Wall clock time and date at job start Sat Apr 11 2020 06:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21285 * 119.99930 * 2 1 4 4 N 1.34770 * 120.00025 * 180.02562 * 2 1 3 5 5 C 1.46500 * 119.99737 * 179.97438 * 4 2 1 6 6 C 1.50702 * 109.47017 * 179.97438 * 5 4 2 7 7 O 1.21278 * 120.00178 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00099 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99985 * 180.02562 * 8 6 5 10 10 H 1.09000 * 115.49231 * 350.38340 * 9 8 6 11 11 C 1.53004 * 117.44057 * 205.00447 * 9 8 6 12 12 H 1.08994 * 120.26208 * 3.82669 * 11 9 8 13 13 C 1.54389 * 118.12128 * 160.81047 * 11 9 8 14 14 N 1.48146 * 104.71947 * 87.13164 * 13 11 9 15 15 C 1.34781 * 127.83955 * 140.47832 * 14 13 11 16 16 O 1.21284 * 119.99414 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00268 * 179.97438 * 15 14 13 18 18 S 1.80998 * 109.47302 * 179.97438 * 17 15 14 19 19 C 1.76199 * 100.00174 * 179.97438 * 18 17 15 20 20 H 1.07997 * 119.99933 * 0.02562 * 19 18 17 21 21 C 1.38795 * 119.99909 * 179.97438 * 19 18 17 22 22 N 1.31628 * 119.99972 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99718 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47393 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47085 * 120.00339 * 23 21 19 26 26 H 1.48507 * 109.47149 * 240.00181 * 23 21 19 27 27 C 1.47362 * 104.72292 * 321.30060 * 14 13 11 28 28 C 1.53000 * 117.44139 * 135.76697 * 9 8 6 29 29 H 1.09004 * 119.54157 * 355.87232 * 28 9 8 30 30 H 1.09007 * 109.47315 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47555 * 299.99323 * 1 2 3 32 32 H 1.09000 * 109.47345 * 59.99658 * 1 2 3 33 33 H 0.96996 * 120.00208 * 359.97438 * 4 2 1 34 34 H 1.08997 * 109.47198 * 60.00078 * 5 4 2 35 35 H 1.08999 * 109.47625 * 299.99569 * 5 4 2 36 36 H 0.97000 * 120.00152 * 0.02562 * 8 6 5 37 37 H 1.09002 * 110.40709 * 205.97462 * 13 11 9 38 38 H 1.09002 * 110.40588 * 328.28824 * 13 11 9 39 39 H 1.09008 * 109.46541 * 299.99599 * 17 15 14 40 40 H 1.08999 * 109.47316 * 59.99484 * 17 15 14 41 41 H 0.97003 * 119.99754 * 179.97438 * 22 21 19 42 42 H 1.09008 * 108.98294 * 279.83604 * 27 14 13 43 43 H 1.09000 * 111.33640 * 157.75630 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1671 -0.0005 5 6 3.6458 -1.1671 -0.0011 6 6 4.1482 -2.5879 -0.0010 7 8 3.3602 -3.5097 -0.0009 8 7 5.4733 -2.8341 -0.0019 9 6 5.9616 -4.2154 -0.0024 10 1 5.2036 -4.9810 0.1625 11 6 7.3573 -4.4699 0.5705 12 1 7.9255 -3.6535 1.0161 13 6 7.7170 -5.9091 0.9983 14 7 8.2310 -6.5508 -0.2341 15 6 9.2680 -7.4038 -0.3514 16 8 9.9009 -7.7274 0.6312 17 6 9.6408 -7.9552 -1.7034 18 16 11.0628 -9.0620 -1.5323 19 6 11.2761 -9.5481 -3.2124 20 1 10.6155 -9.1615 -3.9744 21 6 12.2936 -10.4269 -3.5568 22 7 13.0990 -10.8977 -2.6281 23 14 12.5193 -10.9428 -5.3379 24 1 11.4919 -10.2786 -6.1796 25 1 13.8723 -10.5431 -5.8014 26 1 12.3734 -12.4165 -5.4487 27 6 7.3694 -6.0346 -1.3124 28 6 7.1133 -4.5557 -0.9505 29 1 7.4873 -3.7956 -1.6364 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.6959 -2.0072 -0.0005 34 1 4.0095 -0.6534 0.8888 35 1 4.0089 -0.6531 -0.8911 36 1 6.1036 -2.0969 -0.0024 37 1 8.4874 -5.8952 1.7693 38 1 6.8303 -6.4316 1.3574 39 1 8.7968 -8.5086 -2.1153 40 1 9.8983 -7.1341 -2.3723 41 1 13.8099 -11.5122 -2.8687 42 1 6.4331 -6.5927 -1.3160 43 1 7.8608 -6.1088 -2.2826 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001720866025.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:27 Heat of formation + Delta-G solvation = -66.414252 kcal Electronic energy + Delta-G solvation = -25563.384811 eV Core-core repulsion = 21543.203385 eV Total energy + Delta-G solvation = -4020.181426 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.05618 -40.32580 -39.45460 -38.11599 -35.24458 -34.92140 -32.78383 -32.45574 -30.97568 -29.83491 -28.37600 -27.74429 -25.63731 -25.13886 -22.01667 -21.36435 -21.15776 -20.60825 -19.46924 -18.29489 -17.80060 -17.53118 -16.75929 -16.64389 -16.53657 -16.20333 -15.49374 -15.37602 -15.18406 -14.82891 -14.50005 -13.99570 -13.94468 -13.72523 -13.66440 -13.43795 -13.24917 -13.10790 -12.83541 -12.63448 -12.55267 -12.43032 -11.94472 -11.89617 -11.35549 -11.09148 -11.04851 -10.79670 -10.68255 -10.54783 -10.47289 -9.84272 -9.78954 -9.48446 -9.35944 -9.10111 -8.70833 -8.26805 -6.53755 -6.24502 -3.95514 1.82123 2.05393 2.08899 2.75444 2.86162 2.99098 3.14651 3.19742 3.23887 3.29209 3.55441 3.88915 4.13455 4.16764 4.19845 4.31635 4.39470 4.64813 4.65696 4.71069 4.75880 4.79532 4.89503 4.99758 5.10937 5.19049 5.24410 5.28787 5.43455 5.54776 5.62105 5.63654 5.69291 5.72209 5.84169 5.88592 6.08160 6.21395 6.73729 6.91051 7.44771 7.57071 7.61033 7.63391 8.32650 8.46513 9.21008 10.83004 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.026716 B = 0.001581 C = 0.001523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.802210 B =17707.889122 C =18383.582735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.514 3.486 3 O -0.549 6.549 4 N -0.720 5.720 5 C 0.099 3.901 6 C 0.516 3.484 7 O -0.531 6.531 8 N -0.695 5.695 9 C 0.120 3.880 10 H 0.142 0.858 11 C -0.178 4.178 12 H 0.125 0.875 13 C 0.136 3.864 14 N -0.629 5.629 15 C 0.555 3.445 16 O -0.513 6.513 17 C -0.147 4.147 18 S -0.060 6.060 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.279 1.279 27 C 0.131 3.869 28 C -0.182 4.182 29 H 0.124 0.876 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.414 0.586 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.407 0.593 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.268 0.732 42 H 0.074 0.926 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.303 21.280 4.823 31.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.301 3.699 3 O -0.427 6.427 4 N -0.377 5.377 5 C -0.029 4.029 6 C 0.302 3.698 7 O -0.407 6.407 8 N -0.344 5.344 9 C 0.014 3.986 10 H 0.159 0.841 11 C -0.199 4.199 12 H 0.143 0.857 13 C 0.013 3.987 14 N -0.366 5.366 15 C 0.344 3.656 16 O -0.386 6.386 17 C -0.298 4.298 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.092 0.908 21 C -0.135 4.135 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.205 1.205 27 C 0.007 3.993 28 C -0.203 4.203 29 H 0.142 0.858 30 H 0.097 0.903 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.252 0.748 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.243 0.757 37 H 0.110 0.890 38 H 0.092 0.908 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.092 0.908 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -22.244 20.656 6.323 31.008 hybrid contribution -0.298 0.138 -2.365 2.388 sum -22.542 20.795 3.957 30.923 Atomic orbital electron populations 1.21837 0.90907 1.04630 1.05570 1.20877 0.90875 0.82917 0.75186 1.90747 1.70752 1.31399 1.49754 1.45882 1.05758 1.10167 1.75855 1.21043 0.82871 0.93722 1.05247 1.20516 0.82396 0.91248 0.75595 1.90730 1.54977 1.45902 1.49067 1.45165 1.06913 1.07811 1.74531 1.21683 0.91120 0.84798 1.01037 0.84064 1.24197 0.98830 0.99676 0.97166 0.85699 1.21626 0.99629 0.88788 0.88704 1.49094 1.32475 1.46695 1.08331 1.20030 0.77288 0.76994 0.91250 1.90720 1.50375 1.57898 1.39633 1.23517 1.06241 1.04240 0.95782 1.85418 1.31675 1.53490 1.12759 1.22896 1.19538 1.32819 0.93105 0.90844 1.24990 0.94778 0.95176 0.98596 1.70027 1.17148 1.30240 1.32816 0.86111 0.78200 0.78439 0.82712 1.19612 1.20556 1.20529 1.21609 0.94939 0.90425 0.92292 1.24258 1.03521 0.98874 0.93668 0.85766 0.90253 0.88447 0.88440 0.74797 0.88022 0.88004 0.75741 0.89000 0.90764 0.89145 0.89227 0.92201 0.90776 0.88932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.54 10.39 36.00 0.37 -0.16 16 2 C 0.51 3.51 7.94 -10.99 -0.09 3.43 16 3 O -0.55 -6.01 17.10 5.55 0.09 -5.91 16 4 N -0.72 -4.13 5.53 -61.48 -0.34 -4.47 16 5 C 0.10 0.50 6.15 -5.19 -0.03 0.47 16 6 C 0.52 3.33 7.90 -10.98 -0.09 3.25 16 7 O -0.53 -5.19 15.23 5.56 0.08 -5.11 16 8 N -0.69 -3.51 5.56 -53.80 -0.30 -3.81 16 9 C 0.12 0.83 6.00 -67.93 -0.41 0.42 16 10 H 0.14 1.17 7.40 -51.93 -0.38 0.78 16 11 C -0.18 -1.36 7.06 -89.22 -0.63 -1.99 16 12 H 0.13 0.80 8.14 -51.93 -0.42 0.38 16 13 C 0.14 1.47 6.86 -2.41 -0.02 1.45 16 14 N -0.63 -8.58 3.31 -169.94 -0.56 -9.15 16 15 C 0.56 10.45 7.93 -10.98 -0.09 10.36 16 16 O -0.51 -11.69 16.13 5.55 0.09 -11.60 16 17 C -0.15 -2.96 5.13 36.00 0.18 -2.77 16 18 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 19 C -0.54 -15.11 9.50 30.94 0.29 -14.82 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -25.97 13.22 55.49 0.73 -25.23 16 23 Si 0.92 21.22 29.55 -169.99 -5.02 16.20 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 C 0.13 1.31 6.66 -2.84 -0.02 1.29 16 28 C -0.18 -1.38 7.04 -89.22 -0.63 -2.01 16 29 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.08 0.11 7.92 -51.92 -0.41 -0.30 16 31 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.41 2.10 7.27 -40.82 -0.30 1.81 16 34 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.41 1.02 8.83 -40.82 -0.36 0.66 16 37 H 0.09 1.10 7.88 -51.93 -0.41 0.70 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 40 H 0.09 1.66 7.92 -51.92 -0.41 1.24 16 41 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 43 H 0.09 0.91 7.30 -51.93 -0.38 0.53 16 LS Contribution 385.48 15.07 5.81 5.81 Total: -1.00 -38.58 385.48 -8.86 -47.44 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -6.00 Total: -1.24 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -1.24 Total: 0.90 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: -0.47 Total: -42.66 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: 0.27 Total: -22.61 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -38.58 -8.86 -47.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720866025.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.973 kcal (2) G-P(sol) polarization free energy of solvation -38.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds