Wall clock time and date at job start Sat Apr 11 2020 06:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46824 * 124.33439 * 2 1 4 4 C 1.54478 * 105.44535 * 197.00379 * 3 2 1 5 5 H 1.08996 * 110.96773 * 92.76665 * 4 3 2 6 6 C 1.50696 * 110.96828 * 216.49568 * 4 3 2 7 7 O 1.21279 * 120.00129 * 356.91438 * 6 4 3 8 8 N 1.34777 * 119.99861 * 176.90847 * 6 4 3 9 9 C 1.46504 * 120.00006 * 179.97438 * 8 6 4 10 10 C 1.53498 * 114.20757 * 154.99987 * 9 8 6 11 11 N 1.47067 * 87.98331 * 87.71583 * 10 9 8 12 12 C 1.34778 * 136.05920 * 207.07949 * 11 10 9 13 13 O 1.21278 * 119.99748 * 0.02562 * 12 11 10 14 14 C 1.50697 * 120.00209 * 180.02562 * 12 11 10 15 15 S 1.80999 * 109.47181 * 180.02562 * 14 12 11 16 16 C 1.76199 * 99.99825 * 179.97438 * 15 14 12 17 17 H 1.08002 * 120.00405 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99855 * 179.72221 * 16 15 14 19 19 N 1.31634 * 119.99756 * 0.27728 * 18 16 15 20 20 Si 1.86803 * 120.00005 * 180.27923 * 18 16 15 21 21 H 1.48496 * 109.47141 * 59.99753 * 20 18 16 22 22 H 1.48497 * 109.46782 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46993 * 300.00030 * 20 18 16 24 24 C 1.47062 * 87.88347 * 27.34516 * 11 10 9 25 25 C 1.54636 * 101.79579 * 334.63081 * 4 3 2 26 26 C 1.34418 * 124.34771 * 180.02562 * 2 1 3 27 27 O 1.21283 * 124.94335 * 359.55136 * 26 2 1 28 28 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46584 * 299.93460 * 1 2 3 30 30 H 1.08998 * 109.47067 * 59.92948 * 1 2 3 31 31 H 1.09001 * 110.23584 * 78.02302 * 3 2 1 32 32 H 1.08998 * 110.28371 * 316.00668 * 3 2 1 33 33 H 0.96999 * 120.00525 * 0.02562 * 8 6 4 34 34 H 1.08997 * 113.28115 * 21.93676 * 9 8 6 35 35 H 1.09006 * 113.46469 * 332.93898 * 10 9 8 36 36 H 1.08995 * 113.52333 * 202.50687 * 10 9 8 37 37 H 1.08999 * 109.47278 * 59.99800 * 14 12 11 38 38 H 1.09002 * 109.46837 * 300.00183 * 14 12 11 39 39 H 0.97000 * 119.99219 * 179.97438 * 19 18 16 40 40 H 1.08997 * 113.47036 * 87.43853 * 24 11 10 41 41 H 1.09002 * 113.46736 * 217.87756 * 24 11 10 42 42 H 1.09000 * 110.47892 * 143.45811 * 25 4 3 43 43 H 1.09000 * 110.48845 * 265.96859 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2932 1.2124 0.0000 4 6 3.7010 0.7490 -0.4354 5 1 3.8274 0.8459 -1.5137 6 6 4.7717 1.5121 0.3010 7 8 4.4648 2.3987 1.0695 8 7 6.0704 1.2092 0.1057 9 6 7.1113 1.9514 0.8212 10 6 8.4250 1.1780 1.0011 11 7 8.8494 1.6972 -0.3078 12 6 9.6776 1.2915 -1.2906 13 8 10.2828 0.2462 -1.1806 14 6 9.8517 2.1365 -2.5261 15 16 11.0179 1.3287 -3.6502 16 6 11.0317 2.4977 -4.9685 17 1 10.4257 3.3895 -4.9059 18 6 11.8264 2.2756 -6.0846 19 7 12.5655 1.1890 -6.1607 20 14 11.8471 3.5188 -7.4788 21 1 12.3106 4.8323 -6.9640 22 1 12.7687 3.0512 -8.5452 23 1 10.4778 3.6607 -8.0357 24 6 7.9776 2.8573 -0.0693 25 6 3.6898 -0.7379 -0.0109 26 6 2.2235 -1.1098 -0.0005 27 8 1.7946 -2.2442 0.0068 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5128 0.8906 30 1 -0.3633 0.5149 -0.8893 31 1 2.3306 1.6434 1.0005 32 1 1.8990 1.9393 -0.7101 33 1 6.3160 0.5003 -0.5092 34 1 6.7493 2.4346 1.7287 35 1 8.2930 0.0961 1.0169 36 1 9.0331 1.5404 1.8298 37 1 10.2372 3.1165 -2.2447 38 1 8.8894 2.2541 -3.0244 39 1 13.1205 1.0337 -6.9409 40 1 8.4672 3.6632 0.4773 41 1 7.4644 3.2061 -0.9655 42 1 4.2326 -1.3454 -0.7351 43 1 4.1217 -0.8541 0.9832 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704525993.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:10 Heat of formation + Delta-G solvation = -84.951998 kcal Electronic energy + Delta-G solvation = -26503.428816 eV Core-core repulsion = 22482.443533 eV Total energy + Delta-G solvation = -4020.985283 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.06375 -41.41640 -40.12111 -38.83459 -37.35566 -34.91665 -34.59122 -33.78877 -31.81163 -29.26741 -28.72784 -27.80168 -27.61599 -26.90427 -24.65550 -22.61389 -21.39905 -20.65027 -20.32798 -19.49663 -18.74332 -18.03576 -17.84598 -17.48667 -16.90524 -16.84594 -16.74589 -16.60295 -16.29463 -15.99533 -15.68621 -15.12924 -14.82115 -14.77089 -14.59794 -14.49844 -14.18014 -14.01497 -13.61468 -13.45345 -13.37327 -13.19340 -13.18371 -13.02714 -12.87154 -12.61327 -12.51285 -12.39572 -12.05095 -11.75848 -11.28963 -11.13503 -10.93682 -10.87045 -10.29817 -10.18477 -9.79476 -9.78425 -8.68421 -8.35237 -6.13818 1.21279 1.41043 1.43063 1.43645 1.47291 1.53063 1.57847 1.81516 2.00340 2.13678 2.26967 2.98922 3.12966 3.17747 3.25791 3.36551 3.63179 3.67728 3.86607 3.94885 4.13117 4.19345 4.34520 4.34692 4.44055 4.46003 4.51822 4.59194 4.63887 4.64712 4.68046 4.74385 4.80342 4.85570 4.88882 4.91845 5.40680 5.43074 5.44439 5.98683 6.18747 6.38767 6.59250 7.02087 7.05977 7.09116 7.11183 8.73588 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013361 B = 0.002186 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.092849 B =12808.512724 C =13636.600059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.622 5.622 3 C 0.119 3.881 4 C -0.116 4.116 5 H 0.143 0.857 6 C 0.541 3.459 7 O -0.557 6.557 8 N -0.701 5.701 9 C 0.122 3.878 10 C 0.095 3.905 11 N -0.651 5.651 12 C 0.562 3.438 13 O -0.567 6.567 14 C -0.119 4.119 15 S -0.149 6.149 16 C -0.546 4.546 17 H 0.082 0.918 18 C 0.014 3.986 19 N -0.911 5.911 20 Si 0.998 3.002 21 H -0.262 1.262 22 H -0.280 1.280 23 H -0.261 1.261 24 C 0.085 3.915 25 C -0.139 4.139 26 C 0.508 3.492 27 O -0.581 6.581 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.412 0.588 34 H 0.145 0.855 35 H 0.079 0.921 36 H 0.121 0.879 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.271 0.729 40 H 0.123 0.877 41 H 0.085 0.915 42 H 0.125 0.875 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.720 5.963 15.907 28.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.355 5.355 3 C -0.004 4.004 4 C -0.138 4.138 5 H 0.161 0.839 6 C 0.328 3.672 7 O -0.435 6.435 8 N -0.351 5.351 9 C 0.015 3.985 10 C -0.027 4.027 11 N -0.388 5.388 12 C 0.351 3.649 13 O -0.445 6.445 14 C -0.270 4.270 15 S 0.078 5.922 16 C -0.694 4.694 17 H 0.100 0.900 18 C -0.191 4.191 19 N -0.547 5.547 20 Si 0.819 3.181 21 H -0.187 1.187 22 H -0.205 1.205 23 H -0.186 1.186 24 C -0.038 4.038 25 C -0.179 4.179 26 C 0.297 3.703 27 O -0.461 6.461 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.125 0.875 33 H 0.248 0.752 34 H 0.163 0.837 35 H 0.098 0.902 36 H 0.139 0.861 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.080 0.920 40 H 0.140 0.860 41 H 0.103 0.897 42 H 0.143 0.857 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -22.121 4.316 16.363 27.852 hybrid contribution -0.070 1.110 -1.391 1.781 sum -22.191 5.426 14.972 27.314 Atomic orbital electron populations 1.21747 0.76798 1.03392 1.03543 1.48389 1.07628 1.07290 1.72226 1.22079 0.87599 0.86442 1.04258 1.22244 0.93657 0.94230 1.03667 0.83896 1.20178 0.83159 0.82742 0.81151 1.90731 1.82366 1.32675 1.37748 1.45579 1.04891 1.38450 1.46216 1.22206 0.86357 0.93183 0.96737 1.23601 0.92523 1.01198 0.85396 1.49720 1.44575 1.26312 1.18232 1.19544 0.76833 0.85127 0.83366 1.90708 1.47294 1.26148 1.80376 1.23259 1.04504 1.02547 0.96680 1.85583 1.56295 1.33162 1.17171 1.23143 1.32035 1.09115 1.05093 0.89988 1.26128 0.93839 0.98175 1.00984 1.70176 1.26628 1.27306 1.30584 0.85015 0.78740 0.77816 0.76505 1.18687 1.20464 1.18571 1.23909 0.88831 0.90574 1.00512 1.22339 0.93761 0.95458 1.06376 1.21268 0.90382 0.84099 0.74526 1.90722 1.79483 1.22999 1.52923 0.91439 0.90273 0.89833 0.89497 0.87464 0.75179 0.83709 0.90241 0.86100 0.87952 0.87655 0.91975 0.85952 0.89667 0.85712 0.86590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.88 11.14 127.77 1.42 2.30 16 2 N -0.62 -8.36 3.33 -842.73 -2.81 -11.17 16 3 C 0.12 1.10 6.69 86.82 0.58 1.68 16 4 C -0.12 -0.98 3.54 -10.48 -0.04 -1.02 16 5 H 0.14 0.70 8.14 -2.39 -0.02 0.68 16 6 C 0.54 6.29 7.06 87.66 0.62 6.91 16 7 O -0.56 -9.68 15.12 -3.02 -0.05 -9.72 16 8 N -0.70 -7.46 5.39 -441.53 -2.38 -9.84 16 9 C 0.12 1.29 4.61 45.55 0.21 1.50 16 10 C 0.10 1.38 8.38 83.17 0.70 2.07 16 11 N -0.65 -14.52 3.69 -857.93 -3.16 -17.68 16 12 C 0.56 19.79 8.10 87.66 0.71 20.50 16 13 O -0.57 -25.57 16.64 -3.02 -0.05 -25.62 16 14 C -0.12 -4.57 5.98 71.23 0.43 -4.14 16 15 S -0.15 -8.13 20.57 -56.49 -1.16 -9.29 16 16 C -0.55 -30.58 9.50 67.96 0.65 -29.93 16 17 H 0.08 4.25 7.80 -2.91 -0.02 4.22 16 18 C 0.01 0.76 5.49 84.86 0.47 1.23 16 19 N -0.91 -55.24 13.22 21.65 0.29 -54.95 16 20 Si 1.00 42.72 29.55 68.60 2.03 44.75 16 21 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 22 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 23 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 24 C 0.08 1.13 8.26 83.26 0.69 1.82 16 25 C -0.14 -1.53 6.40 30.59 0.20 -1.33 16 26 C 0.51 9.42 8.03 87.90 0.71 10.13 16 27 O -0.58 -16.29 17.35 -3.04 -0.05 -16.35 16 28 H 0.07 0.93 7.53 -2.39 -0.02 0.91 16 29 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.09 0.98 7.01 -2.39 -0.02 0.96 16 32 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.41 4.22 8.76 -92.71 -0.81 3.41 16 34 H 0.15 1.23 7.45 -2.39 -0.02 1.21 16 35 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 38 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 39 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 40 H 0.12 1.11 8.14 -2.39 -0.02 1.10 16 41 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.12 1.17 7.89 -2.39 -0.02 1.15 16 Total: -1.00 -87.35 383.68 0.21 -87.14 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 0.23 Total: 11.00 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 7.33 Total: 11.73 kcal Atomic # 7 Polarization: -85.58 SS G_CDS: -8.07 Total: -93.65 kcal Atomic # 8 Polarization: -51.54 SS G_CDS: -0.15 Total: -51.69 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Atomic # 16 Polarization: -8.13 SS G_CDS: -1.16 Total: -9.29 kcal Total: -87.35 0.21 -87.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704525993.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.193 kcal (2) G-P(sol) polarization free energy of solvation -87.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds