Wall clock time and date at job start Sat Apr 11 2020 06:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.46942 * 2 1 4 4 C 1.47204 * 109.47078 * 119.99654 * 2 1 3 5 5 N 2.60805 * 109.47093 * 119.99605 * 2 1 3 6 6 C 1.50696 * 109.47078 * 239.99246 * 2 1 3 7 7 O 1.21278 * 120.00628 * 266.74887 * 6 2 1 8 8 N 1.34783 * 119.99550 * 86.75015 * 6 2 1 9 9 C 1.47022 * 125.64941 * 354.89491 * 8 6 2 10 10 C 1.54322 * 107.27233 * 178.91809 * 9 8 6 11 11 C 1.55160 * 102.94387 * 337.80906 * 10 9 8 12 12 O 1.42897 * 111.00210 * 277.39227 * 11 10 9 13 13 C 1.52994 * 111.00776 * 153.57325 * 11 10 9 14 14 N 1.46499 * 109.47132 * 61.45421 * 13 11 10 15 15 C 1.34779 * 120.00072 * 180.02562 * 14 13 11 16 16 O 1.21274 * 119.99920 * 359.97438 * 15 14 13 17 17 C 1.50706 * 119.99581 * 180.02562 * 15 14 13 18 18 S 1.81007 * 109.46441 * 180.02562 * 17 15 14 19 19 C 1.76206 * 99.99568 * 179.97438 * 18 17 15 20 20 H 1.08000 * 119.99974 * 359.97438 * 19 18 17 21 21 C 1.38794 * 119.99956 * 179.97438 * 19 18 17 22 22 N 1.31626 * 120.00520 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99845 * 359.72252 * 21 19 18 24 24 H 1.48496 * 109.47255 * 90.00123 * 23 21 19 25 25 H 1.48509 * 109.47157 * 210.00195 * 23 21 19 26 26 H 1.48500 * 109.47193 * 329.99930 * 23 21 19 27 27 C 1.47426 * 125.64850 * 174.87116 * 8 6 2 28 28 H 1.09000 * 109.47379 * 305.72510 * 1 2 3 29 29 H 1.08996 * 109.47247 * 65.72854 * 1 2 3 30 30 H 1.09003 * 109.46999 * 185.72812 * 1 2 3 31 31 H 1.08998 * 109.88157 * 59.50128 * 9 8 6 32 32 H 1.08996 * 110.01046 * 298.40836 * 9 8 6 33 33 H 1.08996 * 110.72310 * 219.44344 * 10 9 8 34 34 H 1.09002 * 110.87215 * 96.23983 * 10 9 8 35 35 H 0.96703 * 113.99835 * 295.41570 * 12 11 10 36 36 H 1.09000 * 109.47258 * 301.45154 * 13 11 10 37 37 H 1.08998 * 109.47539 * 181.45212 * 13 11 10 38 38 H 0.97002 * 119.99951 * 359.97438 * 14 13 11 39 39 H 1.08998 * 109.47128 * 60.00092 * 17 15 14 40 40 H 1.09004 * 109.46948 * 299.99272 * 17 15 14 41 41 H 0.96996 * 120.01023 * 179.97438 * 22 21 19 42 42 H 1.08994 * 110.36818 * 85.30619 * 27 8 6 43 43 H 1.09004 * 110.36542 * 322.99046 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0207 -0.6939 1.2020 5 7 2.3993 -1.2293 2.1296 6 6 2.0323 -0.7106 -1.2303 7 8 2.2906 -1.8946 -1.1839 8 7 2.1945 -0.0301 -2.3824 9 6 1.8223 1.3742 -2.6078 10 6 2.2173 1.7260 -4.0576 11 6 3.3048 0.6696 -4.3875 12 8 4.5804 1.0738 -3.8859 13 6 3.3704 0.4014 -5.8923 14 7 3.7286 1.6369 -6.5933 15 6 3.8451 1.6404 -7.9361 16 8 3.6538 0.6206 -8.5639 17 6 4.2141 2.9113 -8.6570 18 16 4.2901 2.5944 -10.4375 19 6 4.7271 4.2005 -11.0157 20 1 4.8617 5.0094 -10.3128 21 6 4.8984 4.4262 -12.3744 22 7 5.2244 5.6260 -12.8064 23 14 4.6733 3.0253 -13.5895 24 1 3.2559 2.9747 -14.0294 25 1 5.5498 3.2463 -14.7678 26 1 5.0353 1.7413 -12.9372 27 6 2.7751 -0.5706 -3.6251 28 1 -0.3634 0.6000 0.8343 29 1 -0.3633 0.4224 -0.9368 30 1 -0.3633 -1.0226 0.1026 31 1 2.3602 2.0168 -1.9108 32 1 0.7479 1.5012 -2.4752 33 1 2.6296 2.7335 -4.1114 34 1 1.3642 1.6235 -4.7283 35 1 4.9296 1.8752 -4.2993 36 1 2.3983 0.0539 -6.2422 37 1 4.1227 -0.3613 -6.0931 38 1 3.8813 2.4527 -6.0911 39 1 5.1865 3.2581 -8.3075 40 1 3.4623 3.6745 -8.4560 41 1 5.3445 5.7837 -13.7559 42 1 2.0097 -1.0783 -4.2119 43 1 3.5934 -1.2532 -3.3959 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001722271463.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:49 Heat of formation + Delta-G solvation = -87.741247 kcal Electronic energy + Delta-G solvation = -26416.064298 eV Core-core repulsion = 22394.958065 eV Total energy + Delta-G solvation = -4021.106234 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.16351 -39.81497 -38.76367 -37.02512 -36.09473 -34.42604 -33.91717 -32.50343 -31.56031 -30.37890 -29.30471 -26.55107 -25.71421 -25.33895 -23.81883 -21.33896 -20.89942 -20.41118 -18.45018 -18.21982 -18.00493 -17.28558 -16.63340 -16.40882 -15.85515 -15.71644 -15.65592 -15.27876 -15.01389 -14.82966 -14.40530 -13.98285 -13.90829 -13.75993 -13.59204 -13.49557 -13.32282 -13.16693 -13.02251 -12.85439 -12.80525 -12.59168 -12.41432 -12.14055 -12.06935 -11.87166 -11.51695 -11.32529 -11.06322 -10.71180 -10.59699 -10.41662 -9.92656 -9.71111 -9.30657 -9.23373 -9.05986 -8.58626 -6.99918 -6.35123 -4.07920 1.76919 1.96498 2.29128 2.52849 2.64626 2.79967 3.13846 3.25954 3.28201 3.37313 3.45410 3.53074 3.71902 3.81961 4.01006 4.16000 4.20547 4.27206 4.29029 4.51683 4.58817 4.66763 4.80938 4.92697 4.96977 5.04004 5.06974 5.11921 5.14238 5.22556 5.31830 5.36250 5.36578 5.53961 5.57723 5.64023 5.88303 6.22548 6.75938 7.03420 7.04225 7.33131 7.45073 7.87585 8.29223 8.34677 9.10909 10.73953 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.037796 B = 0.001771 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.633511 B =15810.934174 C =16016.757978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.006 4.006 3 H 0.135 0.865 4 C 0.218 3.782 5 N -0.408 5.408 6 C 0.542 3.458 7 O -0.522 6.522 8 N -0.610 5.610 9 C 0.099 3.901 10 C -0.160 4.160 11 C 0.109 3.891 12 O -0.541 6.541 13 C 0.105 3.895 14 N -0.738 5.738 15 C 0.533 3.467 16 O -0.513 6.513 17 C -0.125 4.125 18 S -0.140 6.140 19 C -0.523 4.523 20 H 0.088 0.912 21 C 0.097 3.903 22 N -0.879 5.879 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.125 3.875 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.381 0.619 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.396 0.604 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.271 0.729 42 H 0.093 0.907 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.330 -4.618 24.360 26.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.031 4.031 3 H 0.153 0.847 4 C -0.101 4.101 5 N -0.083 5.083 6 C 0.327 3.673 7 O -0.397 6.397 8 N -0.344 5.344 9 C -0.024 4.024 10 C -0.198 4.198 11 C 0.066 3.934 12 O -0.347 6.347 13 C -0.020 4.020 14 N -0.394 5.394 15 C 0.319 3.681 16 O -0.387 6.387 17 C -0.275 4.275 18 S 0.086 5.914 19 C -0.671 4.671 20 H 0.106 0.894 21 C -0.112 4.112 22 N -0.515 5.515 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C 0.002 3.998 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.230 0.770 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.230 0.770 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.081 0.919 42 H 0.111 0.889 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.979 -8.244 25.033 28.182 hybrid contribution 0.241 2.147 -0.515 2.221 sum -9.738 -6.097 24.518 27.077 Atomic orbital electron populations 1.21772 0.89061 1.04676 1.04496 1.18772 0.99170 0.99825 0.85308 0.84734 1.28075 0.94032 0.93967 0.94052 1.81226 1.07589 1.07678 1.11791 1.19585 0.78208 0.86758 0.82725 1.90811 1.50048 1.14881 1.83999 1.48240 1.61856 1.13034 1.11275 1.22144 1.00728 0.81905 0.97583 1.23391 1.00178 1.00257 0.95982 1.22499 0.84232 0.94738 0.91904 1.86603 1.33460 1.48762 1.65876 1.21767 1.02803 0.88349 0.89118 1.45856 1.74126 1.12190 1.07216 1.20301 0.76048 0.90496 0.81262 1.90725 1.47844 1.34154 1.65959 1.23279 1.05128 0.97476 1.01641 1.84846 1.91987 1.18151 0.96446 1.22297 1.54797 0.93713 0.96277 0.89353 1.24707 0.93191 0.95776 0.97569 1.69927 1.45278 1.20686 1.15643 0.86746 0.79397 0.84077 0.81688 1.19192 1.19884 1.15932 1.22125 0.98700 0.94625 0.84334 0.89921 0.89863 0.90714 0.90454 0.90285 0.88840 0.88594 0.77025 0.90010 0.90045 0.77005 0.88354 0.88415 0.91877 0.88900 0.88731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.30 9.14 37.16 0.34 0.04 16 2 C -0.01 -0.03 2.59 -94.56 -0.24 -0.27 16 3 H 0.14 0.15 7.21 -51.93 -0.37 -0.23 16 4 C 0.22 1.88 14.04 -20.76 -0.29 1.58 16 5 N -0.41 -4.79 18.54 42.15 0.78 -4.01 16 6 C 0.54 4.19 6.92 -10.98 -0.08 4.11 16 7 O -0.52 -6.54 16.58 5.56 0.09 -6.45 16 8 N -0.61 -3.53 3.33 -170.52 -0.57 -4.10 16 9 C 0.10 0.24 6.30 -3.07 -0.02 0.22 16 10 C -0.16 -0.47 5.62 -24.90 -0.14 -0.61 16 11 C 0.11 0.60 0.95 -88.47 -0.08 0.51 16 12 O -0.54 -3.51 13.19 -35.23 -0.46 -3.97 16 13 C 0.10 0.83 4.90 -4.05 -0.02 0.81 16 14 N -0.74 -6.69 5.17 -60.30 -0.31 -7.00 16 15 C 0.53 8.03 7.85 -10.98 -0.09 7.95 16 16 O -0.51 -9.98 15.86 5.56 0.09 -9.89 16 17 C -0.12 -2.12 6.16 36.01 0.22 -1.90 16 18 S -0.14 -3.36 18.55 -107.50 -1.99 -5.35 16 19 C -0.52 -14.42 10.04 30.94 0.31 -14.11 16 20 H 0.09 2.53 8.03 -52.49 -0.42 2.11 16 21 C 0.10 2.73 5.50 -17.43 -0.10 2.63 16 22 N -0.88 -25.72 13.97 55.49 0.78 -24.95 16 23 Si 0.86 21.09 27.73 -169.99 -4.71 16.37 16 24 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 25 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.24 -5.79 6.74 56.52 0.38 -5.41 16 27 C 0.12 0.84 6.09 -2.53 -0.02 0.82 16 28 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 29 H 0.08 0.04 7.32 -51.93 -0.38 -0.34 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.10 7.67 -51.93 -0.40 -0.30 16 32 H 0.08 0.04 7.32 -51.93 -0.38 -0.34 16 33 H 0.09 0.15 8.05 -51.93 -0.42 -0.27 16 34 H 0.10 0.28 8.04 -51.93 -0.42 -0.14 16 35 H 0.38 1.39 8.16 45.56 0.37 1.76 16 36 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.40 2.24 7.36 -40.82 -0.30 1.94 16 39 H 0.10 1.54 8.14 -51.92 -0.42 1.12 16 40 H 0.10 1.51 8.14 -51.91 -0.42 1.09 16 41 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.09 0.53 8.00 -51.93 -0.42 0.12 16 43 H 0.09 0.83 8.09 -51.93 -0.42 0.41 16 LS Contribution 382.34 15.07 5.76 5.76 Total: -1.00 -39.36 382.34 -6.00 -45.35 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -5.24 Total: -3.54 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -0.20 Total: 1.79 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 0.68 Total: -40.06 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.28 Total: -20.32 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.71 Total: 16.37 kcal Atomic # 16 Polarization: -3.36 SS G_CDS: -1.99 Total: -5.35 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -39.36 -6.00 -45.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722271463.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.387 kcal (2) G-P(sol) polarization free energy of solvation -39.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds