286 0.89591 1.26869 0.96109 0.86524 1.00845 1.84792 1.57620 1.41797 1.11303 1.74412 1.14993 1.15380 0.98433 0.93758 0.89841 0.92531 0.89483 0.87937 0.90828 0.87143 0.88958 0.91792 0.92793 0.91042 0.74755 0.86997 0.87361 0.91969 0.79850 0.71062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.70 71.98 0.70 -1.00 16 2 C 0.10 1.15 5.67 86.38 0.49 1.64 16 3 N -0.59 -9.73 2.48 -824.67 -2.04 -11.77 16 4 C 0.12 1.86 5.36 86.38 0.46 2.33 16 5 C -0.13 -2.07 5.65 30.59 0.17 -1.90 16 6 C 0.13 2.81 5.67 86.38 0.49 3.30 16 7 N -0.71 -18.53 5.56 -463.05 -2.57 -21.11 16 8 C 0.53 20.15 7.85 87.66 0.69 20.84 16 9 O -0.57 -26.83 15.86 -3.04 -0.05 -26.88 16 10 C -0.13 -5.24 6.16 71.24 0.44 -4.80 16 11 S -0.15 -8.58 20.57 -56.49 -1.16 -9.74 16 12 C -0.55 -31.58 9.50 67.95 0.65 -30.93 16 13 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 14 C 0.01 0.73 5.49 84.86 0.47 1.19 16 15 N -0.91 -56.49 13.22 21.65 0.29 -56.20 16 16 Si 1.00 43.98 29.55 68.60 2.03 46.01 16 17 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 18 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 19 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 20 C 0.59 12.57 7.68 86.93 0.67 13.24 16 21 O -0.56 -15.88 16.59 -3.72 -0.06 -15.94 16 22 C -0.06 -0.95 6.69 42.96 0.29 -0.66 16 23 C -0.21 -2.31 11.00 22.60 0.25 -2.06 16 24 C -0.02 -0.08 12.28 67.15 0.82 0.74 16 25 O 0.12 1.07 11.18 71.86 0.80 1.87 16 26 N -0.33 -4.51 7.17 -49.51 -0.35 -4.87 16 27 H 0.04 0.63 6.60 -2.38 -0.02 0.61 16 28 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.09 1.10 5.76 -2.39 -0.01 1.08 16 31 H 0.10 0.80 8.05 -2.38 -0.02 0.78 16 32 H 0.07 1.44 7.50 -2.39 -0.02 1.43 16 33 H 0.11 1.23 8.07 -2.39 -0.02 1.21 16 34 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 36 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 37 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.42 7.97 8.47 -92.71 -0.79 7.18 16 39 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 40 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 41 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 42 H 0.18 1.78 8.06 -2.92 -0.02 1.75 16 43 H 0.27 -2.06 8.06 -2.91 -0.02 -2.09 16 Total: -1.00 -86.49 384.00 3.71 -82.78 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.25 Total: 13.92 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: 6.58 Total: 1.92 kcal Atomic # 7 Polarization: -89.27 SS G_CDS: -4.68 Total: -93.95 kcal Atomic # 8 Polarization: -41.64 SS G_CDS: 0.69 Total: -40.95 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Total: -86.49 3.71 -82.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703686817.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.009 kcal (2) G-P(sol) polarization free energy of solvation -86.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds