Wall clock time and date at job start Sat Apr 11 2020 06:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46500 * 109.47189 * 2 1 4 4 C 1.46498 * 119.99919 * 89.99650 * 3 2 1 5 5 C 1.53001 * 109.47425 * 269.99722 * 4 3 2 6 6 N 1.46493 * 109.47084 * 179.97438 * 5 4 3 7 7 C 1.34784 * 119.99864 * 180.02562 * 6 5 4 8 8 O 1.21588 * 119.99858 * 359.72927 * 7 6 5 9 9 C 1.47511 * 120.00157 * 179.72952 * 7 6 5 10 10 C 1.36822 * 126.94584 * 179.71089 * 9 7 6 11 11 C 1.41258 * 103.84582 * 179.90210 * 10 9 7 12 12 C 1.50702 * 126.70167 * 180.12234 * 11 10 9 13 13 N 1.30124 * 106.59290 * 0.36259 * 11 10 9 14 14 O 1.20888 * 111.97828 * 359.76332 * 13 11 10 15 15 C 1.34773 * 119.99764 * 269.99974 * 3 2 1 16 16 O 1.21282 * 120.00017 * 180.02562 * 15 3 2 17 17 C 1.50702 * 120.00367 * 359.97438 * 15 3 2 18 18 S 1.80996 * 109.47342 * 180.02562 * 17 15 3 19 19 C 1.76204 * 100.00090 * 180.02562 * 18 17 15 20 20 H 1.07998 * 119.99855 * 359.97438 * 19 18 17 21 21 C 1.38795 * 120.00008 * 179.97438 * 19 18 17 22 22 N 1.31627 * 119.99887 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99775 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47582 * 59.99893 * 23 21 19 25 25 H 1.48503 * 109.47019 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47048 * 299.99583 * 23 21 19 27 27 H 1.08992 * 109.47040 * 300.00401 * 1 2 3 28 28 H 1.08997 * 109.46441 * 60.00284 * 1 2 3 29 29 H 1.08996 * 109.47126 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47040 * 239.99599 * 2 1 3 31 31 H 1.08998 * 109.46825 * 120.00086 * 2 1 3 32 32 H 1.09007 * 109.47027 * 150.00242 * 4 3 2 33 33 H 1.08993 * 109.47264 * 30.00300 * 4 3 2 34 34 H 1.09007 * 109.46593 * 60.00255 * 5 4 3 35 35 H 1.09006 * 109.47216 * 300.00713 * 5 4 3 36 36 H 0.97000 * 120.00740 * 359.72857 * 6 5 4 37 37 H 1.08003 * 128.07562 * 0.02562 * 10 9 7 38 38 H 1.08999 * 109.47395 * 270.25598 * 12 11 10 39 39 H 1.08995 * 109.47302 * 30.26108 * 12 11 10 40 40 H 1.09003 * 109.46701 * 150.25789 * 12 11 10 41 41 H 1.09003 * 109.46871 * 300.00237 * 17 15 3 42 42 H 1.09001 * 109.46735 * 60.00303 * 17 15 3 43 43 H 0.97006 * 119.99777 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 1.2687 5 6 0.9876 2.7932 1.7103 6 7 1.2316 3.4832 2.9793 7 6 0.2432 4.1896 3.5632 8 8 -0.8494 4.2580 3.0342 9 6 0.4871 4.8795 4.8440 10 6 -0.4056 5.6350 5.5541 11 6 0.3298 6.0529 6.6855 12 6 -0.1690 6.9163 7.8155 13 7 1.5236 5.5509 6.5588 14 8 1.6348 4.8977 5.5476 15 6 2.2431 2.0165 -1.1672 16 8 2.6478 3.1598 -1.1672 17 6 1.9924 1.3059 -2.4723 18 16 2.3851 2.4146 -3.8481 19 6 2.0116 1.3586 -5.2083 20 1 1.6565 0.3542 -5.0305 21 6 2.1737 1.8175 -6.5081 22 7 2.6059 3.0418 -6.7246 23 14 1.7770 0.6982 -7.9500 24 1 0.3487 0.2967 -7.8868 25 1 2.0329 1.4203 -9.2222 26 1 2.6347 -0.5124 -7.8875 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.0645 2.7985 1.1384 33 1 2.5506 1.3452 2.0283 34 1 0.1856 2.0664 1.8407 35 1 0.6995 3.5198 0.9506 36 1 2.1031 3.4283 3.4016 37 1 -1.4334 5.8581 5.3082 38 1 0.0105 7.9649 7.5781 39 1 -1.2378 6.7527 7.9533 40 1 0.3596 6.6557 8.7324 41 1 2.6230 0.4186 -2.5298 42 1 0.9446 1.0114 -2.5302 43 1 2.7196 3.3624 -7.6331 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704262493.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:02 Heat of formation + Delta-G solvation = -9.424916 kcal Electronic energy + Delta-G solvation = -26195.132245 eV Core-core repulsion = 22177.422062 eV Total energy + Delta-G solvation = -4017.710183 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -45.43352 -40.17290 -39.52466 -36.32949 -35.47363 -34.95468 -32.63714 -32.43841 -31.29810 -29.90541 -29.18547 -28.16359 -25.52029 -24.67573 -23.39108 -23.35813 -22.59067 -20.67276 -19.30018 -18.67622 -18.22474 -17.74564 -16.91217 -16.62625 -16.50023 -15.82388 -15.57341 -15.23935 -14.81171 -14.61382 -14.15501 -14.04153 -13.91036 -13.86126 -13.73849 -13.62877 -13.36191 -13.23697 -13.10144 -12.59112 -12.41510 -11.93528 -11.90990 -11.83723 -11.56442 -11.09724 -11.05294 -11.02739 -10.77994 -10.75846 -10.55960 -10.16785 -9.83060 -9.49031 -9.45940 -9.06764 -8.75478 -8.24765 -6.51574 -6.22347 -3.93374 0.38603 1.59578 2.12490 2.60833 2.61769 2.96235 3.04875 3.22923 3.25918 3.28850 3.57328 3.60634 4.02807 4.19344 4.46601 4.58045 4.59407 4.67455 4.84196 4.88410 4.97984 4.98553 5.12443 5.13194 5.15047 5.16752 5.24963 5.31522 5.49607 5.56361 5.57497 5.69664 5.73629 5.77370 5.88147 5.91504 6.03828 6.20589 6.54103 6.88716 7.40861 7.54239 7.58366 7.68218 8.33974 8.46040 9.22827 10.84980 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.023839 B = 0.001861 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.245384 B =15041.253017 C =15473.258192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.106 3.894 3 N -0.618 5.618 4 C 0.108 3.892 5 C 0.099 3.901 6 N -0.709 5.709 7 C 0.606 3.394 8 O -0.507 6.507 9 C -0.081 4.081 10 C -0.150 4.150 11 C 0.010 3.990 12 C -0.077 4.077 13 N -0.345 5.345 14 O 0.117 5.883 15 C 0.535 3.465 16 O -0.511 6.511 17 C -0.151 4.151 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.408 0.592 37 H 0.184 0.816 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.791 -1.682 27.719 28.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.017 4.017 3 N -0.354 5.354 4 C -0.016 4.016 5 C -0.025 4.025 6 N -0.361 5.361 7 C 0.388 3.612 8 O -0.382 6.382 9 C -0.147 4.147 10 C -0.173 4.173 11 C -0.147 4.147 12 C -0.134 4.134 13 N -0.046 5.046 14 O 0.044 5.956 15 C 0.323 3.677 16 O -0.384 6.384 17 C -0.301 4.301 18 S 0.165 5.835 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.111 0.889 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.243 0.757 37 H 0.202 0.798 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.098 0.902 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.824 0.256 27.899 28.161 hybrid contribution -1.143 -2.021 -1.022 2.537 sum -4.967 -1.764 26.877 27.389 Atomic orbital electron populations 1.22326 0.95864 1.02416 1.02932 1.21609 0.94577 0.82039 1.03471 1.47895 1.68171 1.14346 1.04983 1.21448 0.96740 0.97409 0.86052 1.22053 0.99104 0.96973 0.84365 1.45721 1.14798 1.51208 1.24388 1.16468 0.84767 0.78668 0.81280 1.90916 1.23576 1.61300 1.62394 1.24228 0.87669 1.05194 0.97591 1.22897 1.02423 0.98526 0.93412 1.23686 0.89941 1.01941 0.99168 1.20225 1.01879 0.97733 0.93593 1.73744 1.20539 1.08334 1.02025 1.84974 1.33016 1.52697 1.24926 1.20421 0.76196 0.86497 0.84606 1.90712 1.43576 1.17409 1.86727 1.23586 1.04906 1.04558 0.97057 1.85411 1.86790 1.17911 0.93341 1.22811 1.51962 1.01457 0.92196 0.90967 1.24985 0.94636 0.95533 0.98365 1.70007 1.42830 1.15616 1.21782 0.86231 0.78965 0.80029 0.80318 1.19925 1.20812 1.19939 0.92320 0.91721 0.91449 0.89620 0.90462 0.88919 0.89992 0.90465 0.89947 0.75683 0.79825 0.89741 0.89595 0.90206 0.89179 0.89067 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.63 10.24 37.16 0.38 -1.25 16 2 C 0.11 1.00 5.98 -4.04 -0.02 0.98 16 3 N -0.62 -7.75 2.47 -173.69 -0.43 -8.17 16 4 C 0.11 1.07 5.56 -4.04 -0.02 1.05 16 5 C 0.10 1.05 6.00 -4.04 -0.02 1.02 16 6 N -0.71 -6.38 5.55 -61.35 -0.34 -6.72 16 7 C 0.61 6.61 7.82 -12.48 -0.10 6.51 16 8 O -0.51 -7.25 16.91 5.29 0.09 -7.16 16 9 C -0.08 -0.77 7.29 -36.32 -0.26 -1.03 16 10 C -0.15 -1.27 10.91 -38.95 -0.43 -1.69 16 11 C 0.01 0.08 7.31 -82.17 -0.60 -0.52 16 12 C -0.08 -0.35 10.47 36.01 0.38 0.02 16 13 N -0.34 -3.43 12.04 33.52 0.40 -3.03 16 14 O 0.12 1.10 11.04 15.56 0.17 1.27 16 15 C 0.53 9.57 7.69 -10.99 -0.08 9.48 16 16 O -0.51 -11.10 15.44 5.56 0.09 -11.01 16 17 C -0.15 -2.95 4.71 36.01 0.17 -2.78 16 18 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 19 C -0.54 -15.07 9.50 30.94 0.29 -14.78 16 20 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.00 13.22 55.49 0.73 -25.26 16 23 Si 0.92 21.22 29.55 -169.99 -5.02 16.19 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 H 0.06 0.52 6.26 -51.93 -0.33 0.20 16 28 H 0.06 0.73 7.22 -51.93 -0.38 0.36 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.84 6.44 -51.93 -0.33 0.51 16 31 H 0.08 0.52 7.89 -51.93 -0.41 0.11 16 32 H 0.09 1.05 7.42 -51.93 -0.39 0.66 16 33 H 0.08 0.54 7.89 -51.93 -0.41 0.13 16 34 H 0.08 0.79 6.26 -51.93 -0.33 0.46 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.41 2.58 8.30 -40.82 -0.34 2.24 16 37 H 0.18 1.23 8.06 -52.48 -0.42 0.81 16 38 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.09 1.62 7.40 -51.91 -0.38 1.24 16 42 H 0.09 1.67 7.19 -51.92 -0.37 1.29 16 43 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 384.28 15.07 5.79 5.79 Total: -1.00 -36.47 384.28 -6.89 -43.36 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -5.74 Total: -0.43 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -0.42 Total: -0.98 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: 0.37 Total: -43.18 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: 0.35 Total: -16.90 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.47 -6.89 -43.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704262493.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.934 kcal (2) G-P(sol) polarization free energy of solvation -36.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds