Wall clock time and date at job start Sat Apr 11 2020 06:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21285 * 119.99930 * 2 1 4 4 N 1.34770 * 120.00025 * 180.02562 * 2 1 3 5 5 C 1.46500 * 119.99737 * 179.97438 * 4 2 1 6 6 C 1.50702 * 109.47017 * 179.97438 * 5 4 2 7 7 O 1.21278 * 120.00178 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00099 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99985 * 180.02562 * 8 6 5 10 10 H 1.09000 * 115.49231 * 350.38340 * 9 8 6 11 11 C 1.53004 * 117.44057 * 205.00447 * 9 8 6 12 12 H 1.08994 * 120.26208 * 3.82669 * 11 9 8 13 13 C 1.54389 * 118.12128 * 160.81047 * 11 9 8 14 14 N 1.48146 * 104.71947 * 87.13164 * 13 11 9 15 15 C 1.34781 * 127.83955 * 140.47832 * 14 13 11 16 16 O 1.21284 * 119.99414 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00268 * 179.97438 * 15 14 13 18 18 S 1.80998 * 109.47302 * 179.97438 * 17 15 14 19 19 C 1.76199 * 100.00174 * 179.97438 * 18 17 15 20 20 H 1.07997 * 119.99933 * 0.02562 * 19 18 17 21 21 C 1.38795 * 119.99909 * 179.97438 * 19 18 17 22 22 N 1.31628 * 119.99972 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99718 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47393 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47085 * 120.00339 * 23 21 19 26 26 H 1.48507 * 109.47149 * 240.00181 * 23 21 19 27 27 C 1.47362 * 104.72292 * 321.30060 * 14 13 11 28 28 C 1.53000 * 117.44139 * 135.76697 * 9 8 6 29 29 H 1.09004 * 119.54157 * 355.87232 * 28 9 8 30 30 H 1.09007 * 109.47315 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47555 * 299.99323 * 1 2 3 32 32 H 1.09000 * 109.47345 * 59.99658 * 1 2 3 33 33 H 0.96996 * 120.00208 * 359.97438 * 4 2 1 34 34 H 1.08997 * 109.47198 * 60.00078 * 5 4 2 35 35 H 1.08999 * 109.47625 * 299.99569 * 5 4 2 36 36 H 0.97000 * 120.00152 * 0.02562 * 8 6 5 37 37 H 1.09002 * 110.40709 * 205.97462 * 13 11 9 38 38 H 1.09002 * 110.40588 * 328.28824 * 13 11 9 39 39 H 1.09008 * 109.46541 * 299.99599 * 17 15 14 40 40 H 1.08999 * 109.47316 * 59.99484 * 17 15 14 41 41 H 0.97003 * 119.99754 * 179.97438 * 22 21 19 42 42 H 1.09008 * 108.98294 * 279.83604 * 27 14 13 43 43 H 1.09000 * 111.33640 * 157.75630 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1671 -0.0005 5 6 3.6458 -1.1671 -0.0011 6 6 4.1482 -2.5879 -0.0010 7 8 3.3602 -3.5097 -0.0009 8 7 5.4733 -2.8341 -0.0019 9 6 5.9616 -4.2154 -0.0024 10 1 5.2036 -4.9810 0.1625 11 6 7.3573 -4.4699 0.5705 12 1 7.9255 -3.6535 1.0161 13 6 7.7170 -5.9091 0.9983 14 7 8.2310 -6.5508 -0.2341 15 6 9.2680 -7.4038 -0.3514 16 8 9.9009 -7.7274 0.6312 17 6 9.6408 -7.9552 -1.7034 18 16 11.0628 -9.0620 -1.5323 19 6 11.2761 -9.5481 -3.2124 20 1 10.6155 -9.1615 -3.9744 21 6 12.2936 -10.4269 -3.5568 22 7 13.0990 -10.8977 -2.6281 23 14 12.5193 -10.9428 -5.3379 24 1 11.4919 -10.2786 -6.1796 25 1 13.8723 -10.5431 -5.8014 26 1 12.3734 -12.4165 -5.4487 27 6 7.3694 -6.0346 -1.3124 28 6 7.1133 -4.5557 -0.9505 29 1 7.4873 -3.7956 -1.6364 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.6959 -2.0072 -0.0005 34 1 4.0095 -0.6534 0.8888 35 1 4.0089 -0.6531 -0.8911 36 1 6.1036 -2.0969 -0.0024 37 1 8.4874 -5.8952 1.7693 38 1 6.8303 -6.4316 1.3574 39 1 8.7968 -8.5086 -2.1153 40 1 9.8983 -7.1341 -2.3723 41 1 13.8099 -11.5122 -2.8687 42 1 6.4331 -6.5927 -1.3160 43 1 7.8608 -6.1088 -2.2826 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001720866025.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:27 Heat of formation + Delta-G solvation = -96.857076 kcal Electronic energy + Delta-G solvation = -25564.704911 eV Core-core repulsion = 21543.203385 eV Total energy + Delta-G solvation = -4021.501526 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.77730 -41.05525 -40.16723 -39.28149 -36.02814 -35.49204 -34.59576 -33.65955 -31.46277 -31.05267 -29.33587 -28.28584 -27.68358 -26.19245 -22.69038 -21.89110 -21.63971 -21.35485 -20.79507 -19.59899 -18.79025 -18.35519 -17.86808 -17.21721 -17.01679 -16.91992 -16.89491 -16.63176 -16.57474 -15.89883 -15.71021 -15.09801 -15.02247 -14.65322 -14.39916 -14.23062 -14.06145 -13.92064 -13.76810 -13.50300 -13.39186 -13.28972 -13.15166 -12.92292 -12.91821 -12.69906 -12.59218 -12.00951 -11.73213 -11.32907 -11.28077 -11.16647 -11.09563 -10.83746 -10.29317 -10.28488 -9.93515 -9.85525 -8.69013 -8.35672 -6.14351 1.20936 1.30463 1.41082 1.41818 1.46868 1.56139 1.59353 1.64282 2.04468 2.26066 2.40406 2.50584 2.98871 3.23910 3.36958 3.47990 3.60190 3.63956 3.86929 3.95687 4.04482 4.13283 4.24407 4.29328 4.35242 4.39989 4.44673 4.53022 4.62385 4.68128 4.68478 4.74540 4.95935 5.03316 5.07230 5.16792 5.27275 5.33823 5.41391 6.19203 6.31218 6.36436 6.46605 6.99317 7.05455 7.06048 7.16200 8.73883 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.026716 B = 0.001581 C = 0.001523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.802210 B =17707.889122 C =18383.582735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.510 3.490 3 O -0.596 6.596 4 N -0.717 5.717 5 C 0.099 3.901 6 C 0.522 3.478 7 O -0.565 6.565 8 N -0.681 5.681 9 C 0.133 3.867 10 H 0.131 0.869 11 C -0.170 4.170 12 H 0.143 0.857 13 C 0.128 3.872 14 N -0.621 5.621 15 C 0.554 3.446 16 O -0.565 6.565 17 C -0.121 4.121 18 S -0.151 6.151 19 C -0.546 4.546 20 H 0.084 0.916 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.256 1.256 25 H -0.274 1.274 26 H -0.274 1.274 27 C 0.121 3.879 28 C -0.174 4.174 29 H 0.143 0.857 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.418 0.582 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.423 0.577 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.271 0.729 42 H 0.087 0.913 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.271 22.925 3.138 34.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.299 3.701 3 O -0.477 6.477 4 N -0.373 5.373 5 C -0.028 4.028 6 C 0.309 3.691 7 O -0.443 6.443 8 N -0.332 5.332 9 C 0.026 3.974 10 H 0.149 0.851 11 C -0.191 4.191 12 H 0.161 0.839 13 C 0.006 3.994 14 N -0.356 5.356 15 C 0.343 3.657 16 O -0.444 6.444 17 C -0.272 4.272 18 S 0.077 5.923 19 C -0.693 4.693 20 H 0.102 0.898 21 C -0.190 4.190 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.180 1.180 25 H -0.199 1.199 26 H -0.200 1.200 27 C -0.002 4.002 28 C -0.195 4.195 29 H 0.161 0.839 30 H 0.118 0.882 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.257 0.743 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.261 0.739 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.080 0.920 42 H 0.106 0.894 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -24.258 22.344 4.630 33.303 hybrid contribution 0.185 -0.307 -1.772 1.808 sum -24.073 22.036 2.858 32.761 Atomic orbital electron populations 1.21883 0.88184 1.06245 1.06196 1.21501 0.92241 0.82288 0.74033 1.90723 1.71911 1.32906 1.52152 1.45942 1.06185 1.10148 1.74984 1.21117 0.82651 0.92786 1.06226 1.20692 0.82383 0.91317 0.74721 1.90724 1.55901 1.46942 1.50764 1.45024 1.06868 1.07586 1.73700 1.21455 0.90392 0.85517 1.00024 0.85096 1.24073 0.99775 0.98010 0.97201 0.83911 1.21819 0.99403 0.90924 0.87300 1.49016 1.30813 1.44870 1.10875 1.19724 0.78263 0.77814 0.89940 1.90697 1.52714 1.60210 1.40731 1.23314 1.03239 1.03217 0.97406 1.85599 1.36358 1.56317 1.14071 1.23227 1.19959 1.33059 0.93102 0.89838 1.26121 0.94202 0.94956 1.03758 1.70189 1.17961 1.31089 1.35524 0.84900 0.78564 0.78093 0.76352 1.17967 1.19910 1.19960 1.21902 0.94679 0.92219 0.91369 1.24222 1.03921 0.97605 0.93756 0.83881 0.88170 0.87749 0.87766 0.74315 0.87013 0.86997 0.73911 0.90587 0.89582 0.87475 0.87310 0.91967 0.89442 0.88419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.75 10.39 71.23 0.74 -0.01 16 2 C 0.51 6.34 7.94 87.66 0.70 7.04 16 3 O -0.60 -12.67 17.10 -3.05 -0.05 -12.72 16 4 N -0.72 -7.08 5.53 -466.80 -2.58 -9.66 16 5 C 0.10 0.80 6.15 85.63 0.53 1.33 16 6 C 0.52 5.54 7.90 87.66 0.69 6.23 16 7 O -0.56 -10.05 15.23 -3.02 -0.05 -10.10 16 8 N -0.68 -4.84 5.56 -442.52 -2.46 -7.30 16 9 C 0.13 1.45 6.00 44.99 0.27 1.72 16 10 H 0.13 1.85 7.40 -2.39 -0.02 1.83 16 11 C -0.17 -2.14 7.06 -9.88 -0.07 -2.21 16 12 H 0.14 1.37 8.14 -2.39 -0.02 1.35 16 13 C 0.13 2.61 6.86 86.53 0.59 3.20 16 14 N -0.62 -16.24 3.31 -809.95 -2.68 -18.92 16 15 C 0.55 20.93 7.93 87.66 0.69 21.62 16 16 O -0.57 -26.71 16.13 -3.04 -0.05 -26.76 16 17 C -0.12 -4.81 5.13 71.23 0.37 -4.45 16 18 S -0.15 -8.37 20.57 -56.49 -1.16 -9.54 16 19 C -0.55 -30.98 9.50 67.95 0.65 -30.34 16 20 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 21 C 0.01 0.82 5.49 84.86 0.47 1.28 16 22 N -0.91 -55.77 13.22 21.65 0.29 -55.48 16 23 Si 1.00 43.24 29.55 68.60 2.03 45.27 16 24 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 25 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 26 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 27 C 0.12 2.11 6.66 86.69 0.58 2.69 16 28 C -0.17 -2.08 7.04 -9.89 -0.07 -2.15 16 29 H 0.14 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.10 0.02 7.92 -2.38 -0.02 0.01 16 31 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.42 3.56 7.27 -92.71 -0.67 2.89 16 34 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.42 0.61 8.83 -92.71 -0.82 -0.21 16 37 H 0.08 1.83 7.88 -2.39 -0.02 1.81 16 38 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 40 H 0.11 3.89 7.92 -2.40 -0.02 3.87 16 41 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 42 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 43 H 0.10 1.65 7.30 -2.39 -0.02 1.63 16 Total: -1.00 -87.24 385.48 -1.02 -88.26 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -0.43 Total: 10.99 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: 6.13 Total: 5.96 kcal Atomic # 7 Polarization: -83.93 SS G_CDS: -7.43 Total: -91.36 kcal Atomic # 8 Polarization: -49.43 SS G_CDS: -0.15 Total: -49.58 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.54 kcal Total: -87.24 -1.02 -88.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720866025.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.599 kcal (2) G-P(sol) polarization free energy of solvation -87.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds