Wall clock time and date at job start Sat Apr 11 2020 06:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46507 * 109.46849 * 2 1 4 4 C 1.46497 * 120.00182 * 92.72799 * 3 2 1 5 5 C 1.52998 * 109.47068 * 89.99900 * 4 3 2 6 6 N 1.46507 * 109.47032 * 179.97438 * 5 4 3 7 7 C 1.34780 * 120.00025 * 179.97438 * 6 5 4 8 8 O 1.21282 * 119.99971 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.99790 * 179.97438 * 7 6 5 10 10 S 1.81002 * 109.46882 * 180.02562 * 9 7 6 11 11 C 1.76197 * 100.00049 * 180.02562 * 10 9 7 12 12 H 1.08000 * 119.99876 * 0.02562 * 11 10 9 13 13 C 1.38799 * 120.00323 * 180.02562 * 11 10 9 14 14 N 1.31632 * 119.99667 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00473 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.46990 * 89.99290 * 15 13 11 17 17 H 1.48500 * 109.47280 * 209.99919 * 15 13 11 18 18 H 1.48505 * 109.46800 * 329.99999 * 15 13 11 19 19 C 1.34780 * 119.99995 * 272.72762 * 3 2 1 20 20 O 1.21578 * 120.00251 * 185.25911 * 19 3 2 21 21 C 1.47519 * 119.99632 * 5.25986 * 19 3 2 22 22 O 1.34637 * 126.94455 * 6.08046 * 21 19 3 23 23 N 1.20894 * 111.46625 * 179.97438 * 22 21 19 24 24 C 1.30125 * 111.98018 * 0.02562 * 23 22 21 25 25 C 1.36828 * 126.93876 * 185.76730 * 21 19 3 26 26 C 1.50694 * 128.07980 * 0.02562 * 25 21 19 27 27 H 1.09004 * 109.46922 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47081 * 299.99883 * 1 2 3 29 29 H 1.08996 * 109.47264 * 60.00529 * 1 2 3 30 30 H 1.09003 * 109.47525 * 240.00198 * 2 1 3 31 31 H 1.08996 * 109.47264 * 119.99471 * 2 1 3 32 32 H 1.09000 * 109.47239 * 209.99948 * 4 3 2 33 33 H 1.09002 * 109.46774 * 329.99844 * 4 3 2 34 34 H 1.08994 * 109.47363 * 299.99718 * 5 4 3 35 35 H 1.09002 * 109.47368 * 60.00309 * 5 4 3 36 36 H 0.96998 * 119.99985 * 0.02562 * 6 5 4 37 37 H 1.09000 * 109.47468 * 300.00086 * 9 7 6 38 38 H 1.08994 * 109.46955 * 60.00478 * 9 7 6 39 39 H 0.97003 * 120.00265 * 180.02562 * 14 13 11 40 40 H 1.08004 * 126.70406 * 179.97438 * 24 23 22 41 41 H 1.08995 * 109.47431 * 90.00003 * 26 25 21 42 42 H 1.08997 * 109.47314 * 210.00242 * 26 25 21 43 43 H 1.09006 * 109.46876 * 330.00133 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3193 2.0518 1.2672 5 6 3.7826 1.8050 1.6397 6 7 4.0838 2.4761 2.9068 7 6 5.3215 2.3956 3.4344 8 8 6.1859 1.7680 2.8600 9 6 5.6314 3.0864 4.7373 10 16 7.3625 2.7942 5.1781 11 6 7.4468 3.6868 6.6949 12 1 6.5721 4.1969 7.0707 13 6 8.6373 3.7345 7.4069 14 7 9.7033 3.1125 6.9492 15 14 8.7266 4.6802 9.0154 16 1 8.3781 3.7765 10.1409 17 1 10.1037 5.2017 9.2073 18 1 7.7687 5.8144 8.9765 19 6 2.1905 2.0352 -1.1659 20 8 2.6852 3.1457 -1.1728 21 6 1.7787 1.4033 -2.4337 22 8 1.1188 0.2389 -2.5806 23 7 0.9233 -0.0147 -3.7464 24 6 1.4036 0.9046 -4.5321 25 6 1.9850 1.8851 -3.6976 26 6 2.6743 3.1618 -4.1046 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 2.1470 3.1229 1.1615 33 1 1.6731 1.6554 2.0505 34 1 3.9549 0.7340 1.7456 35 1 4.4288 2.2014 0.8565 36 1 3.3924 2.9777 3.3663 37 1 5.4598 4.1575 4.6306 38 1 4.9850 2.6911 5.5208 39 1 10.5352 3.1455 7.4469 40 1 1.3622 0.9176 -5.6112 41 1 3.7380 2.9712 -4.2463 42 1 2.2431 3.5262 -5.0370 43 1 2.5402 3.9116 -3.3248 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721134039.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:34 Heat of formation + Delta-G solvation = -6.054602 kcal Electronic energy + Delta-G solvation = -26508.014324 eV Core-core repulsion = 22490.450289 eV Total energy + Delta-G solvation = -4017.564035 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -45.49407 -40.46568 -39.09159 -36.98461 -35.13259 -34.75243 -32.83615 -32.42286 -31.48695 -30.08584 -28.99587 -27.81035 -25.49724 -24.73329 -23.89310 -23.39899 -22.06878 -20.61518 -20.19348 -18.47836 -18.06186 -17.83565 -16.99654 -16.59320 -16.30298 -15.91203 -15.44057 -15.12407 -15.00140 -14.79797 -14.29096 -14.23057 -13.95983 -13.83712 -13.68231 -13.54407 -13.25658 -13.13074 -13.05932 -12.57600 -12.41318 -12.31282 -12.11396 -11.73889 -11.61127 -11.42731 -11.05904 -11.01974 -10.81528 -10.76529 -10.61898 -9.93815 -9.81930 -9.49421 -9.24155 -9.06758 -8.92693 -8.23073 -6.49541 -6.21105 -3.91700 0.33189 1.60644 2.00755 2.45770 2.60635 3.08639 3.09757 3.22808 3.28952 3.34110 3.69865 3.74866 3.90120 4.20860 4.21131 4.44842 4.56175 4.57020 4.64241 4.81242 4.82089 4.97579 5.10710 5.14026 5.17296 5.21632 5.26034 5.29227 5.37306 5.43851 5.60202 5.62764 5.74454 5.77421 5.81003 5.89619 6.00793 6.14102 6.55670 6.68065 7.38380 7.60027 7.63309 7.66863 8.35733 8.59743 9.24144 10.86305 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.026811 B = 0.001812 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.113302 B =15447.209410 C =15881.341878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.097 3.903 3 N -0.597 5.597 4 C 0.108 3.892 5 C 0.106 3.894 6 N -0.737 5.737 7 C 0.533 3.467 8 O -0.516 6.516 9 C -0.153 4.153 10 S -0.061 6.061 11 C -0.535 4.535 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 C 0.606 3.394 20 O -0.501 6.501 21 C -0.095 4.095 22 O 0.120 5.880 23 N -0.345 5.345 24 C -0.014 4.014 25 C -0.115 4.115 26 C -0.090 4.090 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.399 0.601 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.268 0.732 40 H 0.199 0.801 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.068 -4.171 -20.145 30.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.025 4.025 3 N -0.329 5.329 4 C -0.015 4.015 5 C -0.019 4.019 6 N -0.392 5.392 7 C 0.319 3.681 8 O -0.390 6.390 9 C -0.303 4.303 10 S 0.166 5.834 11 C -0.683 4.683 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.197 1.197 19 C 0.391 3.609 20 O -0.376 6.376 21 C -0.160 4.160 22 O 0.047 5.953 23 N -0.045 5.045 24 C -0.192 4.192 25 C -0.120 4.120 26 C -0.147 4.147 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.232 0.768 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.216 0.784 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -21.807 -5.820 -21.305 31.038 hybrid contribution -0.962 2.030 1.671 2.800 sum -22.770 -3.790 -19.634 30.304 Atomic orbital electron populations 1.22190 0.94949 1.03003 1.02451 1.21868 0.95250 0.81078 1.04350 1.47731 1.64879 1.14930 1.05409 1.21690 0.95822 0.99560 0.84431 1.21565 0.95240 0.98226 0.86882 1.45825 1.13121 1.56110 1.24192 1.20311 0.81238 0.80227 0.86303 1.90711 1.45767 1.40817 1.61655 1.23524 1.07652 1.02948 0.96210 1.85418 1.00594 1.69368 1.28021 1.22866 0.99822 1.37679 1.07981 0.90897 1.25000 0.94682 0.95601 0.98357 1.70020 1.01153 1.40620 1.38486 0.86161 0.77613 0.79663 0.82019 1.20287 1.20760 1.19689 1.16606 0.78609 0.84663 0.81008 1.90883 1.42952 1.18520 1.85240 1.23886 1.04875 0.90306 0.96938 1.85143 1.55775 1.32878 1.21481 1.73747 1.17993 1.22851 0.89900 1.25018 1.00400 0.91258 1.02527 1.21701 1.00364 0.99441 0.90474 1.20386 0.99787 0.91708 1.02841 0.90820 0.92099 0.92322 0.89522 0.88954 0.88731 0.89067 0.91394 0.91014 0.76753 0.89109 0.89147 0.92187 0.78438 0.89901 0.90576 0.88934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.87 9.71 37.16 0.36 -0.51 16 2 C 0.10 0.59 5.67 -4.04 -0.02 0.57 16 3 N -0.60 -4.88 2.48 -174.92 -0.43 -5.32 16 4 C 0.11 0.85 5.47 -4.04 -0.02 0.83 16 5 C 0.11 1.22 6.00 -4.04 -0.02 1.20 16 6 N -0.74 -9.46 5.56 -60.29 -0.33 -9.79 16 7 C 0.53 9.89 7.85 -10.99 -0.09 9.80 16 8 O -0.52 -11.82 15.86 5.56 0.09 -11.73 16 9 C -0.15 -3.04 6.16 36.00 0.22 -2.82 16 10 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 11 C -0.54 -15.22 9.50 30.94 0.29 -14.93 16 12 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 13 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 14 N -0.87 -26.20 13.22 55.49 0.73 -25.46 16 15 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 C 0.61 6.17 7.65 -12.48 -0.10 6.07 16 20 O -0.50 -6.39 14.72 5.30 0.08 -6.32 16 21 C -0.09 -0.87 6.67 -36.31 -0.24 -1.11 16 22 O 0.12 1.03 6.53 15.56 0.10 1.13 16 23 N -0.35 -3.09 12.04 30.46 0.37 -2.72 16 24 C -0.01 -0.10 12.14 -17.13 -0.21 -0.31 16 25 C -0.12 -0.94 6.36 -103.99 -0.66 -1.60 16 26 C -0.09 -0.61 10.01 36.00 0.36 -0.25 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.37 6.64 -51.93 -0.35 0.03 16 30 H 0.09 0.56 5.80 -51.93 -0.30 0.26 16 31 H 0.09 0.46 8.05 -51.93 -0.42 0.04 16 32 H 0.09 0.79 7.50 -51.93 -0.39 0.40 16 33 H 0.09 0.49 8.07 -51.93 -0.42 0.07 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.40 3.73 8.47 -40.82 -0.35 3.39 16 37 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 38 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 39 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.20 0.74 8.06 -52.48 -0.42 0.32 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.09 0.78 6.64 -51.93 -0.34 0.43 16 LS Contribution 381.02 15.07 5.74 5.74 Total: -1.00 -36.83 381.02 -7.03 -43.86 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -5.91 Total: -0.80 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -0.22 Total: -1.08 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: 0.33 Total: -43.29 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: 0.27 Total: -16.92 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.83 -7.03 -43.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721134039.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.802 kcal (2) G-P(sol) polarization free energy of solvation -36.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds