Wall clock time and date at job start Sat Apr 11 2020 06:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46824 * 124.33439 * 2 1 4 4 C 1.54478 * 105.44535 * 197.00379 * 3 2 1 5 5 H 1.08996 * 110.96773 * 92.76665 * 4 3 2 6 6 C 1.50696 * 110.96828 * 216.49568 * 4 3 2 7 7 O 1.21279 * 120.00129 * 356.91438 * 6 4 3 8 8 N 1.34777 * 119.99861 * 176.90847 * 6 4 3 9 9 C 1.46504 * 120.00006 * 179.97438 * 8 6 4 10 10 C 1.53498 * 114.20757 * 154.99987 * 9 8 6 11 11 N 1.47067 * 87.98331 * 87.71583 * 10 9 8 12 12 C 1.34778 * 136.05920 * 207.07949 * 11 10 9 13 13 O 1.21278 * 119.99748 * 0.02562 * 12 11 10 14 14 C 1.50697 * 120.00209 * 180.02562 * 12 11 10 15 15 S 1.80999 * 109.47181 * 180.02562 * 14 12 11 16 16 C 1.76199 * 99.99825 * 179.97438 * 15 14 12 17 17 H 1.08002 * 120.00405 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99855 * 179.72221 * 16 15 14 19 19 N 1.31634 * 119.99756 * 0.27728 * 18 16 15 20 20 Si 1.86803 * 120.00005 * 180.27923 * 18 16 15 21 21 H 1.48496 * 109.47141 * 59.99753 * 20 18 16 22 22 H 1.48497 * 109.46782 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46993 * 300.00030 * 20 18 16 24 24 C 1.47062 * 87.88347 * 27.34516 * 11 10 9 25 25 C 1.54636 * 101.79579 * 334.63081 * 4 3 2 26 26 C 1.34418 * 124.34771 * 180.02562 * 2 1 3 27 27 O 1.21283 * 124.94335 * 359.55136 * 26 2 1 28 28 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46584 * 299.93460 * 1 2 3 30 30 H 1.08998 * 109.47067 * 59.92948 * 1 2 3 31 31 H 1.09001 * 110.23584 * 78.02302 * 3 2 1 32 32 H 1.08998 * 110.28371 * 316.00668 * 3 2 1 33 33 H 0.96999 * 120.00525 * 0.02562 * 8 6 4 34 34 H 1.08997 * 113.28115 * 21.93676 * 9 8 6 35 35 H 1.09006 * 113.46469 * 332.93898 * 10 9 8 36 36 H 1.08995 * 113.52333 * 202.50687 * 10 9 8 37 37 H 1.08999 * 109.47278 * 59.99800 * 14 12 11 38 38 H 1.09002 * 109.46837 * 300.00183 * 14 12 11 39 39 H 0.97000 * 119.99219 * 179.97438 * 19 18 16 40 40 H 1.08997 * 113.47036 * 87.43853 * 24 11 10 41 41 H 1.09002 * 113.46736 * 217.87756 * 24 11 10 42 42 H 1.09000 * 110.47892 * 143.45811 * 25 4 3 43 43 H 1.09000 * 110.48845 * 265.96859 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2932 1.2124 0.0000 4 6 3.7010 0.7490 -0.4354 5 1 3.8274 0.8459 -1.5137 6 6 4.7717 1.5121 0.3010 7 8 4.4648 2.3987 1.0695 8 7 6.0704 1.2092 0.1057 9 6 7.1113 1.9514 0.8212 10 6 8.4250 1.1780 1.0011 11 7 8.8494 1.6972 -0.3078 12 6 9.6776 1.2915 -1.2906 13 8 10.2828 0.2462 -1.1806 14 6 9.8517 2.1365 -2.5261 15 16 11.0179 1.3287 -3.6502 16 6 11.0317 2.4977 -4.9685 17 1 10.4257 3.3895 -4.9059 18 6 11.8264 2.2756 -6.0846 19 7 12.5655 1.1890 -6.1607 20 14 11.8471 3.5188 -7.4788 21 1 12.3106 4.8323 -6.9640 22 1 12.7687 3.0512 -8.5452 23 1 10.4778 3.6607 -8.0357 24 6 7.9776 2.8573 -0.0693 25 6 3.6898 -0.7379 -0.0109 26 6 2.2235 -1.1098 -0.0005 27 8 1.7946 -2.2442 0.0068 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5128 0.8906 30 1 -0.3633 0.5149 -0.8893 31 1 2.3306 1.6434 1.0005 32 1 1.8990 1.9393 -0.7101 33 1 6.3160 0.5003 -0.5092 34 1 6.7493 2.4346 1.7287 35 1 8.2930 0.0961 1.0169 36 1 9.0331 1.5404 1.8298 37 1 10.2372 3.1165 -2.2447 38 1 8.8894 2.2541 -3.0244 39 1 13.1205 1.0337 -6.9409 40 1 8.4672 3.6632 0.4773 41 1 7.4644 3.2061 -0.9655 42 1 4.2326 -1.3454 -0.7351 43 1 4.1217 -0.8541 0.9832 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704525993.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:11 Heat of formation + Delta-G solvation = -55.218334 kcal Electronic energy + Delta-G solvation = -26502.139467 eV Core-core repulsion = 22482.443533 eV Total energy + Delta-G solvation = -4019.695934 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.40723 -40.59996 -39.28407 -37.65333 -36.62419 -34.24386 -33.21433 -32.48153 -30.48797 -28.36929 -27.99369 -27.17915 -26.19704 -25.50139 -24.03746 -21.79584 -20.81261 -20.00290 -19.14797 -18.20354 -17.75905 -17.27857 -16.80736 -16.72347 -16.12320 -15.83262 -15.50182 -15.42689 -15.20362 -14.85059 -14.32673 -14.25038 -14.04112 -13.95910 -13.76946 -13.46811 -13.09046 -12.91952 -12.88590 -12.68648 -12.64939 -12.23317 -12.04879 -11.97193 -11.86835 -11.33172 -11.08867 -11.08027 -10.81664 -10.60522 -10.17184 -9.88945 -9.64166 -9.44546 -9.19292 -9.11161 -8.77306 -8.31570 -6.57258 -6.26774 -3.98420 2.01722 2.14536 2.35518 2.63448 2.68183 2.95643 3.19590 3.20220 3.25291 3.48531 3.66981 3.77188 3.98199 4.15072 4.15649 4.35091 4.44568 4.59561 4.80515 4.81970 4.86670 4.91167 5.01621 5.08350 5.08602 5.16439 5.20011 5.28917 5.29738 5.33292 5.36650 5.40095 5.47744 5.79338 5.86057 5.97624 6.03026 6.05935 6.59074 6.96540 7.53998 7.65086 7.70399 7.71047 8.29639 8.41870 9.18368 10.80553 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013361 B = 0.002186 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.092849 B =12808.512724 C =13636.600059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.624 5.624 3 C 0.119 3.881 4 C -0.126 4.126 5 H 0.124 0.876 6 C 0.534 3.466 7 O -0.531 6.531 8 N -0.703 5.703 9 C 0.105 3.895 10 C 0.097 3.903 11 N -0.655 5.655 12 C 0.562 3.438 13 O -0.512 6.512 14 C -0.145 4.145 15 S -0.059 6.059 16 C -0.537 4.537 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.282 1.282 23 H -0.274 1.274 24 C 0.088 3.912 25 C -0.146 4.146 26 C 0.520 3.480 27 O -0.528 6.528 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.409 0.591 34 H 0.127 0.873 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.270 0.730 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.115 0.885 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.277 3.212 15.522 26.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.359 5.359 3 C -0.005 4.005 4 C -0.148 4.148 5 H 0.141 0.859 6 C 0.320 3.680 7 O -0.407 6.407 8 N -0.353 5.353 9 C -0.002 4.002 10 C -0.027 4.027 11 N -0.395 5.395 12 C 0.352 3.648 13 O -0.385 6.385 14 C -0.295 4.295 15 S 0.167 5.833 16 C -0.685 4.685 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.037 4.037 25 C -0.187 4.187 26 C 0.307 3.693 27 O -0.405 6.405 28 H 0.102 0.898 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.245 0.755 34 H 0.145 0.855 35 H 0.101 0.899 36 H 0.115 0.885 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.079 0.921 40 H 0.115 0.885 41 H 0.101 0.899 42 H 0.133 0.867 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -20.624 1.497 15.935 26.106 hybrid contribution -0.386 1.904 -1.445 2.421 sum -21.010 3.401 14.490 25.748 Atomic orbital electron populations 1.21594 0.77580 1.03909 1.01802 1.48200 1.06825 1.07234 1.73682 1.21983 0.87604 0.86917 1.03964 1.22263 0.94398 0.95355 1.02796 0.85854 1.20040 0.83015 0.83231 0.81751 1.90732 1.82019 1.31398 1.36600 1.45532 1.04912 1.38534 1.46352 1.22295 0.87151 0.94153 0.96557 1.23270 0.91588 1.00915 0.86906 1.49807 1.46758 1.24677 1.18242 1.19975 0.76184 0.85981 0.82690 1.90731 1.44545 1.24037 1.79206 1.23471 1.06127 1.02708 0.97212 1.85413 1.52853 1.30498 1.14499 1.22802 1.31896 1.08981 1.04799 0.90984 1.24999 0.94494 0.96073 0.97982 1.70006 1.25577 1.25015 1.29606 0.86215 0.78203 0.80609 0.80426 1.19912 1.20763 1.19924 1.23535 0.89452 0.90887 0.99836 1.22366 0.95801 0.94803 1.05684 1.20732 0.88901 0.84431 0.75186 1.90755 1.78409 1.21014 1.50289 0.89779 0.91825 0.91785 0.88882 0.89453 0.75531 0.85528 0.89879 0.88458 0.89313 0.89388 0.92060 0.88547 0.89900 0.86699 0.87098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.52 11.14 59.85 0.67 1.19 16 2 N -0.62 -4.59 3.33 -180.24 -0.60 -5.19 16 3 C 0.12 0.69 6.69 -3.09 -0.02 0.67 16 4 C -0.13 -0.69 3.54 -90.14 -0.32 -1.01 16 5 H 0.12 0.51 8.14 -51.93 -0.42 0.08 16 6 C 0.53 3.87 7.06 -10.99 -0.08 3.79 16 7 O -0.53 -5.38 15.12 5.56 0.08 -5.30 16 8 N -0.70 -4.77 5.39 -53.49 -0.29 -5.05 16 9 C 0.11 0.74 4.61 -67.68 -0.31 0.43 16 10 C 0.10 0.84 8.38 -8.51 -0.07 0.76 16 11 N -0.66 -8.04 3.69 -185.10 -0.68 -8.72 16 12 C 0.56 10.07 8.10 -10.99 -0.09 9.98 16 13 O -0.51 -11.31 16.64 5.56 0.09 -11.21 16 14 C -0.14 -2.83 5.98 36.00 0.22 -2.62 16 15 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 16 C -0.54 -14.97 9.50 30.94 0.29 -14.68 16 17 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 18 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 19 N -0.87 -25.75 13.22 55.49 0.73 -25.02 16 20 Si 0.92 21.03 29.55 -169.99 -5.02 16.00 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 C 0.09 0.74 8.26 -8.38 -0.07 0.67 16 25 C -0.15 -0.91 6.40 -26.74 -0.17 -1.08 16 26 C 0.52 4.92 8.03 -10.86 -0.09 4.84 16 27 O -0.53 -7.18 17.35 5.56 0.10 -7.09 16 28 H 0.08 0.57 7.53 -51.93 -0.39 0.18 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.09 0.62 7.01 -51.93 -0.36 0.26 16 32 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.41 2.61 8.76 -40.82 -0.36 2.26 16 34 H 0.13 0.81 7.45 -51.93 -0.39 0.42 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 38 H 0.09 1.59 8.14 -51.91 -0.42 1.17 16 39 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.11 0.64 7.89 -51.93 -0.41 0.23 16 LS Contribution 383.68 15.07 5.78 5.78 Total: -1.00 -38.40 383.68 -8.26 -46.66 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -6.10 Total: -2.00 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -0.14 Total: 4.92 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: -0.84 Total: -43.99 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: 0.27 Total: -23.60 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -38.40 -8.26 -46.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704525993.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.557 kcal (2) G-P(sol) polarization free energy of solvation -38.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds