Wall clock time and date at job start Sat Apr 11 2020 06:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46500 * 109.47189 * 2 1 4 4 C 1.46498 * 119.99919 * 89.99650 * 3 2 1 5 5 C 1.53001 * 109.47425 * 269.99722 * 4 3 2 6 6 N 1.46493 * 109.47084 * 179.97438 * 5 4 3 7 7 C 1.34784 * 119.99864 * 180.02562 * 6 5 4 8 8 O 1.21494 * 119.99763 * 359.72900 * 7 6 5 9 9 C 1.48326 * 120.00252 * 179.72903 * 7 6 5 10 10 C 1.42271 * 126.94021 * 180.02562 * 9 7 6 11 11 C 1.35319 * 103.92108 * 179.97438 * 10 9 7 12 12 C 1.50694 * 126.66571 * 179.97438 * 11 10 9 13 13 O 1.34018 * 106.66812 * 359.97438 * 11 10 9 14 14 N 1.20905 * 111.84611 * 359.70838 * 13 11 10 15 15 C 1.34773 * 119.99764 * 269.99974 * 3 2 1 16 16 O 1.21282 * 120.00017 * 180.02562 * 15 3 2 17 17 C 1.50702 * 120.00367 * 359.97438 * 15 3 2 18 18 S 1.80996 * 109.47342 * 180.02562 * 17 15 3 19 19 C 1.76204 * 100.00090 * 180.02562 * 18 17 15 20 20 H 1.07998 * 119.99855 * 359.97438 * 19 18 17 21 21 C 1.38795 * 120.00008 * 179.97438 * 19 18 17 22 22 N 1.31627 * 119.99887 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99775 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47222 * 90.00002 * 23 21 19 25 25 H 1.48507 * 109.46967 * 209.99940 * 23 21 19 26 26 H 1.48501 * 109.47292 * 329.99513 * 23 21 19 27 27 H 1.08997 * 109.46441 * 60.00284 * 1 2 3 28 28 H 1.08996 * 109.47126 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47040 * 300.00401 * 1 2 3 30 30 H 1.08992 * 109.47040 * 239.99599 * 2 1 3 31 31 H 1.08998 * 109.46825 * 120.00086 * 2 1 3 32 32 H 1.09007 * 109.47027 * 150.00242 * 4 3 2 33 33 H 1.08993 * 109.47264 * 30.00300 * 4 3 2 34 34 H 1.09007 * 109.46593 * 60.00255 * 5 4 3 35 35 H 1.09006 * 109.47216 * 300.00713 * 5 4 3 36 36 H 0.97000 * 120.00740 * 359.72857 * 6 5 4 37 37 H 1.07999 * 128.04001 * 0.02562 * 10 9 7 38 38 H 1.08998 * 109.47694 * 89.99296 * 12 11 10 39 39 H 1.08999 * 109.47221 * 209.99985 * 12 11 10 40 40 H 1.09005 * 109.47143 * 329.99443 * 12 11 10 41 41 H 1.09003 * 109.46871 * 300.00237 * 17 15 3 42 42 H 1.09001 * 109.46735 * 60.00303 * 17 15 3 43 43 H 0.97006 * 119.99777 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 1.2687 5 6 0.9876 2.7932 1.7103 6 7 1.2316 3.4832 2.9793 7 6 0.2432 4.1896 3.5632 8 8 -0.8486 4.2580 3.0346 9 6 0.4884 4.8833 4.8511 10 6 -0.4418 5.6638 5.5925 11 6 0.2625 6.0687 6.6747 12 6 -0.2391 6.9320 7.8034 13 8 1.4929 5.5529 6.5476 14 7 1.6030 4.8952 5.5391 15 6 2.2431 2.0165 -1.1672 16 8 2.6478 3.1598 -1.1672 17 6 1.9924 1.3059 -2.4723 18 16 2.3851 2.4146 -3.8481 19 6 2.0116 1.3586 -5.2083 20 1 1.6565 0.3542 -5.0305 21 6 2.1737 1.8175 -6.5081 22 7 2.6059 3.0418 -6.7246 23 14 1.7770 0.6982 -7.9500 24 1 0.3520 0.8688 -8.3317 25 1 2.6439 1.0504 -9.1032 26 1 2.0197 -0.7144 -7.5616 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.0645 2.7985 1.1384 33 1 2.5506 1.3452 2.0283 34 1 0.1856 2.0664 1.8407 35 1 0.6995 3.5198 0.9506 36 1 2.1031 3.4283 3.4016 37 1 -1.4711 5.8817 5.3487 38 1 -0.6600 6.2997 8.5851 39 1 0.5878 7.5129 8.2117 40 1 -1.0082 7.6081 7.4296 41 1 2.6230 0.4186 -2.5298 42 1 0.9446 1.0114 -2.5302 43 1 2.7196 3.3624 -7.6331 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704261735.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:58 Heat of formation + Delta-G solvation = -9.667937 kcal Electronic energy + Delta-G solvation = -26160.515360 eV Core-core repulsion = 22142.794639 eV Total energy + Delta-G solvation = -4017.720721 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -45.49357 -40.09502 -39.46974 -36.26737 -35.04526 -34.56836 -33.76417 -32.43256 -31.34852 -29.89661 -28.37037 -28.17744 -25.54316 -25.10097 -23.37306 -23.23217 -22.59066 -20.61164 -19.14177 -18.25719 -18.04808 -17.73497 -17.22528 -16.84448 -16.33366 -15.76954 -15.53520 -15.15706 -14.80628 -14.64495 -14.19280 -14.05411 -13.97911 -13.86443 -13.80424 -13.71197 -13.34254 -13.08720 -12.96754 -12.58290 -12.39201 -11.94267 -11.88940 -11.84755 -11.54414 -11.09038 -11.04607 -11.01614 -10.86090 -10.75967 -10.64683 -9.87894 -9.81477 -9.44487 -9.40555 -9.06858 -8.73182 -8.23389 -6.50739 -6.21860 -3.92695 0.70795 1.24868 2.37482 2.54193 2.83952 2.97574 3.00999 3.22294 3.25788 3.30085 3.53118 3.63249 4.07800 4.19811 4.48387 4.60391 4.66675 4.69321 4.83507 4.84774 4.87609 5.00846 5.07651 5.13122 5.17622 5.18771 5.26219 5.33146 5.49600 5.51248 5.59475 5.72846 5.75472 5.83687 5.90038 5.99291 6.05237 6.22127 6.56305 7.01437 7.43167 7.56621 7.59297 7.76605 8.34824 8.47932 9.23423 10.85552 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.023776 B = 0.001853 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.374680 B =15105.785292 C =15539.264793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.106 3.894 3 N -0.618 5.618 4 C 0.109 3.891 5 C 0.100 3.900 6 N -0.710 5.710 7 C 0.599 3.401 8 O -0.517 6.517 9 C -0.022 4.022 10 C -0.184 4.184 11 C -0.032 4.032 12 C -0.074 4.074 13 O 0.121 5.879 14 N -0.332 5.332 15 C 0.534 3.466 16 O -0.511 6.511 17 C -0.150 4.150 18 S -0.062 6.062 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.407 0.593 37 H 0.182 0.818 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.884 -0.185 30.175 30.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.017 4.017 3 N -0.354 5.354 4 C -0.016 4.016 5 C -0.024 4.024 6 N -0.362 5.362 7 C 0.382 3.618 8 O -0.391 6.391 9 C -0.181 4.181 10 C -0.207 4.207 11 C -0.095 4.095 12 C -0.132 4.132 13 O 0.046 5.954 14 N -0.034 5.034 15 C 0.323 3.677 16 O -0.385 6.385 17 C -0.301 4.301 18 S 0.165 5.835 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.242 0.758 37 H 0.199 0.801 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.114 0.886 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.822 1.094 29.351 29.618 hybrid contribution -1.175 -1.891 -0.831 2.376 sum -4.996 -0.797 28.520 28.965 Atomic orbital electron populations 1.22325 0.95866 1.02400 1.02940 1.21608 0.94588 0.82048 1.03443 1.47895 1.68150 1.14342 1.04987 1.21437 0.96790 0.97344 0.85992 1.22009 0.98946 0.96896 0.84525 1.45690 1.14889 1.51398 1.24259 1.16827 0.84517 0.78496 0.81977 1.90836 1.23702 1.61243 1.63289 1.23492 0.91511 1.03991 0.99145 1.22466 1.02600 1.01507 0.94112 1.24531 0.84533 1.00607 0.99857 1.20394 1.02053 0.97453 0.93283 1.84774 1.30698 1.47428 1.32512 1.74168 1.22129 1.10956 0.96113 1.20424 0.76215 0.86501 0.84606 1.90711 1.43599 1.17417 1.86731 1.23584 1.04904 1.04541 0.97036 1.85417 1.86778 1.17947 0.93355 1.22852 1.51835 1.01470 0.92184 0.90918 1.24989 0.94642 0.95549 0.98377 1.70020 1.42903 1.15648 1.21667 0.86171 0.78427 0.80195 0.80722 1.20263 1.20748 1.19689 0.91713 0.91439 0.92341 0.89600 0.90502 0.89020 0.90109 0.90631 0.90112 0.75827 0.80104 0.89080 0.89463 0.88636 0.89175 0.89066 0.92179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.76 10.24 37.16 0.38 -1.38 16 2 C 0.11 1.08 5.98 -4.04 -0.02 1.06 16 3 N -0.62 -8.32 2.47 -173.69 -0.43 -8.75 16 4 C 0.11 1.23 5.56 -4.04 -0.02 1.20 16 5 C 0.10 1.22 6.00 -4.04 -0.02 1.20 16 6 N -0.71 -7.92 5.55 -61.09 -0.34 -8.26 16 7 C 0.60 7.75 7.85 -12.11 -0.10 7.66 16 8 O -0.52 -8.30 16.95 5.37 0.09 -8.21 16 9 C -0.02 -0.24 7.19 -82.53 -0.59 -0.84 16 10 C -0.18 -1.57 10.92 -39.07 -0.43 -1.99 16 11 C -0.03 -0.21 7.47 -35.35 -0.26 -0.47 16 12 C -0.07 -0.15 10.44 36.00 0.38 0.22 16 13 O 0.12 1.03 11.18 17.24 0.19 1.22 16 14 N -0.33 -3.43 11.84 33.29 0.39 -3.04 16 15 C 0.53 9.98 7.69 -10.99 -0.08 9.89 16 16 O -0.51 -11.52 15.44 5.56 0.09 -11.44 16 17 C -0.15 -3.02 4.71 36.01 0.17 -2.86 16 18 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 19 C -0.54 -15.24 9.50 30.94 0.29 -14.94 16 20 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.23 13.22 55.49 0.73 -25.50 16 23 Si 0.92 21.44 29.55 -169.99 -5.02 16.41 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 H 0.06 0.78 7.22 -51.93 -0.38 0.40 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.57 6.26 -51.93 -0.33 0.25 16 30 H 0.09 0.90 6.44 -51.93 -0.33 0.56 16 31 H 0.08 0.58 7.89 -51.93 -0.41 0.17 16 32 H 0.09 1.17 7.42 -51.93 -0.39 0.78 16 33 H 0.08 0.65 7.89 -51.93 -0.41 0.24 16 34 H 0.08 0.89 6.26 -51.93 -0.33 0.56 16 35 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.41 3.71 8.23 -40.82 -0.34 3.37 16 37 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 39 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 40 H 0.09 0.09 8.14 -51.93 -0.42 -0.34 16 41 H 0.09 1.67 7.40 -51.91 -0.38 1.28 16 42 H 0.09 1.71 7.19 -51.92 -0.37 1.34 16 43 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 384.25 15.07 5.79 5.79 Total: -1.00 -37.29 384.25 -6.87 -44.15 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -5.74 Total: 0.74 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -0.41 Total: 0.76 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: 0.36 Total: -45.54 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: 0.37 Total: -18.43 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.29 -6.87 -44.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704261735.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.485 kcal (2) G-P(sol) polarization free energy of solvation -37.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds